Wall clock time and date at job start Sat Apr 11 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99742 * 2 1 4 4 H 1.48498 * 109.46906 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47473 * 300.00444 * 3 2 1 6 6 H 1.48495 * 109.47458 * 60.00740 * 3 2 1 7 7 C 1.38806 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00271 * 195.94454 * 7 2 1 9 9 N 1.36939 * 119.99985 * 15.94262 * 7 2 1 10 10 C 1.47076 * 120.88416 * 207.65119 * 9 7 2 11 11 C 1.53239 * 108.52432 * 231.20799 * 10 9 7 12 12 N 1.46907 * 109.33797 * 306.16978 * 11 10 9 13 13 C 1.38803 * 110.99804 * 187.25204 * 12 11 10 14 14 S 1.72019 * 127.32297 * 299.34729 * 13 12 11 15 15 N 1.69486 * 96.00554 * 179.97438 * 14 13 12 16 16 C 1.29815 * 107.82392 * 359.76156 * 15 14 13 17 17 Cl 1.73599 * 121.52348 * 180.22182 * 16 15 14 18 18 C 1.38144 * 127.32156 * 119.32491 * 13 12 11 19 19 C 1.48312 * 123.07360 * 359.97438 * 18 13 12 20 20 N 1.33728 * 126.31467 * 354.95367 * 19 18 13 21 21 N 1.28565 * 109.84591 * 179.97438 * 20 19 18 22 22 N 1.28911 * 109.73742 * 0.02562 * 21 20 19 23 23 H 0.97005 * 126.42731 * 179.97438 * 22 21 20 24 24 N 1.32039 * 126.31902 * 174.93130 * 19 18 13 25 25 C 1.46903 * 111.26849 * 63.10394 * 12 11 10 26 26 C 1.47084 * 120.87842 * 27.67577 * 9 7 2 27 27 H 0.96998 * 119.99983 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.62791 * 111.49867 * 10 9 7 29 29 H 1.09001 * 109.62761 * 350.91635 * 10 9 7 30 30 H 1.08995 * 109.49560 * 186.20819 * 11 10 9 31 31 H 1.08998 * 109.49544 * 66.12718 * 11 10 9 32 32 H 1.09002 * 109.49321 * 56.85437 * 25 12 11 33 33 H 1.08994 * 109.49080 * 176.93618 * 25 12 11 34 34 H 1.09005 * 109.62671 * 248.50240 * 26 9 7 35 35 H 1.08997 * 109.63132 * 9.08526 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0591 -1.2202 0.2564 9 7 1.3651 -2.3651 -0.3268 10 6 1.8198 -3.6568 0.2098 11 6 1.9873 -4.6366 -0.9564 12 7 0.7396 -4.6900 -1.7300 13 6 0.7956 -5.6848 -2.6963 14 16 1.9079 -5.8084 -4.0027 15 7 1.2777 -7.2484 -4.6365 16 6 0.2813 -7.6099 -3.8870 17 17 -0.6246 -9.0539 -4.2157 18 6 -0.0297 -6.7864 -2.8131 19 6 -1.1420 -7.0676 -1.8733 20 7 -1.4361 -6.3788 -0.7654 21 7 -2.4626 -6.8960 -0.1895 22 7 -2.8759 -7.9121 -0.8666 23 1 -3.6326 -8.4792 -0.6505 24 7 -2.0250 -8.0440 -1.9763 25 6 0.4307 -3.3867 -2.3335 26 6 0.1994 -2.3556 -1.2237 27 1 -0.4850 0.8400 0.0004 28 1 1.0790 -4.0437 0.9097 29 1 2.7750 -3.5261 0.7184 30 1 2.2170 -5.6287 -0.5677 31 1 2.8002 -4.3005 -1.6000 32 1 1.2653 -3.0680 -2.9579 33 1 -0.4685 -3.4724 -2.9435 34 1 -0.6971 -2.6175 -0.6616 35 1 0.0833 -1.3648 -1.6629 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826382144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:51 Heat of formation + Delta-G solvation = 187.239505 kcal Electronic energy + Delta-G solvation = -25088.789654 eV Core-core repulsion = 21313.235958 eV Total energy + Delta-G solvation = -3775.553696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.052 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.16286 -40.80891 -39.56159 -37.64254 -36.34015 -34.80014 -33.92919 -33.36796 -31.82226 -31.21243 -28.48758 -26.11329 -25.55507 -24.53259 -24.40122 -23.85840 -21.22456 -21.13582 -19.75922 -19.51245 -18.51134 -17.64288 -17.56049 -16.87022 -16.40128 -16.27134 -15.84393 -15.61671 -15.28298 -15.26839 -15.08823 -15.01201 -14.24920 -13.33506 -13.30557 -13.08699 -12.99720 -12.84681 -12.65129 -12.41342 -12.36923 -12.30729 -12.14507 -12.06194 -12.00661 -11.76386 -11.75590 -11.70223 -11.56118 -10.61499 -10.45002 -9.82034 -9.62423 -8.67032 -7.83837 -5.29250 -0.98029 -0.33987 -0.12929 0.03071 0.48914 1.19412 1.34115 1.50924 1.53869 1.63232 1.63771 2.44274 2.56409 2.61847 3.10655 3.33389 3.64321 3.75403 3.96698 4.11794 4.17423 4.29081 4.39735 4.44377 4.49924 4.57884 4.80691 4.87081 4.93581 5.15986 5.35410 5.66644 5.69430 5.76799 5.79320 5.87515 6.40996 7.17125 7.17216 7.85849 8.40613 9.23856 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.003655 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.185373 B = 7659.933391 C = 8776.460697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.297 1.297 7 C -0.259 4.259 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.150 3.850 11 C 0.054 3.946 12 N -0.441 5.441 13 C 0.081 3.919 14 S 0.316 5.684 15 N -0.467 5.467 16 C 0.196 3.804 17 Cl 0.034 6.966 18 C -0.107 4.107 19 C 0.266 3.734 20 N -0.284 5.284 21 N -0.005 5.005 22 N -0.273 5.273 23 H 0.487 0.513 24 N -0.279 5.279 25 C 0.052 3.948 26 C 0.193 3.807 27 H 0.249 0.751 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.003 0.997 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.439 -18.181 -7.278 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.389 4.389 8 H 0.091 0.909 9 N -0.333 5.333 10 C 0.024 3.976 11 C -0.073 4.073 12 N -0.164 5.164 13 C -0.149 4.149 14 S 0.466 5.534 15 N -0.291 5.291 16 C -0.009 4.009 17 Cl 0.062 6.938 18 C -0.130 4.130 19 C -0.018 4.018 20 N -0.161 5.161 21 N -0.001 5.001 22 N -0.124 5.124 23 H 0.346 0.654 24 N -0.124 5.124 25 C -0.075 4.075 26 C 0.066 3.934 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.021 0.979 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.724 -17.925 -7.951 19.623 hybrid contribution -1.222 0.243 0.589 1.378 sum -1.946 -17.682 -7.362 19.252 Atomic orbital electron populations 1.70176 1.06633 1.25735 1.55543 1.25763 0.95949 1.01336 1.01180 0.85250 0.78767 0.80102 0.76555 1.18903 1.21817 1.22390 1.19561 0.92670 0.85395 1.41307 0.90904 1.44369 1.33936 1.02476 1.52563 1.21064 0.98408 0.85024 0.93143 1.22859 0.86994 1.01265 0.96182 1.58596 1.35058 1.03736 1.18977 1.24812 0.97593 0.95791 0.96729 1.84551 1.32550 1.18425 1.17827 1.76284 1.14511 1.11712 1.26618 1.21520 0.94002 0.92994 0.92336 1.98439 1.69809 1.30934 1.94640 1.17250 0.99502 0.98008 0.98287 1.22369 0.94926 0.90980 0.93486 1.75862 1.08537 1.24309 1.07375 1.78443 1.05895 0.97854 1.17931 1.51107 1.25354 1.21749 1.14211 0.65443 1.79009 1.04919 1.21671 1.06813 1.22953 1.00665 0.86383 0.97509 1.20542 0.88300 0.95591 0.88928 0.94142 0.96196 0.90786 0.88714 0.92617 0.92984 0.90249 0.97893 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 11.17 21.65 0.24 -53.54 16 2 C -0.05 -2.51 4.95 84.86 0.42 -2.09 16 3 Si 0.96 43.29 29.58 68.60 2.03 45.32 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.26 -13.50 9.62 84.03 0.81 -12.69 16 8 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 9 N -0.61 -29.02 3.03 -698.12 -2.12 -31.14 16 10 C 0.15 5.82 6.69 86.35 0.58 6.40 16 11 C 0.05 1.69 5.43 86.38 0.47 2.16 16 12 N -0.44 -14.37 3.96 -698.80 -2.77 -17.14 16 13 C 0.08 2.28 5.09 83.57 0.42 2.71 16 14 S 0.32 7.61 23.39 -56.49 -1.32 6.29 16 15 N -0.47 -12.08 12.03 -53.34 -0.64 -12.72 16 16 C 0.20 5.05 7.26 85.14 0.62 5.67 16 17 Cl 0.03 0.76 27.07 -2.72 -0.07 0.69 16 18 C -0.11 -3.01 5.89 -20.47 -0.12 -3.13 16 19 C 0.27 7.71 7.95 137.36 1.09 8.80 16 20 N -0.28 -9.19 11.61 -52.33 -0.61 -9.80 16 21 N -0.01 -0.14 13.42 37.02 0.50 0.36 16 22 N -0.27 -5.26 8.44 37.02 0.31 -4.95 16 23 H 0.49 4.30 8.96 -340.34 -3.05 1.25 16 24 N -0.28 -6.71 10.88 -52.29 -0.57 -7.27 16 25 C 0.05 1.87 5.47 86.38 0.47 2.34 16 26 C 0.19 8.94 5.40 86.35 0.47 9.40 16 27 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.07 2.69 7.95 -2.39 -0.02 2.67 16 30 H 0.09 2.54 8.09 -2.39 -0.02 2.52 16 31 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.65 8.09 -2.39 -0.02 2.63 16 34 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 35 H 0.07 3.43 6.17 -2.39 -0.01 3.41 16 Total: -1.00 -64.74 327.64 -1.66 -66.40 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: -1.87 Total: -2.07 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 5.23 Total: 19.58 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -5.65 Total: -136.21 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 7.61 SS G_CDS: -1.32 Total: 6.29 kcal Atomic # 17 Polarization: 0.76 SS G_CDS: -0.07 Total: 0.69 kcal Total: -64.74 -1.66 -66.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.637 kcal (2) G-P(sol) polarization free energy of solvation -64.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds