Wall clock time and date at job start Sat Apr 11 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99742 * 2 1 4 4 H 1.48498 * 109.46906 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47473 * 300.00444 * 3 2 1 6 6 H 1.48495 * 109.47458 * 60.00740 * 3 2 1 7 7 C 1.38806 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00271 * 195.94454 * 7 2 1 9 9 N 1.36939 * 119.99985 * 15.94262 * 7 2 1 10 10 C 1.47076 * 120.88416 * 207.65119 * 9 7 2 11 11 C 1.53239 * 108.52432 * 231.20799 * 10 9 7 12 12 N 1.46907 * 109.33797 * 306.16978 * 11 10 9 13 13 C 1.38803 * 110.99804 * 187.25204 * 12 11 10 14 14 S 1.72019 * 127.32297 * 299.34729 * 13 12 11 15 15 N 1.69486 * 96.00554 * 179.97438 * 14 13 12 16 16 C 1.29815 * 107.82392 * 359.76156 * 15 14 13 17 17 Cl 1.73599 * 121.52348 * 180.22182 * 16 15 14 18 18 C 1.38144 * 127.32156 * 119.32491 * 13 12 11 19 19 C 1.48312 * 123.07360 * 359.97438 * 18 13 12 20 20 N 1.33728 * 126.31467 * 354.95367 * 19 18 13 21 21 N 1.28565 * 109.84591 * 179.97438 * 20 19 18 22 22 N 1.28911 * 109.73742 * 0.02562 * 21 20 19 23 23 H 0.97005 * 126.42731 * 179.97438 * 22 21 20 24 24 N 1.32039 * 126.31902 * 174.93130 * 19 18 13 25 25 C 1.46903 * 111.26849 * 63.10394 * 12 11 10 26 26 C 1.47084 * 120.87842 * 27.67577 * 9 7 2 27 27 H 0.96998 * 119.99983 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.62791 * 111.49867 * 10 9 7 29 29 H 1.09001 * 109.62761 * 350.91635 * 10 9 7 30 30 H 1.08995 * 109.49560 * 186.20819 * 11 10 9 31 31 H 1.08998 * 109.49544 * 66.12718 * 11 10 9 32 32 H 1.09002 * 109.49321 * 56.85437 * 25 12 11 33 33 H 1.08994 * 109.49080 * 176.93618 * 25 12 11 34 34 H 1.09005 * 109.62671 * 248.50240 * 26 9 7 35 35 H 1.08997 * 109.63132 * 9.08526 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0591 -1.2202 0.2564 9 7 1.3651 -2.3651 -0.3268 10 6 1.8198 -3.6568 0.2098 11 6 1.9873 -4.6366 -0.9564 12 7 0.7396 -4.6900 -1.7300 13 6 0.7956 -5.6848 -2.6963 14 16 1.9079 -5.8084 -4.0027 15 7 1.2777 -7.2484 -4.6365 16 6 0.2813 -7.6099 -3.8870 17 17 -0.6246 -9.0539 -4.2157 18 6 -0.0297 -6.7864 -2.8131 19 6 -1.1420 -7.0676 -1.8733 20 7 -1.4361 -6.3788 -0.7654 21 7 -2.4626 -6.8960 -0.1895 22 7 -2.8759 -7.9121 -0.8666 23 1 -3.6326 -8.4792 -0.6505 24 7 -2.0250 -8.0440 -1.9763 25 6 0.4307 -3.3867 -2.3335 26 6 0.1994 -2.3556 -1.2237 27 1 -0.4850 0.8400 0.0004 28 1 1.0790 -4.0437 0.9097 29 1 2.7750 -3.5261 0.7184 30 1 2.2170 -5.6287 -0.5677 31 1 2.8002 -4.3005 -1.6000 32 1 1.2653 -3.0680 -2.9579 33 1 -0.4685 -3.4724 -2.9435 34 1 -0.6971 -2.6175 -0.6616 35 1 0.0833 -1.3648 -1.6629 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826382144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:52 Heat of formation + Delta-G solvation = 207.577262 kcal Electronic energy + Delta-G solvation = -25087.907743 eV Core-core repulsion = 21313.235958 eV Total energy + Delta-G solvation = -3774.671784 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.052 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.09539 -39.60350 -38.24295 -36.58216 -34.71948 -33.68229 -32.85799 -31.62223 -30.31705 -29.84268 -26.89351 -24.75808 -24.43148 -22.98658 -22.84666 -22.71524 -20.03433 -19.63639 -18.69070 -18.23590 -16.92764 -16.48770 -16.35681 -15.34540 -15.15440 -14.67641 -14.67098 -14.34630 -14.02730 -13.79846 -13.55217 -13.24029 -12.77835 -12.20553 -11.88201 -11.86190 -11.65654 -11.35661 -11.29916 -11.20935 -10.98511 -10.83629 -10.73941 -10.69508 -10.65681 -10.50545 -10.30100 -9.90122 -9.81516 -9.34739 -8.77123 -8.60526 -8.31179 -6.76076 -5.84730 -3.27916 0.15239 0.70612 0.92125 1.13931 1.59232 2.14778 2.35096 2.76113 3.34287 3.42886 3.44329 3.66488 3.73705 4.16989 4.44721 4.89633 5.07085 5.23505 5.32354 5.36104 5.52280 5.57051 5.68941 5.85019 5.89744 5.97499 6.03087 6.32133 6.44941 6.51916 6.77487 6.99407 7.13900 7.33779 7.56746 7.74422 8.24580 8.35744 9.13395 9.75716 10.33745 11.24434 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.003655 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.185373 B = 7659.933391 C = 8776.460697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.151 3.849 11 C 0.043 3.957 12 N -0.430 5.430 13 C 0.099 3.901 14 S 0.269 5.731 15 N -0.459 5.459 16 C 0.198 3.802 17 Cl 0.020 6.980 18 C -0.108 4.108 19 C 0.279 3.721 20 N -0.247 5.247 21 N 0.005 4.995 22 N -0.307 5.307 23 H 0.466 0.534 24 N -0.285 5.285 25 C 0.035 3.965 26 C 0.181 3.819 27 H 0.255 0.745 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -16.565 -6.239 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.317 5.317 10 C 0.024 3.976 11 C -0.084 4.084 12 N -0.152 5.152 13 C -0.132 4.132 14 S 0.419 5.581 15 N -0.282 5.282 16 C -0.007 4.007 17 Cl 0.047 6.953 18 C -0.131 4.131 19 C -0.005 4.005 20 N -0.124 5.124 21 N 0.008 4.992 22 N -0.153 5.153 23 H 0.320 0.680 24 N -0.129 5.129 25 C -0.093 4.093 26 C 0.055 3.945 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.628 -16.265 -6.916 17.750 hybrid contribution -0.866 -0.081 0.259 0.908 sum -2.494 -16.346 -6.658 17.826 Atomic orbital electron populations 1.70015 1.05207 1.25540 1.53725 1.25059 0.95308 0.98417 1.00608 0.86231 0.79343 0.83917 0.77314 1.20242 1.21558 1.21672 1.19213 0.92293 0.84381 1.42591 0.91396 1.44123 1.33985 1.01667 1.51895 1.20981 0.98734 0.86017 0.91900 1.23034 0.86811 1.01253 0.97342 1.58831 1.34346 1.04206 1.17863 1.25049 0.96234 0.95919 0.95962 1.84721 1.34279 1.19347 1.19746 1.76320 1.14362 1.11164 1.26403 1.21538 0.93931 0.92537 0.92652 1.98436 1.70168 1.31900 1.94775 1.17125 0.99740 0.98004 0.98253 1.22284 0.94267 0.90502 0.93410 1.75881 1.07331 1.22926 1.06305 1.78501 1.05975 0.97049 1.17650 1.51100 1.25760 1.22777 1.15625 0.68010 1.79058 1.05145 1.22318 1.06391 1.23338 0.99856 0.86631 0.99430 1.20897 0.89636 0.95681 0.88292 0.93532 0.94537 0.91722 0.90954 0.93581 0.93773 0.91186 0.94465 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 11.17 55.49 0.62 -24.47 16 2 C 0.00 0.13 4.95 -17.43 -0.09 0.05 16 3 Si 0.90 20.83 29.58 -169.99 -5.03 15.80 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.26 -6.61 9.62 -15.06 -0.14 -6.75 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -13.95 3.03 -172.01 -0.52 -14.47 16 10 C 0.15 2.95 6.69 -3.60 -0.02 2.92 16 11 C 0.04 0.71 5.43 -3.70 -0.02 0.69 16 12 N -0.43 -7.21 3.96 -172.22 -0.68 -7.89 16 13 C 0.10 1.48 5.09 -14.43 -0.07 1.41 16 14 S 0.27 3.58 23.39 -107.50 -2.51 1.07 16 15 N -0.46 -6.50 12.03 31.79 0.38 -6.12 16 16 C 0.20 2.77 7.26 -18.17 -0.13 2.64 16 17 Cl 0.02 0.24 27.07 -51.86 -1.40 -1.16 16 18 C -0.11 -1.61 5.89 -105.56 -0.62 -2.23 16 19 C 0.28 4.23 7.95 -156.43 -1.24 2.98 16 20 N -0.25 -4.06 11.61 32.11 0.37 -3.69 16 21 N 0.00 0.06 13.42 60.35 0.81 0.87 16 22 N -0.31 -3.23 8.44 60.35 0.51 -2.72 16 23 H 0.47 2.60 8.96 -331.92 -2.98 -0.38 16 24 N -0.28 -3.69 10.88 32.12 0.35 -3.34 16 25 C 0.03 0.62 5.47 -3.70 -0.02 0.60 16 26 C 0.18 4.07 5.40 -3.60 -0.02 4.05 16 27 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.20 7.95 -51.93 -0.41 0.79 16 30 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 31 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 2.38 6.17 -51.93 -0.32 2.06 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -29.85 327.64 -10.34 -40.19 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -5.78 Total: -5.37 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -2.39 Total: 6.36 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: 1.84 Total: -61.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.51 Total: 1.07 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.40 Total: -1.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.85 -10.34 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.768 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 217.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 207.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds