Wall clock time and date at job start Sat Apr 11 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38174 * 119.97034 * 2 1 4 4 C 1.38710 * 119.93790 * 180.02562 * 3 2 1 5 5 O 1.35908 * 120.04949 * 179.97438 * 4 3 2 6 6 S 1.52200 * 113.99604 * 90.00066 * 5 4 3 7 7 O 1.42106 * 104.27424 * 191.06653 * 6 5 4 8 8 O 1.42100 * 104.27966 * 318.92560 * 6 5 4 9 9 C 1.81402 * 104.45060 * 75.00019 * 6 5 4 10 10 C 1.53000 * 109.47056 * 169.85791 * 9 6 5 11 11 C 1.50693 * 115.55319 * 67.29585 * 10 9 6 12 12 H 1.07992 * 120.00359 * 264.45023 * 11 10 9 13 13 C 1.37883 * 119.99617 * 84.44748 * 11 10 9 14 14 N 1.31507 * 120.00177 * 1.65628 * 13 11 10 15 15 Si 1.86807 * 119.99672 * 181.65324 * 13 11 10 16 16 H 1.48502 * 109.47038 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46809 * 120.00169 * 15 13 11 18 18 H 1.48498 * 109.47222 * 240.00275 * 15 13 11 19 19 C 1.53008 * 117.49673 * 281.62338 * 10 9 6 20 20 C 1.53004 * 117.49637 * 212.96616 * 10 9 6 21 21 C 1.38751 * 119.89160 * 0.25202 * 4 3 2 22 22 C 1.38121 * 119.94285 * 359.51799 * 21 4 3 23 23 C 1.38240 * 119.97132 * 180.02562 * 2 1 3 24 24 N 1.48004 * 119.94602 * 359.97438 * 23 2 1 25 25 O 1.21796 * 120.00081 * 218.16158 * 24 23 2 26 26 O 1.21800 * 119.99693 * 38.15936 * 24 23 2 27 27 H 1.08997 * 109.46990 * 106.17003 * 1 2 3 28 28 H 1.08996 * 109.47254 * 226.17531 * 1 2 3 29 29 H 1.09004 * 109.47045 * 346.17570 * 1 2 3 30 30 H 1.07995 * 120.02938 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46911 * 289.85709 * 9 6 5 32 32 H 1.09001 * 109.47229 * 49.85530 * 9 6 5 33 33 H 0.97004 * 119.99519 * 185.01126 * 14 13 11 34 34 H 1.08996 * 117.49551 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.49602 * 145.01977 * 19 10 9 36 36 H 1.08997 * 117.50259 * 214.97720 * 20 10 9 37 37 H 1.09002 * 117.49588 * 359.97438 * 20 10 9 38 38 H 1.08005 * 120.02426 * 179.72389 * 21 4 3 39 39 H 1.08000 * 119.96693 * 180.23488 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1970 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2656 2.3722 -0.0011 6 16 4.5764 2.9081 1.3892 7 8 5.0379 4.2323 1.1591 8 8 3.3898 2.6645 2.1321 9 6 5.9289 1.8576 1.9873 10 6 6.5050 2.4515 3.2743 11 6 5.5864 2.4289 4.4686 12 1 4.9909 3.2973 4.7084 13 6 5.5061 1.2994 5.2553 14 7 6.2552 0.2535 4.9826 15 14 4.3332 1.2548 6.7086 16 1 3.6086 2.5478 6.7997 17 1 3.3560 0.1523 6.5223 18 1 5.1023 1.0287 7.9586 19 6 7.4584 3.6405 3.1387 20 6 8.0017 2.2641 3.5306 21 6 4.2752 -0.0071 -0.0064 22 6 3.5805 -1.2009 -0.0015 23 6 2.1976 -1.1975 -0.0005 24 7 1.4557 -2.4782 -0.0005 25 8 1.8684 -3.4210 0.6508 26 8 0.4326 -2.5892 -0.6519 27 1 -0.3633 -0.2862 -0.9870 28 1 -0.3633 -0.7116 0.7414 29 1 -0.3633 0.9979 0.2456 30 1 1.6573 2.1322 -0.0004 31 1 5.5494 0.8557 2.1875 32 1 6.7107 1.8053 1.2295 33 1 6.1471 -0.5660 5.4901 34 1 7.6749 3.9998 2.1327 35 1 7.4214 4.4062 3.9136 36 1 8.3220 2.1249 4.5632 37 1 8.5758 1.7174 2.7826 38 1 5.3552 -0.0102 -0.0113 39 1 4.1178 -2.1377 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829804258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:02 Heat of formation + Delta-G solvation = -72.232088 kcal Electronic energy + Delta-G solvation = -28363.536160 eV Core-core repulsion = 24174.976608 eV Total energy + Delta-G solvation = -4188.559552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.47778 -42.39495 -39.73461 -38.63261 -38.27937 -37.77592 -37.18306 -34.30297 -34.11053 -32.69407 -30.17832 -28.97221 -27.55555 -27.28271 -24.42873 -23.86204 -22.98709 -22.02965 -21.23956 -20.37338 -19.95424 -19.42898 -19.04333 -18.80596 -18.44398 -17.78625 -16.78388 -16.75523 -16.47349 -16.01329 -15.71775 -15.26227 -15.02305 -14.97024 -14.70452 -14.53990 -14.00950 -13.88621 -13.75174 -13.43042 -13.31110 -13.29447 -13.18226 -13.04061 -12.90490 -12.75922 -12.62676 -12.51606 -12.34669 -12.29901 -12.20964 -11.95523 -11.53959 -11.02594 -10.75564 -10.54446 -10.42417 -9.97453 -8.23405 -6.38650 -1.54916 -0.83291 -0.37779 -0.10444 0.16496 1.04276 1.33779 1.39401 1.48568 1.80510 2.35971 2.54975 2.82333 3.04677 3.09547 3.09864 3.24633 3.36731 3.50542 3.67587 3.87039 3.94972 4.10583 4.24361 4.30018 4.45379 4.48250 4.51633 4.56249 4.60737 4.76722 4.78668 4.93265 4.94351 4.99520 5.19682 5.27322 5.40369 5.61951 5.67813 6.18206 6.39509 6.68930 7.34963 8.83431 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.004653 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.498204 B = 6016.026526 C = 7104.199381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.006 4.006 3 C -0.105 4.105 4 C 0.109 3.891 5 O -0.668 6.668 6 S 2.596 3.404 7 O -0.956 6.956 8 O -0.971 6.971 9 C -0.571 4.571 10 C 0.008 3.992 11 C -0.532 4.532 12 H 0.050 0.950 13 C 0.047 3.953 14 N -0.887 5.887 15 Si 0.927 3.073 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.274 1.274 19 C -0.198 4.198 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.032 4.032 23 C -0.049 4.049 24 N 0.028 4.972 25 O -0.184 6.184 26 O -0.130 6.130 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.175 0.825 31 H 0.135 0.865 32 H 0.149 0.851 33 H 0.266 0.734 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.192 0.808 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 -2.841 -13.401 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.008 4.008 3 C -0.125 4.125 4 C 0.067 3.933 5 O -0.626 6.626 6 S 2.698 3.302 7 O -0.955 6.955 8 O -0.969 6.969 9 C -0.702 4.702 10 C 0.006 3.994 11 C -0.570 4.570 12 H 0.069 0.931 13 C -0.156 4.156 14 N -0.523 5.523 15 Si 0.753 3.247 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.200 1.200 19 C -0.235 4.235 20 C -0.168 4.168 21 C -0.149 4.149 22 C -0.050 4.050 23 C -0.132 4.132 24 N 0.550 4.450 25 O -0.394 6.394 26 O -0.355 6.355 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.192 0.808 31 H 0.154 0.846 32 H 0.167 0.833 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.209 0.791 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.269 -1.745 -13.477 14.575 hybrid contribution -0.088 -0.671 1.283 1.450 sum -5.357 -2.416 -12.195 13.537 Atomic orbital electron populations 1.21227 0.86209 1.05733 1.05446 1.19819 0.99453 0.88812 0.92707 1.21473 0.92066 0.99885 0.99125 1.18653 0.91224 0.81872 1.01595 1.85789 1.75574 1.42965 1.58246 1.05371 0.77070 0.75926 0.71870 1.93528 1.83482 1.35490 1.82959 1.93556 1.46088 1.85908 1.71369 1.30149 1.17286 1.14865 1.07933 1.18358 0.91238 0.98684 0.91125 1.20740 1.25084 1.00353 1.10782 0.93148 1.25424 0.95816 0.95661 0.98708 1.70019 1.37614 1.02847 1.41795 0.85971 0.79769 0.78425 0.80550 1.19706 1.20295 1.19953 1.23284 1.06298 0.91882 1.02075 1.22507 0.96343 0.97410 1.00526 1.21694 1.03782 0.88745 1.00667 1.21054 0.90158 1.00946 0.92879 1.21222 0.93202 0.83262 1.15520 1.43589 1.00489 1.02528 0.98351 1.94604 1.72048 1.31351 1.41353 1.94498 1.12589 1.89183 1.39258 0.86557 0.90940 0.87845 0.80769 0.84645 0.83258 0.92513 0.88147 0.89964 0.91463 0.88998 0.79092 0.79727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.51 71.24 0.61 -1.63 16 2 C -0.01 -0.14 5.87 -19.88 -0.12 -0.26 16 3 C -0.11 -2.57 8.67 22.37 0.19 -2.38 16 4 C 0.11 2.88 4.79 22.51 0.11 2.99 16 5 O -0.67 -19.65 10.05 -61.61 -0.62 -20.27 16 6 S 2.60 96.03 4.92 -56.49 -0.28 95.75 16 7 O -0.96 -39.62 17.90 -118.57 -2.12 -41.75 16 8 O -0.97 -40.90 16.24 -118.57 -1.93 -42.83 16 9 C -0.57 -20.67 5.03 71.98 0.36 -20.31 16 10 C 0.01 0.36 1.36 -52.93 -0.07 0.29 16 11 C -0.53 -27.65 8.54 25.60 0.22 -27.43 16 12 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 13 C 0.05 2.46 5.43 84.66 0.46 2.92 16 14 N -0.89 -46.04 12.74 21.45 0.27 -45.77 16 15 Si 0.93 42.36 29.54 68.60 2.03 44.38 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 C -0.20 -7.93 9.77 30.62 0.30 -7.63 16 20 C -0.13 -5.34 9.24 30.62 0.28 -5.06 16 21 C -0.13 -2.80 8.66 22.36 0.19 -2.61 16 22 C -0.03 -0.67 9.66 22.25 0.22 -0.45 16 23 C -0.05 -1.18 6.47 36.39 0.24 -0.94 16 24 N 0.03 0.74 4.20 -46.44 -0.19 0.55 16 25 O -0.18 -5.31 18.96 18.89 0.36 -4.96 16 26 O -0.13 -3.23 16.83 18.89 0.32 -2.91 16 27 H 0.12 1.61 7.71 -2.39 -0.02 1.59 16 28 H 0.07 1.37 7.65 -2.39 -0.02 1.35 16 29 H 0.10 1.40 7.94 -2.38 -0.02 1.38 16 30 H 0.17 3.66 7.99 -2.91 -0.02 3.63 16 31 H 0.14 4.95 7.35 -2.39 -0.02 4.93 16 32 H 0.15 4.06 8.08 -2.39 -0.02 4.04 16 33 H 0.27 13.20 8.32 -92.71 -0.77 12.43 16 34 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 35 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.19 3.00 7.72 -2.91 -0.02 2.98 16 39 H 0.19 2.97 8.02 -2.91 -0.02 2.95 16 Total: -1.00 -66.13 355.86 1.91 -64.23 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.09 Total: 16.07 kcal Atomic # 6 Polarization: -65.49 SS G_CDS: 2.99 Total: -62.50 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.08 Total: -45.22 kcal Atomic # 8 Polarization: -108.72 SS G_CDS: -3.99 Total: -112.71 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 96.03 SS G_CDS: -0.28 Total: 95.75 kcal Total: -66.13 1.91 -64.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829804258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.006 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds