Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38756 * 120.02635 * 2 1 4 4 O 1.35907 * 120.05627 * 359.97438 * 3 2 1 5 5 S 1.52201 * 113.99424 * 90.00193 * 4 3 2 6 6 O 1.42099 * 104.27963 * 318.92802 * 5 4 3 7 7 O 1.42106 * 104.27335 * 191.06979 * 5 4 3 8 8 C 1.81404 * 104.44872 * 75.00275 * 5 4 3 9 9 C 1.52998 * 109.47130 * 185.55567 * 8 5 4 10 10 C 1.50704 * 115.55085 * 295.31747 * 9 8 5 11 11 H 1.08006 * 119.99899 * 118.27106 * 10 9 8 12 12 C 1.37868 * 120.00012 * 298.00182 * 10 9 8 13 13 N 1.31511 * 120.00268 * 172.91268 * 12 10 9 14 14 Si 1.86805 * 119.99892 * 352.90438 * 12 10 9 15 15 H 1.48509 * 109.46876 * 94.14455 * 14 12 10 16 16 H 1.48497 * 109.47064 * 214.13982 * 14 12 10 17 17 H 1.48493 * 109.47115 * 334.14354 * 14 12 10 18 18 C 1.53005 * 117.49890 * 80.98369 * 9 8 5 19 19 C 1.53003 * 117.50067 * 149.64628 * 9 8 5 20 20 C 1.38708 * 119.88810 * 180.28038 * 3 2 1 21 21 C 1.38164 * 119.94333 * 359.46333 * 20 3 2 22 22 C 1.38245 * 120.05689 * 0.53463 * 21 20 3 23 23 C 1.38121 * 120.02937 * 180.02562 * 2 1 3 24 24 N 1.48002 * 119.97366 * 359.97438 * 23 2 1 25 25 O 1.21801 * 120.00094 * 186.39757 * 24 23 2 26 26 O 1.21801 * 119.99684 * 6.39263 * 24 23 2 27 27 H 1.09001 * 109.47533 * 96.63037 * 1 2 3 28 28 H 1.08999 * 109.47339 * 216.63424 * 1 2 3 29 29 H 1.08998 * 109.47468 * 336.63322 * 1 2 3 30 30 H 1.09004 * 109.47085 * 65.55685 * 8 5 4 31 31 H 1.08998 * 109.46831 * 305.55549 * 8 5 4 32 32 H 0.97003 * 120.00398 * 180.02562 * 13 12 10 33 33 H 1.08998 * 117.50087 * 215.00478 * 18 9 8 34 34 H 1.08994 * 117.49548 * 0.03071 * 18 9 8 35 35 H 1.08997 * 117.49518 * 359.97438 * 19 9 8 36 36 H 1.08998 * 117.49443 * 144.97517 * 19 9 8 37 37 H 1.08002 * 120.03123 * 179.74507 * 20 3 2 38 38 H 1.08004 * 119.97213 * 180.28439 * 21 20 3 39 39 H 1.07996 * 119.94656 * 179.72515 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.2013 0.0000 4 8 1.5235 2.3793 -0.0005 5 16 1.2143 2.9161 1.3897 6 8 0.8318 1.7665 2.1322 7 8 0.2983 3.9779 1.1596 8 6 2.8001 3.5621 1.9885 9 6 2.6515 4.0100 3.4439 10 6 1.7137 5.1668 3.6754 11 1 0.8361 5.0355 4.2912 12 6 1.9788 6.3939 3.1057 13 7 1.0940 7.3632 3.1903 14 14 3.5950 6.6799 2.2138 15 1 3.4119 6.4223 0.7627 16 1 4.0300 8.0853 2.4159 17 1 4.6279 5.7596 2.7535 18 6 2.7226 2.9307 4.5260 19 6 3.8851 3.9098 4.3434 20 6 3.5884 1.1980 -0.0059 21 6 4.2752 -0.0008 -0.0005 22 6 3.5811 -1.1964 -0.0005 23 6 2.1982 -1.1958 -0.0005 24 7 1.4582 -2.4776 -0.0005 25 8 2.0616 -3.5291 0.1165 26 8 0.2459 -2.4808 -0.1175 27 1 -0.3634 -0.1187 -1.0208 28 1 -0.3634 -0.8246 0.6132 29 1 -0.3634 0.9433 0.4076 30 1 3.1009 4.4119 1.3757 31 1 3.5580 2.7814 1.9242 32 1 1.2804 8.2265 2.7891 33 1 2.0911 3.0573 5.4053 34 1 2.8757 1.9017 4.2011 35 1 4.8024 3.5243 3.8984 36 1 4.0185 4.6807 5.1023 37 1 4.1311 2.1317 -0.0101 38 1 5.3552 -0.0040 -0.0005 39 1 4.1197 -2.1325 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830087705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -62.790960 kcal Electronic energy + Delta-G solvation = -28870.947611 eV Core-core repulsion = 24682.797457 eV Total energy + Delta-G solvation = -4188.150154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.50782 -42.45453 -39.53982 -38.88604 -38.33490 -37.85610 -37.23363 -34.40524 -34.34946 -32.51246 -30.47052 -29.05334 -27.71273 -27.23681 -24.69716 -23.53733 -23.26991 -22.15750 -21.14728 -20.36613 -19.91731 -19.28482 -18.94021 -18.74859 -18.35755 -18.04631 -17.30263 -17.07187 -16.82101 -16.16100 -15.58917 -15.14739 -15.01290 -14.87019 -14.64626 -14.62046 -14.22454 -14.08266 -13.97408 -13.48473 -13.44588 -13.25241 -13.20092 -13.11699 -13.03305 -12.68566 -12.59128 -12.48927 -12.31037 -12.19289 -11.90046 -11.80719 -11.63586 -11.03810 -10.84704 -10.75211 -10.40413 -10.21566 -8.35233 -6.47314 -1.42273 -1.16453 -0.30938 0.09008 0.20548 1.03790 1.23672 1.34630 1.47799 1.91690 2.31662 2.52272 2.78496 2.89003 3.04939 3.13725 3.19872 3.27004 3.52406 3.62431 3.72986 3.79839 3.93774 4.17892 4.20141 4.34549 4.36666 4.47629 4.52002 4.60429 4.70913 4.77379 4.81979 4.88554 4.91146 5.09832 5.19551 5.35683 5.48068 5.56429 6.18162 6.44465 6.62383 7.23794 8.81435 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.004147 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.415228 B = 6750.539047 C = 7063.151171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.012 4.012 3 C 0.034 3.966 4 O -0.667 6.667 5 S 2.586 3.414 6 O -0.967 6.967 7 O -0.962 6.962 8 C -0.590 4.590 9 C -0.036 4.036 10 C -0.520 4.520 11 H 0.028 0.972 12 C 0.026 3.974 13 N -0.937 5.937 14 Si 0.905 3.095 15 H -0.260 1.260 16 H -0.288 1.288 17 H -0.191 1.191 18 C -0.174 4.174 19 C -0.150 4.150 20 C -0.071 4.071 21 C -0.078 4.078 22 C -0.023 4.023 23 C -0.052 4.052 24 N 0.033 4.967 25 O -0.141 6.141 26 O -0.194 6.194 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.049 0.951 30 H 0.128 0.872 31 H 0.173 0.827 32 H 0.269 0.731 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.195 0.805 38 H 0.223 0.777 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.471 -17.557 -9.429 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 C -0.009 4.009 4 O -0.626 6.626 5 S 2.688 3.312 6 O -0.966 6.966 7 O -0.961 6.961 8 C -0.721 4.721 9 C -0.038 4.038 10 C -0.557 4.557 11 H 0.046 0.954 12 C -0.174 4.174 13 N -0.574 5.574 14 Si 0.726 3.274 15 H -0.185 1.185 16 H -0.215 1.215 17 H -0.112 1.112 18 C -0.211 4.211 19 C -0.189 4.189 20 C -0.091 4.091 21 C -0.096 4.096 22 C -0.043 4.043 23 C -0.136 4.136 24 N 0.548 4.452 25 O -0.363 6.363 26 O -0.399 6.399 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.191 0.809 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.212 0.788 38 H 0.240 0.760 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 14.862 -16.787 -9.699 24.429 hybrid contribution -0.704 1.198 -0.012 1.389 sum 14.159 -15.589 -9.711 23.190 Atomic orbital electron populations 1.21374 0.89052 1.04231 1.05093 1.19883 0.98730 0.90731 0.92200 1.18077 0.91506 0.80168 1.11141 1.85880 1.76923 1.41962 1.57814 1.05648 0.78798 0.74112 0.72677 1.93544 1.82266 1.48664 1.72084 1.93600 1.61707 1.58117 1.82642 1.30386 1.21138 1.12683 1.07855 1.18665 1.01478 0.98125 0.85580 1.20498 1.08139 0.94406 1.32700 0.95367 1.25983 1.00367 0.95260 0.95831 1.70064 1.36859 1.04798 1.45686 0.86387 0.81736 0.79535 0.79700 1.18502 1.21478 1.11205 1.23088 1.02811 0.95081 1.00141 1.23214 0.92243 1.01249 1.02177 1.22509 0.89837 1.04329 0.92396 1.21766 1.03818 0.87282 0.96699 1.21853 0.88847 1.03764 0.89804 1.20865 0.93556 0.81751 1.17419 1.43625 1.01172 1.02904 0.97478 1.94491 1.69855 1.20147 1.51765 1.94535 0.96606 1.93943 1.54856 0.87424 0.87538 0.93161 0.85388 0.80888 0.92252 0.90416 0.86853 0.85975 0.89793 0.78831 0.76029 0.78537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.04 71.23 0.57 -3.63 16 2 C -0.01 -0.31 5.30 -19.77 -0.10 -0.41 16 3 C 0.03 0.83 4.78 22.51 0.11 0.94 16 4 O -0.67 -21.60 9.26 -61.60 -0.57 -22.17 16 5 S 2.59 103.85 4.46 -56.49 -0.25 103.60 16 6 O -0.97 -39.27 14.66 -118.57 -1.74 -41.01 16 7 O -0.96 -50.75 17.71 -118.57 -2.10 -52.85 16 8 C -0.59 -19.83 5.11 71.98 0.37 -19.47 16 9 C -0.04 -1.48 0.80 -52.92 -0.04 -1.53 16 10 C -0.52 -29.00 8.70 25.60 0.22 -28.78 16 11 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 12 C 0.03 1.45 5.46 84.65 0.46 1.91 16 13 N -0.94 -59.14 13.96 21.44 0.30 -58.84 16 14 Si 0.91 38.80 24.86 68.60 1.71 40.50 16 15 H -0.26 -10.41 6.99 99.48 0.70 -9.72 16 16 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.19 -6.50 5.89 99.48 0.59 -5.91 16 18 C -0.17 -6.13 9.96 30.62 0.30 -5.82 16 19 C -0.15 -4.89 8.32 30.62 0.25 -4.64 16 20 C -0.07 -0.92 8.43 22.36 0.19 -0.73 16 21 C -0.08 -0.45 10.04 22.25 0.22 -0.23 16 22 C -0.02 -0.25 9.55 22.28 0.21 -0.03 16 23 C -0.05 -1.10 6.83 36.36 0.25 -0.85 16 24 N 0.03 0.81 4.45 -46.51 -0.21 0.61 16 25 O -0.14 -3.26 18.46 18.88 0.35 -2.91 16 26 O -0.19 -5.52 15.35 18.88 0.29 -5.23 16 27 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.11 3.18 5.84 -2.39 -0.01 3.16 16 29 H 0.05 1.71 5.65 -2.39 -0.01 1.70 16 30 H 0.13 4.28 4.71 -2.39 -0.01 4.27 16 31 H 0.17 3.46 6.19 -2.39 -0.01 3.45 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.19 1.21 7.41 -2.91 -0.02 1.19 16 38 H 0.22 -1.16 8.06 -2.91 -0.02 -1.18 16 39 H 0.20 0.82 7.62 -2.91 -0.02 0.79 16 Total: -1.00 -86.03 337.02 1.77 -84.26 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.98 Total: 17.31 kcal Atomic # 6 Polarization: -66.28 SS G_CDS: 3.02 Total: -63.26 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.09 Total: -58.23 kcal Atomic # 8 Polarization: -120.42 SS G_CDS: -3.77 Total: -124.19 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.71 Total: 40.50 kcal Atomic # 16 Polarization: 103.85 SS G_CDS: -0.25 Total: 103.60 kcal Total: -86.03 1.77 -84.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830087705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.469 kcal (2) G-P(sol) polarization free energy of solvation -86.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds