Wall clock time and date at job start Sat Apr 11 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38174 * 119.97034 * 2 1 4 4 C 1.38710 * 119.93790 * 180.02562 * 3 2 1 5 5 O 1.35908 * 120.04949 * 179.97438 * 4 3 2 6 6 S 1.52200 * 113.99604 * 90.00066 * 5 4 3 7 7 O 1.42106 * 104.27424 * 191.06653 * 6 5 4 8 8 O 1.42100 * 104.27966 * 318.92560 * 6 5 4 9 9 C 1.81402 * 104.45060 * 75.00019 * 6 5 4 10 10 C 1.53000 * 109.47056 * 169.85791 * 9 6 5 11 11 C 1.50693 * 115.55319 * 67.29585 * 10 9 6 12 12 H 1.07992 * 120.00359 * 264.45023 * 11 10 9 13 13 C 1.37883 * 119.99617 * 84.44748 * 11 10 9 14 14 N 1.31507 * 120.00177 * 1.65628 * 13 11 10 15 15 Si 1.86807 * 119.99672 * 181.65324 * 13 11 10 16 16 H 1.48502 * 109.47038 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46809 * 120.00169 * 15 13 11 18 18 H 1.48498 * 109.47222 * 240.00275 * 15 13 11 19 19 C 1.53008 * 117.49673 * 281.62338 * 10 9 6 20 20 C 1.53004 * 117.49637 * 212.96616 * 10 9 6 21 21 C 1.38751 * 119.89160 * 0.25202 * 4 3 2 22 22 C 1.38121 * 119.94285 * 359.51799 * 21 4 3 23 23 C 1.38240 * 119.97132 * 180.02562 * 2 1 3 24 24 N 1.48004 * 119.94602 * 359.97438 * 23 2 1 25 25 O 1.21796 * 120.00081 * 218.16158 * 24 23 2 26 26 O 1.21800 * 119.99693 * 38.15936 * 24 23 2 27 27 H 1.08997 * 109.46990 * 106.17003 * 1 2 3 28 28 H 1.08996 * 109.47254 * 226.17531 * 1 2 3 29 29 H 1.09004 * 109.47045 * 346.17570 * 1 2 3 30 30 H 1.07995 * 120.02938 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46911 * 289.85709 * 9 6 5 32 32 H 1.09001 * 109.47229 * 49.85530 * 9 6 5 33 33 H 0.97004 * 119.99519 * 185.01126 * 14 13 11 34 34 H 1.08996 * 117.49551 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.49602 * 145.01977 * 19 10 9 36 36 H 1.08997 * 117.50259 * 214.97720 * 20 10 9 37 37 H 1.09002 * 117.49588 * 359.97438 * 20 10 9 38 38 H 1.08005 * 120.02426 * 179.72389 * 21 4 3 39 39 H 1.08000 * 119.96693 * 180.23488 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1970 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2656 2.3722 -0.0011 6 16 4.5764 2.9081 1.3892 7 8 5.0379 4.2323 1.1591 8 8 3.3898 2.6645 2.1321 9 6 5.9289 1.8576 1.9873 10 6 6.5050 2.4515 3.2743 11 6 5.5864 2.4289 4.4686 12 1 4.9909 3.2973 4.7084 13 6 5.5061 1.2994 5.2553 14 7 6.2552 0.2535 4.9826 15 14 4.3332 1.2548 6.7086 16 1 3.6086 2.5478 6.7997 17 1 3.3560 0.1523 6.5223 18 1 5.1023 1.0287 7.9586 19 6 7.4584 3.6405 3.1387 20 6 8.0017 2.2641 3.5306 21 6 4.2752 -0.0071 -0.0064 22 6 3.5805 -1.2009 -0.0015 23 6 2.1976 -1.1975 -0.0005 24 7 1.4557 -2.4782 -0.0005 25 8 1.8684 -3.4210 0.6508 26 8 0.4326 -2.5892 -0.6519 27 1 -0.3633 -0.2862 -0.9870 28 1 -0.3633 -0.7116 0.7414 29 1 -0.3633 0.9979 0.2456 30 1 1.6573 2.1322 -0.0004 31 1 5.5494 0.8557 2.1875 32 1 6.7107 1.8053 1.2295 33 1 6.1471 -0.5660 5.4901 34 1 7.6749 3.9998 2.1327 35 1 7.4214 4.4062 3.9136 36 1 8.3220 2.1249 4.5632 37 1 8.5758 1.7174 2.7826 38 1 5.3552 -0.0102 -0.0113 39 1 4.1178 -2.1377 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829804258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:03 Heat of formation + Delta-G solvation = -54.858825 kcal Electronic energy + Delta-G solvation = -28362.782799 eV Core-core repulsion = 24174.976608 eV Total energy + Delta-G solvation = -4187.806191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43207 -41.25484 -38.67476 -36.95692 -36.71958 -36.69638 -35.62365 -33.39980 -32.17303 -31.67475 -28.71215 -28.00647 -26.25872 -25.63483 -23.36630 -22.84964 -21.32898 -20.75578 -19.59306 -19.33113 -18.88267 -18.11625 -17.94890 -17.39220 -17.07180 -16.24946 -15.49948 -15.13986 -15.05025 -14.78823 -14.33520 -14.16054 -13.91225 -13.74766 -13.44544 -13.31383 -12.81106 -12.59557 -12.28159 -12.13871 -11.97977 -11.71046 -11.69055 -11.65873 -11.61136 -11.27316 -11.21515 -11.16114 -11.05011 -10.80834 -10.57744 -10.26576 -9.82665 -9.65997 -9.51733 -9.19517 -8.67724 -8.27437 -6.27322 -4.40165 -0.43618 0.49121 0.55040 0.99953 1.19408 2.34822 2.77633 3.20217 3.29343 3.35541 3.93245 3.96718 4.02868 4.18047 4.26577 4.34606 4.47489 4.69911 4.87035 4.98429 5.03038 5.09680 5.16801 5.24165 5.33104 5.46777 5.54196 5.63774 5.66104 5.71739 6.01153 6.05529 6.20601 6.27512 6.42137 6.61503 6.83842 7.06365 7.31977 7.48429 7.66610 8.04370 8.67201 9.32985 10.80169 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.004653 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.498204 B = 6016.026526 C = 7104.199381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.005 4.005 3 C -0.097 4.097 4 C 0.140 3.860 5 O -0.681 6.681 6 S 2.578 3.422 7 O -0.929 6.929 8 O -0.941 6.941 9 C -0.572 4.572 10 C 0.038 3.962 11 C -0.517 4.517 12 H 0.069 0.931 13 C 0.082 3.918 14 N -0.872 5.872 15 Si 0.890 3.110 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.281 1.281 19 C -0.207 4.207 20 C -0.132 4.132 21 C -0.132 4.132 22 C -0.033 4.033 23 C -0.039 4.039 24 N 0.027 4.973 25 O -0.149 6.149 26 O -0.149 6.149 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.108 0.892 33 H 0.264 0.736 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.166 0.834 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 -2.387 -12.111 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.006 4.006 3 C -0.117 4.117 4 C 0.098 3.902 5 O -0.639 6.639 6 S 2.679 3.321 7 O -0.927 6.927 8 O -0.939 6.939 9 C -0.704 4.704 10 C 0.036 3.964 11 C -0.554 4.554 12 H 0.088 0.912 13 C -0.124 4.124 14 N -0.507 5.507 15 Si 0.716 3.284 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.207 1.207 19 C -0.244 4.244 20 C -0.171 4.171 21 C -0.152 4.152 22 C -0.052 4.052 23 C -0.122 4.122 24 N 0.550 4.450 25 O -0.367 6.367 26 O -0.367 6.367 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.180 0.820 31 H 0.154 0.846 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.183 0.817 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.373 -1.266 -12.247 13.434 hybrid contribution 0.014 -0.818 0.977 1.274 sum -5.359 -2.083 -11.270 12.652 Atomic orbital electron populations 1.21101 0.87882 1.04709 1.04700 1.19564 0.98179 0.89398 0.93487 1.21220 0.92104 0.98971 0.99407 1.18233 0.90523 0.81947 0.99488 1.85854 1.75414 1.42082 1.60500 1.06062 0.77677 0.76506 0.71906 1.93569 1.83200 1.33734 1.82217 1.93603 1.44704 1.85633 1.69988 1.30271 1.16089 1.15483 1.08512 1.18250 0.91032 0.96655 0.90469 1.20570 1.24686 1.00988 1.09199 0.91242 1.24963 0.94681 0.95575 0.97141 1.69990 1.36954 1.02690 1.41062 0.86545 0.80910 0.78871 0.82029 1.19110 1.20484 1.20702 1.23233 1.07803 0.92439 1.00975 1.22556 0.96915 0.96594 1.01054 1.21377 1.02408 0.89563 1.01863 1.20742 0.90456 1.00093 0.93893 1.20973 0.92539 0.83570 1.15075 1.43473 1.00528 1.02350 0.98636 1.94594 1.71417 1.30648 1.40083 1.94522 1.12833 1.89206 1.40174 0.88226 0.90286 0.89581 0.81995 0.84577 0.87310 0.92616 0.90563 0.89292 0.89123 0.91498 0.81684 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.51 36.01 0.31 -0.91 16 2 C 0.00 -0.06 5.87 -104.64 -0.61 -0.67 16 3 C -0.10 -1.25 8.67 -39.43 -0.34 -1.59 16 4 C 0.14 1.99 4.79 -39.22 -0.19 1.80 16 5 O -0.68 -10.60 10.05 -51.78 -0.52 -11.12 16 6 S 2.58 49.19 4.92 -107.50 -0.53 48.66 16 7 O -0.93 -19.71 17.90 -67.04 -1.20 -20.91 16 8 O -0.94 -19.96 16.24 -67.04 -1.09 -21.04 16 9 C -0.57 -10.94 5.03 37.16 0.19 -10.76 16 10 C 0.04 0.87 1.36 -155.66 -0.21 0.66 16 11 C -0.52 -13.41 8.54 -34.44 -0.29 -13.70 16 12 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 13 C 0.08 2.13 5.43 -17.82 -0.10 2.04 16 14 N -0.87 -22.86 12.74 55.43 0.71 -22.16 16 15 Si 0.89 20.72 29.54 -169.99 -5.02 15.69 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.21 -4.30 9.77 -26.69 -0.26 -4.56 16 20 C -0.13 -2.84 9.24 -26.69 -0.25 -3.08 16 21 C -0.13 -1.59 8.66 -39.43 -0.34 -1.93 16 22 C -0.03 -0.38 9.66 -39.61 -0.38 -0.76 16 23 C -0.04 -0.50 6.47 -79.94 -0.52 -1.01 16 24 N 0.03 0.37 4.20 33.97 0.14 0.51 16 25 O -0.15 -2.21 18.96 -29.46 -0.56 -2.77 16 26 O -0.15 -1.98 16.83 -29.46 -0.50 -2.47 16 27 H 0.10 0.81 7.71 -51.93 -0.40 0.41 16 28 H 0.08 0.80 7.65 -51.93 -0.40 0.41 16 29 H 0.09 0.67 7.94 -51.93 -0.41 0.26 16 30 H 0.16 1.80 7.99 -52.49 -0.42 1.38 16 31 H 0.14 2.61 7.35 -51.92 -0.38 2.23 16 32 H 0.11 1.68 8.08 -51.92 -0.42 1.26 16 33 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 36 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.17 1.56 7.72 -52.48 -0.40 1.16 16 39 H 0.16 1.49 8.02 -52.49 -0.42 1.07 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -31.12 355.86 -10.70 -41.81 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.49 Total: 2.91 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: -3.00 Total: -34.49 kcal Atomic # 7 Polarization: -22.49 SS G_CDS: 0.85 Total: -21.65 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -3.86 Total: -58.31 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 49.19 SS G_CDS: -0.53 Total: 48.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.12 -10.70 -41.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829804258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.045 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds