Wall clock time and date at job start Sat Apr 11 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38291 * 119.94586 * 2 1 4 4 C 1.38125 * 120.05620 * 180.02562 * 3 2 1 5 5 C 1.38759 * 119.94293 * 359.97438 * 4 3 2 6 6 O 1.35895 * 120.05292 * 179.97438 * 5 4 3 7 7 S 1.52201 * 114.00285 * 90.00028 * 6 5 4 8 8 O 1.42098 * 104.27997 * 196.23126 * 7 6 5 9 9 O 1.42105 * 104.27590 * 324.09013 * 7 6 5 10 10 C 1.81395 * 104.45005 * 80.15957 * 7 6 5 11 11 C 1.52999 * 109.47607 * 177.97384 * 10 7 6 12 12 C 1.50706 * 115.54647 * 53.91049 * 11 10 7 13 13 H 1.07997 * 120.00016 * 264.38357 * 12 11 10 14 14 C 1.37871 * 119.99852 * 84.38332 * 12 11 10 15 15 N 1.31518 * 120.00038 * 176.35448 * 14 12 11 16 16 Si 1.86802 * 120.00207 * 356.35665 * 14 12 11 17 17 H 1.48497 * 109.47039 * 89.84558 * 16 14 12 18 18 H 1.48504 * 109.47114 * 209.84372 * 16 14 12 19 19 H 1.48496 * 109.46982 * 329.84212 * 16 14 12 20 20 C 1.52992 * 117.49794 * 268.24608 * 11 10 7 21 21 C 1.52997 * 117.50302 * 199.58180 * 11 10 7 22 22 C 1.38715 * 119.88737 * 0.25150 * 5 4 3 23 23 C 1.38163 * 119.94330 * 359.51395 * 22 5 4 24 24 N 1.47999 * 119.97017 * 180.22663 * 23 22 5 25 25 O 1.21805 * 119.99901 * 6.35645 * 24 23 22 26 26 O 1.21795 * 120.00285 * 186.34959 * 24 23 22 27 27 H 1.08998 * 109.46787 * 98.77323 * 1 2 3 28 28 H 1.08994 * 109.47214 * 218.77467 * 1 2 3 29 29 H 1.08995 * 109.46989 * 338.77602 * 1 2 3 30 30 H 1.07994 * 119.96579 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.02904 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47387 * 297.97435 * 10 7 6 33 33 H 1.09006 * 109.47325 * 57.97287 * 10 7 6 34 34 H 0.97003 * 120.00248 * 180.02562 * 15 14 12 35 35 H 1.09004 * 117.50196 * 359.97438 * 20 11 10 36 36 H 1.09005 * 117.49877 * 145.01914 * 20 11 10 37 37 H 1.08999 * 117.49852 * 214.97635 * 21 11 10 38 38 H 1.08996 * 117.49488 * 359.97438 * 21 11 10 39 39 H 1.08000 * 120.01904 * 179.74624 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5786 1.2009 -0.0005 5 6 4.2735 -0.0001 -0.0005 6 8 5.6324 -0.0001 -0.0016 7 16 6.2526 0.0005 1.3883 8 8 7.6029 0.3853 1.1695 9 8 5.3768 0.8086 2.1625 10 6 6.1629 -1.7300 1.9248 11 6 6.8086 -1.8704 3.3048 12 6 6.2732 -0.9481 4.3696 13 1 6.7760 -0.0155 4.5790 14 6 5.1414 -1.2949 5.0765 15 7 4.7151 -0.5253 6.0541 16 14 4.2135 -2.8579 4.6459 17 1 4.7575 -3.9905 5.4374 18 1 2.7730 -2.6810 4.9604 19 1 4.3724 -3.1447 3.1976 20 6 8.2972 -2.2196 3.3559 21 6 7.2509 -3.2692 3.7389 22 6 3.5787 -1.2007 -0.0053 23 6 2.1970 -1.1979 0.0002 24 7 1.4552 -2.4785 0.0002 25 8 2.0575 -3.5313 0.1122 26 8 0.2424 -2.4798 -0.1117 27 1 -0.3633 -0.1567 -1.0156 28 1 -0.3633 -0.8011 0.6435 29 1 -0.3633 0.9579 0.3720 30 1 1.6559 2.1327 0.0004 31 1 4.1172 2.1370 -0.0010 32 1 5.1194 -2.0401 1.9787 33 1 6.6926 -2.3599 1.2101 34 1 3.9190 -0.7695 6.5518 35 1 8.8166 -2.3497 2.4065 36 1 8.8893 -1.7827 4.1601 37 1 7.1550 -3.5223 4.7947 38 1 7.0815 -4.0895 3.0415 39 1 4.1174 -2.1367 -0.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830950529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:16 Heat of formation + Delta-G solvation = -42.504692 kcal Electronic energy + Delta-G solvation = -28951.066860 eV Core-core repulsion = 24763.796385 eV Total energy + Delta-G solvation = -4187.270475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.46660 -41.20371 -38.72640 -37.23308 -36.78599 -36.69142 -35.55071 -32.76540 -32.37640 -32.26647 -28.87884 -27.95596 -26.25190 -25.64202 -23.22711 -22.99443 -21.78051 -21.09483 -19.63128 -18.91713 -18.83627 -17.78717 -17.59670 -17.48025 -17.13817 -16.41087 -16.23865 -15.47764 -15.26223 -14.71258 -14.36197 -14.22757 -13.97227 -13.67153 -13.14729 -12.97921 -12.79861 -12.73947 -12.69465 -12.54087 -12.10393 -12.03047 -11.65882 -11.53600 -11.52448 -11.32130 -11.23855 -10.97561 -10.85760 -10.75930 -10.51758 -10.19338 -9.97237 -9.84279 -9.34038 -9.26907 -8.75392 -8.61377 -6.26760 -4.36488 -0.39350 0.07608 0.79514 1.10412 1.19416 2.43419 2.80214 3.14793 3.24394 3.27530 3.92996 3.98530 4.09961 4.15629 4.24610 4.28163 4.39859 4.60062 4.69265 4.86565 4.92978 5.00201 5.16362 5.25447 5.29284 5.43030 5.48758 5.62568 5.63832 5.76105 5.82161 5.94116 6.05253 6.06081 6.31571 6.35525 6.51174 6.74489 6.98074 7.47949 7.52019 8.25462 8.77171 9.34498 10.84308 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011436 B = 0.005795 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.807142 B = 4830.439364 C = 5778.611615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.006 4.006 3 C -0.102 4.102 4 C -0.036 4.036 5 C 0.087 3.913 6 O -0.678 6.678 7 S 2.590 3.410 8 O -0.931 6.931 9 O -0.920 6.920 10 C -0.602 4.602 11 C 0.001 3.999 12 C -0.519 4.519 13 H 0.089 0.911 14 C 0.098 3.902 15 N -0.875 5.875 16 Si 0.864 3.136 17 H -0.270 1.270 18 H -0.289 1.289 19 H -0.256 1.256 20 C -0.174 4.174 21 C -0.182 4.182 22 C -0.070 4.070 23 C -0.034 4.034 24 N 0.034 4.966 25 O -0.160 6.160 26 O -0.149 6.149 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.268 0.732 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 1.217 -14.562 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.008 4.008 3 C -0.121 4.121 4 C -0.056 4.056 5 C 0.045 3.955 6 O -0.636 6.636 7 S 2.688 3.312 8 O -0.929 6.929 9 O -0.919 6.919 10 C -0.732 4.732 11 C -0.001 4.001 12 C -0.555 4.555 13 H 0.107 0.893 14 C -0.109 4.109 15 N -0.509 5.509 16 Si 0.691 3.309 17 H -0.195 1.195 18 H -0.215 1.215 19 H -0.181 1.181 20 C -0.211 4.211 21 C -0.220 4.220 22 C -0.091 4.091 23 C -0.117 4.117 24 N 0.552 4.448 25 O -0.375 6.375 26 O -0.365 6.365 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.207 2.588 -14.603 16.077 hybrid contribution -0.461 -2.013 0.080 2.067 sum -6.668 0.575 -14.523 15.991 Atomic orbital electron populations 1.21335 0.87727 1.05008 1.04784 1.20079 0.98672 0.90264 0.91814 1.21067 0.92847 0.97803 1.00348 1.21787 0.94905 0.98134 0.90795 1.17457 0.78205 0.93228 1.06653 1.85861 1.24417 1.92504 1.60791 1.05671 0.74900 0.78744 0.71844 1.93567 1.35069 1.81566 1.82685 1.93657 1.64824 1.65223 1.68190 1.30597 1.10572 1.23344 1.08685 1.18773 0.93831 0.97372 0.90159 1.20333 1.11956 1.05687 1.17560 0.89347 1.24889 0.96143 0.96143 0.93687 1.69873 1.23647 1.37567 1.19837 0.87113 0.79092 0.84312 0.80345 1.19538 1.21509 1.18060 1.22999 0.92137 1.03908 1.02033 1.23005 1.05304 0.92253 1.01459 1.21061 0.92395 0.99983 0.95655 1.20502 0.91319 0.84078 1.15841 1.43370 1.01101 1.02471 0.97866 1.94591 1.70252 1.19359 1.53251 1.94462 0.95884 1.93644 1.52514 0.88915 0.88149 0.90182 0.81904 0.82176 0.85497 0.86578 0.92172 0.90129 0.88485 0.88738 0.90514 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.60 36.01 0.31 -0.82 16 2 C -0.01 -0.07 5.88 -104.60 -0.62 -0.68 16 3 C -0.10 -1.00 9.66 -39.60 -0.38 -1.38 16 4 C -0.04 -0.44 9.08 -39.43 -0.36 -0.80 16 5 C 0.09 1.29 4.72 -39.21 -0.18 1.11 16 6 O -0.68 -10.92 10.04 -51.73 -0.52 -11.44 16 7 S 2.59 51.27 4.79 -107.50 -0.52 50.75 16 8 O -0.93 -20.21 18.09 -67.04 -1.21 -21.42 16 9 O -0.92 -20.53 15.20 -67.04 -1.02 -21.55 16 10 C -0.60 -11.68 5.37 37.16 0.20 -11.48 16 11 C 0.00 0.03 0.94 -155.66 -0.15 -0.12 16 12 C -0.52 -14.02 7.91 -34.44 -0.27 -14.29 16 13 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 14 C 0.10 2.72 5.47 -17.82 -0.10 2.62 16 15 N -0.87 -25.94 13.96 55.43 0.77 -25.17 16 16 Si 0.86 20.95 25.32 -169.99 -4.30 16.65 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.26 -5.69 5.19 56.52 0.29 -5.40 16 20 C -0.17 -3.44 9.92 -26.70 -0.26 -3.71 16 21 C -0.18 -3.67 7.84 -26.69 -0.21 -3.88 16 22 C -0.07 -1.00 8.34 -39.43 -0.33 -1.33 16 23 C -0.03 -0.47 6.83 -79.98 -0.55 -1.01 16 24 N 0.03 0.50 4.45 33.95 0.15 0.66 16 25 O -0.16 -2.63 18.46 -29.46 -0.54 -3.17 16 26 O -0.15 -2.09 15.39 -29.46 -0.45 -2.55 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.10 1.00 5.99 -51.93 -0.31 0.69 16 29 H 0.08 0.49 8.01 -51.93 -0.42 0.07 16 30 H 0.16 0.93 8.04 -52.49 -0.42 0.51 16 31 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.13 2.43 4.52 -51.92 -0.23 2.19 16 33 H 0.12 1.79 8.09 -51.92 -0.42 1.37 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 37 H 0.09 1.99 7.63 -51.93 -0.40 1.59 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.17 2.18 7.12 -52.49 -0.37 1.81 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -33.82 342.05 -9.74 -43.56 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.35 Total: 4.30 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: -2.90 Total: -35.78 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.92 Total: -24.51 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -3.75 Total: -60.12 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.30 Total: 16.65 kcal Atomic # 16 Polarization: 51.27 SS G_CDS: -0.52 Total: 50.75 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.82 -9.74 -43.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830950529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.057 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds