Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.46835 * 2 1 4 4 O 1.21253 * 120.00032 * 359.97438 * 3 2 1 5 5 C 1.47164 * 119.99822 * 179.97438 * 3 2 1 6 6 C 1.39872 * 120.17231 * 359.72943 * 5 3 2 7 7 C 1.37870 * 119.82443 * 179.72031 * 6 5 3 8 8 C 1.38427 * 120.16920 * 0.55210 * 7 6 5 9 9 C 1.38384 * 120.35110 * 359.71826 * 8 7 6 10 10 S 1.76198 * 119.91543 * 180.02562 * 9 8 7 11 11 O 1.42107 * 106.40177 * 23.51837 * 10 9 8 12 12 O 1.42101 * 106.40436 * 156.43872 * 10 9 8 13 13 N 1.65606 * 107.21764 * 269.98153 * 10 9 8 14 14 C 1.36931 * 120.00016 * 89.99668 * 13 10 9 15 15 H 1.07996 * 120.00548 * 326.59870 * 14 13 10 16 16 C 1.38817 * 119.99577 * 146.60261 * 14 13 10 17 17 N 1.31614 * 120.00071 * 336.19375 * 16 14 13 18 18 Si 1.86807 * 119.99772 * 156.19812 * 16 14 13 19 19 H 1.48493 * 109.46971 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46660 * 119.99568 * 18 16 14 21 21 H 1.48493 * 109.46856 * 239.99565 * 18 16 14 22 22 C 1.46503 * 119.99754 * 270.00105 * 13 10 9 23 23 C 1.50695 * 109.47184 * 96.18025 * 22 13 10 24 24 O 1.20825 * 120.00316 * 359.97438 * 23 22 13 25 25 O 1.34232 * 119.99873 * 179.97438 * 23 22 13 26 26 C 1.37909 * 120.16943 * 0.02562 * 9 8 7 27 27 H 1.08998 * 109.47181 * 60.00512 * 1 2 3 28 28 H 1.09007 * 109.46720 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47348 * 299.99785 * 1 2 3 30 30 H 1.08998 * 109.47181 * 119.99488 * 2 1 3 31 31 H 1.08997 * 109.47348 * 240.00215 * 2 1 3 32 32 H 1.08001 * 120.09026 * 359.97438 * 6 5 3 33 33 H 1.07993 * 119.91656 * 180.24990 * 7 6 5 34 34 H 1.08000 * 119.82460 * 179.74742 * 8 7 6 35 35 H 0.96998 * 120.00087 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46638 * 216.18196 * 22 13 10 37 37 H 1.09000 * 109.46760 * 336.18177 * 22 13 10 38 38 H 0.96703 * 116.99622 * 179.97438 * 25 23 22 39 39 H 1.08004 * 120.08328 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2443 2.3425 -0.0005 5 6 3.4791 1.6898 0.0006 6 6 4.3912 0.6295 0.0068 7 6 5.7451 0.8896 0.0015 8 6 6.2025 2.1961 0.0015 9 6 5.3064 3.2507 0.0010 10 16 5.9012 4.9092 0.0003 11 8 7.2133 4.8648 -0.5436 12 8 4.8606 5.7086 -0.5450 13 7 6.0661 5.3715 1.5820 14 6 7.2505 5.1623 2.2365 15 1 7.8517 4.2964 2.0017 16 6 7.6784 6.0632 3.2021 17 7 7.2466 7.3063 3.1797 18 14 8.8673 5.5111 4.5331 19 1 9.1978 4.0767 4.3375 20 1 10.1095 6.3211 4.4541 21 1 8.2391 5.6967 5.8657 22 6 4.9447 6.0043 2.2809 23 6 4.1898 4.9626 3.0657 24 8 4.5510 3.8098 3.0432 25 8 3.1160 5.3154 3.7898 26 6 3.9491 3.0068 0.0010 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 4.0359 -0.3904 0.0117 33 1 6.4507 0.0720 0.0022 34 1 7.2643 2.3935 0.0014 35 1 7.5459 7.9359 3.8541 36 1 5.3243 6.7671 2.9607 37 1 4.2770 6.4656 1.5533 38 1 2.6642 4.6122 4.2761 39 1 3.2510 3.8309 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828580777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -162.710523 kcal Electronic energy + Delta-G solvation = -28626.362324 eV Core-core repulsion = 24433.879333 eV Total energy + Delta-G solvation = -4192.482991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.04604 -39.41432 -38.15286 -36.36709 -35.94558 -35.00980 -34.89763 -33.21398 -31.54205 -31.27047 -31.03399 -27.70797 -25.65325 -24.30108 -23.37777 -22.33430 -21.04736 -20.07027 -18.62356 -17.94983 -17.40716 -17.06530 -16.69135 -15.90966 -15.89912 -15.59053 -15.52037 -15.23459 -14.94683 -14.75846 -14.52752 -14.10065 -13.77861 -13.46593 -13.36949 -12.60775 -12.56216 -12.49685 -12.21462 -11.93715 -11.89299 -11.58956 -11.53034 -11.37914 -11.33664 -11.17614 -11.05071 -10.92257 -10.86486 -10.61243 -10.41404 -10.32511 -9.88125 -9.69836 -9.37742 -9.14427 -8.92252 -7.98203 -6.42330 -4.11438 0.62289 1.10166 1.34268 2.35041 3.01889 3.14167 3.23965 3.29407 3.53784 3.71002 3.87270 4.11798 4.35606 4.55262 4.69246 4.79954 4.88892 4.89105 4.96110 4.97069 5.17919 5.28056 5.40388 5.56783 5.65189 5.70872 5.78756 5.90979 5.97750 5.99128 6.03282 6.18986 6.26903 6.29035 6.62142 6.85961 7.02677 7.16466 7.47684 7.50767 8.21278 8.66285 8.79977 9.19519 10.61969 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.004540 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.413766 B = 6165.904279 C = 6598.497204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.169 4.169 3 C 0.396 3.604 4 O -0.451 6.451 5 C -0.198 4.198 6 C -0.032 4.032 7 C -0.155 4.155 8 C 0.020 3.980 9 C -0.661 4.661 10 S 2.652 3.348 11 O -0.956 6.956 12 O -0.987 6.987 13 N -0.822 5.822 14 C -0.290 4.290 15 H 0.096 0.904 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.918 3.082 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.118 3.882 23 C 0.450 3.550 24 O -0.507 6.507 25 O -0.527 6.527 26 C 0.042 3.958 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.144 0.856 35 H 0.271 0.729 36 H 0.159 0.841 37 H 0.107 0.893 38 H 0.393 0.607 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 -12.765 -2.055 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.274 3.726 4 O -0.327 6.327 5 C -0.200 4.200 6 C -0.050 4.050 7 C -0.174 4.174 8 C 0.001 3.999 9 C -0.744 4.744 10 S 2.747 3.253 11 O -0.946 6.946 12 O -0.977 6.977 13 N -0.652 5.652 14 C -0.424 4.424 15 H 0.114 0.886 16 C -0.168 4.168 17 N -0.502 5.502 18 Si 0.744 3.256 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.206 1.206 22 C -0.012 4.012 23 C 0.290 3.710 24 O -0.394 6.394 25 O -0.337 6.337 26 C 0.023 3.977 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.081 0.919 36 H 0.175 0.825 37 H 0.125 0.875 38 H 0.250 0.750 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.524 -11.681 -3.032 14.222 hybrid contribution 0.138 -1.528 1.520 2.160 sum -7.386 -13.209 -1.512 15.209 Atomic orbital electron populations 1.21592 0.93594 1.01678 1.03226 1.21983 0.98391 0.95750 1.04539 1.22486 0.87697 0.91254 0.71173 1.90528 1.58202 1.47762 1.36167 1.20500 0.94970 0.94489 1.10034 1.21551 0.93208 0.98255 0.92030 1.21201 0.95582 0.97026 1.03566 1.21204 0.99954 0.91775 0.87010 1.31447 1.01777 1.26122 1.15104 1.03837 0.73197 0.73740 0.74568 1.93484 1.37355 1.86443 1.77320 1.93466 1.59720 1.66117 1.78422 1.52340 1.15771 1.72525 1.24600 1.19085 0.97081 1.07123 1.19070 0.88627 1.25298 0.97586 0.93768 1.00118 1.69866 1.44167 1.01994 1.34182 0.86016 0.79745 0.79340 0.80493 1.19106 1.20545 1.20638 1.21077 0.87441 0.94092 0.98543 1.25332 0.77361 0.90979 0.77344 1.90634 1.65696 1.21427 1.61602 1.84628 1.42845 1.45806 1.60435 1.21040 0.93768 0.96762 0.86135 0.92058 0.92095 0.92041 0.88332 0.88382 0.84958 0.84787 0.83810 0.91866 0.82480 0.87520 0.74978 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.20 37.15 0.34 -0.95 16 2 C -0.17 -1.54 5.03 -27.88 -0.14 -1.68 16 3 C 0.40 5.52 7.12 -30.68 -0.22 5.31 16 4 O -0.45 -7.72 15.98 5.58 0.09 -7.64 16 5 C -0.20 -3.04 5.87 -105.07 -0.62 -3.66 16 6 C -0.03 -0.40 9.47 -39.11 -0.37 -0.77 16 7 C -0.16 -2.07 10.03 -39.65 -0.40 -2.46 16 8 C 0.02 0.33 9.52 -39.46 -0.38 -0.04 16 9 C -0.66 -12.86 5.79 -39.65 -0.23 -13.09 16 10 S 2.65 60.12 5.65 -107.50 -0.61 59.51 16 11 O -0.96 -23.42 16.48 -57.17 -0.94 -24.36 16 12 O -0.99 -23.31 15.82 -57.17 -0.90 -24.22 16 13 N -0.82 -19.62 2.39 -61.09 -0.15 -19.77 16 14 C -0.29 -7.33 8.71 -15.06 -0.13 -7.46 16 15 H 0.10 2.36 7.93 -52.49 -0.42 1.94 16 16 C 0.04 0.97 4.99 -17.43 -0.09 0.88 16 17 N -0.86 -21.98 11.26 55.49 0.62 -21.35 16 18 Si 0.92 19.75 29.62 -169.99 -5.03 14.72 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 22 C 0.12 2.62 5.89 -5.19 -0.03 2.59 16 23 C 0.45 9.23 8.36 36.00 0.30 9.53 16 24 O -0.51 -11.18 16.79 -18.75 -0.31 -11.50 16 25 O -0.53 -8.88 13.42 -39.26 -0.53 -9.41 16 26 C 0.04 0.79 8.98 -39.11 -0.35 0.43 16 27 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.13 1.07 7.05 -52.49 -0.37 0.70 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.14 2.32 7.60 -52.49 -0.40 1.92 16 35 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 36 H 0.16 3.68 5.31 -51.93 -0.28 3.41 16 37 H 0.11 2.21 6.89 -51.93 -0.36 1.85 16 38 H 0.39 4.80 9.10 45.56 0.41 5.22 16 39 H 0.14 2.72 7.20 -52.48 -0.38 2.34 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -33.00 355.66 -8.15 -41.16 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -3.44 Total: 8.88 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -2.31 Total: -11.38 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.48 Total: -41.12 kcal Atomic # 8 Polarization: -74.52 SS G_CDS: -2.60 Total: -77.12 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Atomic # 16 Polarization: 60.12 SS G_CDS: -0.61 Total: 59.51 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.00 -8.15 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828580777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.555 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds