Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38756 * 120.02635 * 2 1 4 4 O 1.35907 * 120.05627 * 359.97438 * 3 2 1 5 5 S 1.52201 * 113.99424 * 90.00193 * 4 3 2 6 6 O 1.42099 * 104.27963 * 318.92802 * 5 4 3 7 7 O 1.42106 * 104.27335 * 191.06979 * 5 4 3 8 8 C 1.81404 * 104.44872 * 75.00275 * 5 4 3 9 9 C 1.52998 * 109.47130 * 185.55567 * 8 5 4 10 10 C 1.50704 * 115.55085 * 295.31747 * 9 8 5 11 11 H 1.08006 * 119.99899 * 118.27106 * 10 9 8 12 12 C 1.37868 * 120.00012 * 298.00182 * 10 9 8 13 13 N 1.31511 * 120.00268 * 172.91268 * 12 10 9 14 14 Si 1.86805 * 119.99892 * 352.90438 * 12 10 9 15 15 H 1.48509 * 109.46876 * 94.14455 * 14 12 10 16 16 H 1.48497 * 109.47064 * 214.13982 * 14 12 10 17 17 H 1.48493 * 109.47115 * 334.14354 * 14 12 10 18 18 C 1.53005 * 117.49890 * 80.98369 * 9 8 5 19 19 C 1.53003 * 117.50067 * 149.64628 * 9 8 5 20 20 C 1.38708 * 119.88810 * 180.28038 * 3 2 1 21 21 C 1.38164 * 119.94333 * 359.46333 * 20 3 2 22 22 C 1.38245 * 120.05689 * 0.53463 * 21 20 3 23 23 C 1.38121 * 120.02937 * 180.02562 * 2 1 3 24 24 N 1.48002 * 119.97366 * 359.97438 * 23 2 1 25 25 O 1.21801 * 120.00094 * 186.39757 * 24 23 2 26 26 O 1.21801 * 119.99684 * 6.39263 * 24 23 2 27 27 H 1.09001 * 109.47533 * 96.63037 * 1 2 3 28 28 H 1.08999 * 109.47339 * 216.63424 * 1 2 3 29 29 H 1.08998 * 109.47468 * 336.63322 * 1 2 3 30 30 H 1.09004 * 109.47085 * 65.55685 * 8 5 4 31 31 H 1.08998 * 109.46831 * 305.55549 * 8 5 4 32 32 H 0.97003 * 120.00398 * 180.02562 * 13 12 10 33 33 H 1.08998 * 117.50087 * 215.00478 * 18 9 8 34 34 H 1.08994 * 117.49548 * 0.03071 * 18 9 8 35 35 H 1.08997 * 117.49518 * 359.97438 * 19 9 8 36 36 H 1.08998 * 117.49443 * 144.97517 * 19 9 8 37 37 H 1.08002 * 120.03123 * 179.74507 * 20 3 2 38 38 H 1.08004 * 119.97213 * 180.28439 * 21 20 3 39 39 H 1.07996 * 119.94656 * 179.72515 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.2013 0.0000 4 8 1.5235 2.3793 -0.0005 5 16 1.2143 2.9161 1.3897 6 8 0.8318 1.7665 2.1322 7 8 0.2983 3.9779 1.1596 8 6 2.8001 3.5621 1.9885 9 6 2.6515 4.0100 3.4439 10 6 1.7137 5.1668 3.6754 11 1 0.8361 5.0355 4.2912 12 6 1.9788 6.3939 3.1057 13 7 1.0940 7.3632 3.1903 14 14 3.5950 6.6799 2.2138 15 1 3.4119 6.4223 0.7627 16 1 4.0300 8.0853 2.4159 17 1 4.6279 5.7596 2.7535 18 6 2.7226 2.9307 4.5260 19 6 3.8851 3.9098 4.3434 20 6 3.5884 1.1980 -0.0059 21 6 4.2752 -0.0008 -0.0005 22 6 3.5811 -1.1964 -0.0005 23 6 2.1982 -1.1958 -0.0005 24 7 1.4582 -2.4776 -0.0005 25 8 2.0616 -3.5291 0.1165 26 8 0.2459 -2.4808 -0.1175 27 1 -0.3634 -0.1187 -1.0208 28 1 -0.3634 -0.8246 0.6132 29 1 -0.3634 0.9433 0.4076 30 1 3.1009 4.4119 1.3757 31 1 3.5580 2.7814 1.9242 32 1 1.2804 8.2265 2.7891 33 1 2.0911 3.0573 5.4053 34 1 2.8757 1.9017 4.2011 35 1 4.8024 3.5243 3.8984 36 1 4.0185 4.6807 5.1023 37 1 4.1311 2.1317 -0.0101 38 1 5.3552 -0.0040 -0.0005 39 1 4.1197 -2.1325 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830087705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -39.173244 kcal Electronic energy + Delta-G solvation = -28869.923470 eV Core-core repulsion = 24682.797457 eV Total energy + Delta-G solvation = -4187.126013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.57258 -41.40273 -38.59925 -37.29857 -36.89742 -36.74578 -35.63901 -33.55519 -32.33882 -31.65059 -29.02238 -28.10662 -26.38229 -25.69152 -23.68840 -22.67590 -21.79125 -21.01421 -19.56640 -19.24021 -18.89468 -17.91490 -17.84995 -17.44622 -17.20514 -16.67693 -16.48740 -15.50887 -15.39616 -14.67624 -14.28474 -14.12642 -13.95483 -13.50556 -13.37734 -13.14777 -12.90029 -12.78850 -12.61407 -12.54106 -12.27024 -12.15779 -11.70718 -11.62425 -11.52726 -11.40623 -11.32034 -10.97786 -10.91061 -10.80440 -10.68772 -10.32091 -10.04922 -9.76261 -9.46278 -9.31716 -8.93076 -8.59281 -6.29800 -4.36420 -0.54931 0.04960 0.68083 0.97717 1.10561 2.28723 2.65769 3.01658 3.18333 3.21342 3.84914 3.91205 3.97910 4.00450 4.20095 4.21995 4.33355 4.44855 4.60322 4.71487 4.90192 4.98642 5.08452 5.22477 5.28843 5.36268 5.42856 5.49922 5.62931 5.67480 5.84487 5.84974 5.95068 6.05379 6.29116 6.31506 6.42729 6.69826 6.93617 7.43949 7.44060 8.25205 8.75243 9.30626 10.81726 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.004147 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.415228 B = 6750.539047 C = 7063.151171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.011 3.989 3 C 0.079 3.921 4 O -0.670 6.670 5 S 2.586 3.414 6 O -0.953 6.953 7 O -0.888 6.888 8 C -0.601 4.601 9 C 0.003 3.997 10 C -0.516 4.516 11 H 0.088 0.912 12 C 0.094 3.906 13 N -0.870 5.870 14 Si 0.849 3.151 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.245 1.245 18 C -0.178 4.178 19 C -0.176 4.176 20 C -0.079 4.079 21 C -0.107 4.107 22 C -0.042 4.042 23 C -0.037 4.037 24 N 0.034 4.966 25 O -0.161 6.161 26 O -0.147 6.147 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.270 0.730 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 -14.933 -8.276 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.008 3.992 3 C 0.036 3.964 4 O -0.628 6.628 5 S 2.684 3.316 6 O -0.951 6.951 7 O -0.887 6.887 8 C -0.730 4.730 9 C 0.001 3.999 10 C -0.553 4.553 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.504 5.504 14 Si 0.676 3.324 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.168 1.168 18 C -0.215 4.215 19 C -0.215 4.215 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.061 4.061 23 C -0.120 4.120 24 N 0.552 4.448 25 O -0.375 6.375 26 O -0.364 6.364 27 H 0.116 0.884 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.142 0.858 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.178 0.822 38 H 0.181 0.819 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.265 -14.158 -8.551 18.489 hybrid contribution 1.331 0.601 -0.411 1.517 sum 9.595 -13.556 -8.962 18.872 Atomic orbital electron populations 1.21406 0.87192 1.06022 1.04615 1.19874 0.99365 0.89411 0.90548 1.17509 0.89723 0.81630 1.07564 1.85937 1.76023 1.40510 1.60287 1.05885 0.78213 0.75096 0.72434 1.93585 1.81483 1.48780 1.71280 1.93685 1.58259 1.55704 1.81005 1.30589 1.21070 1.10765 1.10562 1.18765 0.99713 0.98428 0.83028 1.20348 1.08821 0.91925 1.34175 0.89366 1.24905 0.95933 0.95817 0.94606 1.69864 1.33689 1.03950 1.42897 0.87263 0.86033 0.78898 0.80231 1.20138 1.20760 1.16806 1.22984 1.02827 0.93807 1.01881 1.23099 0.91689 1.02277 1.04420 1.21949 0.91975 1.01520 0.94482 1.21045 1.01479 0.89554 1.00461 1.21220 0.90712 1.01324 0.92870 1.20644 0.92277 0.83327 1.15784 1.43363 1.01186 1.02321 0.97886 1.94536 1.70141 1.19496 1.53308 1.94515 0.95842 1.93621 1.52374 0.88426 0.86983 0.90563 0.85759 0.87167 0.92016 0.88624 0.90117 0.91032 0.88800 0.82156 0.81905 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.04 36.00 0.29 -1.60 16 2 C 0.01 0.15 5.30 -104.47 -0.55 -0.40 16 3 C 0.08 1.08 4.78 -39.22 -0.19 0.89 16 4 O -0.67 -11.01 9.26 -51.77 -0.48 -11.49 16 5 S 2.59 51.44 4.46 -107.50 -0.48 50.96 16 6 O -0.95 -18.94 14.66 -67.04 -0.98 -19.92 16 7 O -0.89 -21.82 17.71 -67.04 -1.19 -23.01 16 8 C -0.60 -11.24 5.11 37.16 0.19 -11.05 16 9 C 0.00 0.07 0.80 -155.66 -0.12 -0.05 16 10 C -0.52 -13.82 8.70 -34.44 -0.30 -14.12 16 11 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 12 C 0.09 2.59 5.46 -17.82 -0.10 2.49 16 13 N -0.87 -25.75 13.96 55.43 0.77 -24.98 16 14 Si 0.85 19.55 24.86 -169.99 -4.23 15.33 16 15 H -0.27 -6.07 6.99 56.52 0.39 -5.68 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.24 -5.07 5.89 56.52 0.33 -4.74 16 18 C -0.18 -3.38 9.96 -26.69 -0.27 -3.65 16 19 C -0.18 -3.33 8.32 -26.69 -0.22 -3.55 16 20 C -0.08 -0.77 8.43 -39.43 -0.33 -1.11 16 21 C -0.11 -0.75 10.04 -39.61 -0.40 -1.15 16 22 C -0.04 -0.35 9.55 -39.56 -0.38 -0.73 16 23 C -0.04 -0.44 6.83 -79.98 -0.55 -0.98 16 24 N 0.03 0.44 4.45 33.95 0.15 0.60 16 25 O -0.16 -2.07 18.46 -29.46 -0.54 -2.61 16 26 O -0.15 -2.03 15.35 -29.46 -0.45 -2.48 16 27 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.11 1.52 5.84 -51.93 -0.30 1.22 16 29 H 0.08 1.17 5.65 -51.93 -0.29 0.88 16 30 H 0.12 2.35 4.71 -51.92 -0.24 2.11 16 31 H 0.11 1.52 6.19 -51.93 -0.32 1.20 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.16 1.18 7.41 -52.49 -0.39 0.79 16 38 H 0.16 0.50 8.06 -52.48 -0.42 0.07 16 39 H 0.16 0.95 7.62 -52.49 -0.40 0.55 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -33.40 337.02 -9.39 -42.80 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.12 Total: 4.74 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: -2.92 Total: -35.02 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.92 Total: -24.38 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -3.65 Total: -59.51 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.23 Total: 15.33 kcal Atomic # 16 Polarization: 51.44 SS G_CDS: -0.48 Total: 50.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.40 -9.39 -42.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830087705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.624 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds