Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86795 * 120.00337 * 2 1 4 4 H 1.48499 * 109.47242 * 274.67874 * 3 2 1 5 5 H 1.48502 * 109.47244 * 34.67611 * 3 2 1 6 6 H 1.48499 * 109.47299 * 154.67785 * 3 2 1 7 7 C 1.39903 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00250 * 197.48536 * 7 2 1 9 9 C 1.41136 * 119.99986 * 17.47908 * 7 2 1 10 10 C 1.40880 * 120.15703 * 25.17748 * 9 7 2 11 11 C 1.36349 * 119.82928 * 180.25042 * 10 9 7 12 12 C 1.39527 * 120.16569 * 359.48394 * 11 10 9 13 13 N 1.39082 * 119.83697 * 180.27563 * 12 11 10 14 14 C 1.34770 * 119.99715 * 33.30394 * 13 12 11 15 15 O 1.21724 * 120.00663 * 5.20078 * 14 13 12 16 16 C 1.46457 * 119.99876 * 185.19965 * 14 13 12 17 17 C 1.36680 * 125.18580 * 179.97438 * 16 14 13 18 18 C 1.36827 * 114.71006 * 179.97438 * 17 16 14 19 19 C 1.36413 * 114.79058 * 0.02562 * 18 17 16 20 20 C 1.47883 * 125.14104 * 180.02562 * 19 18 17 21 21 N 1.34204 * 126.70777 * 359.68543 * 20 19 18 22 22 N 1.28983 * 107.25316 * 179.83835 * 21 20 19 23 23 N 1.28721 * 108.99322 * 0.43543 * 22 21 20 24 24 H 0.97001 * 125.31575 * 179.72821 * 23 22 21 25 25 N 1.28870 * 109.36807 * 359.72149 * 23 22 21 26 26 S 1.75834 * 109.70829 * 359.73297 * 19 18 17 27 27 C 1.39529 * 120.32472 * 0.25390 * 12 11 10 28 28 C 1.36350 * 120.16586 * 359.97438 * 27 12 11 29 29 H 0.97007 * 119.99824 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.08738 * 0.03132 * 10 9 7 31 31 H 1.08004 * 119.91943 * 179.76282 * 11 10 9 32 32 H 0.96996 * 119.99469 * 213.30091 * 13 12 11 33 33 H 1.07999 * 122.64513 * 0.02562 * 17 16 14 34 34 H 1.08005 * 122.60430 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.91715 * 180.02562 * 27 12 11 36 36 H 1.07999 * 120.08567 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3914 2.1034 -1.3954 5 1 1.4932 2.6221 0.7966 6 1 3.5862 1.4135 0.5988 7 6 2.0082 -1.2116 0.0005 8 1 3.0507 -1.2331 0.2816 9 6 1.3514 -2.4058 -0.3660 10 6 0.2241 -2.3632 -1.2100 11 6 -0.4084 -3.5206 -1.5558 12 6 0.0646 -4.7458 -1.0847 13 7 -0.5824 -5.9226 -1.4464 14 6 -1.1576 -6.0296 -2.6605 15 8 -1.0303 -5.1344 -3.4754 16 6 -1.9358 -7.2231 -2.9995 17 6 -2.5625 -7.4415 -4.1943 18 6 -3.2307 -8.6325 -4.2804 19 6 -3.1636 -9.4082 -3.1604 20 6 -3.7992 -10.7343 -3.0041 21 7 -4.5390 -11.3819 -3.9175 22 7 -4.9012 -12.5026 -3.3917 23 7 -4.4300 -12.5761 -2.1961 24 1 -4.5626 -13.3182 -1.5857 25 7 -3.7545 -11.5097 -1.9367 26 16 -2.2002 -8.5965 -1.9337 27 6 1.1837 -4.7962 -0.2529 28 6 1.8237 -3.6467 0.1050 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1402 -1.4160 -1.5793 31 1 -1.2750 -3.4893 -2.1996 32 1 -0.6196 -6.6663 -0.8247 33 1 -2.5320 -6.7305 -5.0067 34 1 -3.7700 -8.9345 -5.1661 35 1 1.5444 -5.7482 0.1076 36 1 2.6901 -3.6873 0.7486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822815406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = 128.452383 kcal Electronic energy + Delta-G solvation = -24363.509430 eV Core-core repulsion = 20555.546632 eV Total energy + Delta-G solvation = -3807.962798 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.54502 -41.31751 -39.32276 -38.44144 -36.25717 -35.43366 -34.82571 -34.52356 -31.63952 -31.28928 -30.36857 -27.58817 -26.26042 -25.69675 -24.00285 -23.44789 -23.08322 -21.71518 -20.99284 -19.87515 -19.24602 -19.22988 -18.24461 -18.06068 -17.23841 -16.97589 -16.63286 -16.25283 -15.76104 -15.48280 -15.05779 -14.95807 -14.57425 -14.24329 -14.17923 -13.91249 -13.71652 -13.63879 -13.31004 -13.14653 -12.92333 -12.79990 -12.49807 -12.41020 -12.34938 -12.10081 -12.05109 -11.73675 -11.53332 -11.27410 -10.96812 -10.73187 -9.77372 -9.69347 -9.47021 -8.88763 -8.61343 -6.27635 -1.08211 0.01856 0.09520 0.58190 0.66026 0.92357 1.14386 1.32590 1.39428 1.46914 1.53560 1.61035 2.13579 2.15335 2.21525 2.52044 2.74914 3.18393 3.67453 3.76787 4.02491 4.08929 4.24554 4.41495 4.44016 4.45643 4.88254 4.92840 4.96333 5.09884 5.14798 5.20004 5.27638 5.39247 5.53677 5.66350 5.82673 6.03804 6.09437 6.31562 6.56163 6.66860 6.91808 6.97331 6.99817 7.21064 8.32378 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.037290 B = 0.001951 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.693793 B =14348.065969 C =14744.026940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.031 3.969 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.490 4.490 8 H 0.082 0.918 9 C 0.075 3.925 10 C -0.180 4.180 11 C -0.096 4.096 12 C 0.001 3.999 13 N -0.636 5.636 14 C 0.571 3.429 15 O -0.557 6.557 16 C -0.256 4.256 17 C -0.059 4.059 18 C -0.079 4.079 19 C -0.127 4.127 20 C 0.235 3.765 21 N -0.278 5.278 22 N -0.049 5.049 23 N -0.194 5.194 24 H 0.497 0.503 25 N -0.293 5.293 26 S 0.266 5.734 27 C -0.096 4.096 28 C -0.222 4.222 29 H 0.288 0.712 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.411 0.589 33 H 0.162 0.838 34 H 0.179 0.821 35 H 0.135 0.865 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.459 -23.206 -2.062 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.519 4.519 8 H 0.100 0.900 9 C 0.072 3.928 10 C -0.200 4.200 11 C -0.116 4.116 12 C -0.092 4.092 13 N -0.279 5.279 14 C 0.359 3.641 15 O -0.437 6.437 16 C -0.379 4.379 17 C -0.092 4.092 18 C -0.114 4.114 19 C -0.249 4.249 20 C -0.045 4.045 21 N -0.152 5.152 22 N -0.044 5.044 23 N -0.045 5.045 24 H 0.357 0.643 25 N -0.147 5.147 26 S 0.534 5.466 27 C -0.115 4.115 28 C -0.242 4.242 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.248 0.752 33 H 0.180 0.820 34 H 0.197 0.803 35 H 0.153 0.847 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.502 -23.360 -1.251 24.891 hybrid contribution -0.147 0.927 -0.664 1.150 sum -8.649 -22.433 -1.915 24.119 Atomic orbital electron populations 1.69908 1.09138 1.30613 1.35250 1.26831 0.95498 1.04780 0.91283 0.85160 0.79296 0.75848 0.79229 1.19103 1.19240 1.17733 1.19841 0.98393 0.92279 1.41418 0.89991 1.18034 0.91874 0.93661 0.89226 1.20868 1.00544 0.96534 1.02041 1.20464 0.99187 0.92097 0.99886 1.17166 0.98694 0.84701 1.08684 1.42693 1.54124 1.15720 1.15397 1.17367 0.79452 0.85673 0.81606 1.90835 1.61699 1.41642 1.49529 1.24573 1.10720 1.00607 1.01957 1.20664 0.94488 0.97476 0.96594 1.20554 0.99937 0.92054 0.98861 1.21911 1.07855 0.94564 1.00574 1.22385 0.99178 0.95636 0.87335 1.76182 1.13321 1.00140 1.25512 1.78889 1.16457 1.14128 0.94903 1.47752 1.29727 1.15367 1.11659 0.64312 1.75030 1.17216 0.97495 1.24936 1.83951 1.43940 1.06011 1.12665 1.20393 0.93486 0.98489 0.99180 1.20809 1.04217 0.92380 1.06813 0.90128 0.88379 0.88730 0.75232 0.82014 0.80341 0.84727 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.97 10.97 21.82 0.24 -43.73 16 2 C 0.03 1.59 5.14 85.24 0.44 2.03 16 3 Si 0.98 38.53 29.59 68.60 2.03 40.56 16 4 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 7 C -0.49 -26.43 9.03 23.38 0.21 -26.22 16 8 H 0.08 4.20 7.90 -2.91 -0.02 4.17 16 9 C 0.07 4.08 5.57 -21.27 -0.12 3.96 16 10 C -0.18 -10.01 8.63 22.48 0.19 -9.82 16 11 C -0.10 -4.92 8.57 22.14 0.19 -4.73 16 12 C 0.00 0.03 6.29 38.61 0.24 0.28 16 13 N -0.64 -22.07 5.30 -306.87 -1.63 -23.70 16 14 C 0.57 20.29 7.50 86.38 0.65 20.94 16 15 O -0.56 -24.70 14.45 -4.43 -0.06 -24.76 16 16 C -0.26 -6.69 6.43 24.05 0.15 -6.53 16 17 C -0.06 -1.32 9.88 21.57 0.21 -1.11 16 18 C -0.08 -1.45 10.09 21.51 0.22 -1.23 16 19 C -0.13 -2.42 6.48 24.40 0.16 -2.26 16 20 C 0.24 4.40 8.16 137.10 1.12 5.52 16 21 N -0.28 -5.38 12.51 -52.43 -0.66 -6.04 16 22 N -0.05 -0.73 13.46 37.02 0.50 -0.23 16 23 N -0.19 -1.83 7.90 37.02 0.29 -1.54 16 24 H 0.50 -0.40 8.96 -347.51 -3.12 -3.52 16 25 N -0.29 -4.46 12.41 -52.38 -0.65 -5.11 16 26 S 0.27 5.10 22.33 -56.49 -1.26 3.84 16 27 C -0.10 -4.00 9.89 22.14 0.22 -3.78 16 28 C -0.22 -10.58 9.74 22.48 0.22 -10.36 16 29 H 0.29 13.92 8.30 -92.70 -0.77 13.15 16 30 H 0.10 5.77 6.19 -2.91 -0.02 5.76 16 31 H 0.09 4.90 6.38 -2.91 -0.02 4.89 16 32 H 0.41 10.93 7.90 -92.71 -0.73 10.19 16 33 H 0.16 3.57 8.03 -2.91 -0.02 3.55 16 34 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -71.97 339.50 0.26 -71.71 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -2.65 Total: 22.32 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 4.11 Total: -33.33 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.90 Total: -80.35 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.06 Total: -24.76 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.26 Total: 3.84 kcal Total: -71.97 0.26 -71.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822815406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.161 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds