Wall clock time and date at job start Sat Apr 11 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38291 * 119.94586 * 2 1 4 4 C 1.38125 * 120.05620 * 180.02562 * 3 2 1 5 5 C 1.38759 * 119.94293 * 359.97438 * 4 3 2 6 6 O 1.35895 * 120.05292 * 179.97438 * 5 4 3 7 7 S 1.52201 * 114.00285 * 90.00028 * 6 5 4 8 8 O 1.42098 * 104.27997 * 196.23126 * 7 6 5 9 9 O 1.42105 * 104.27590 * 324.09013 * 7 6 5 10 10 C 1.81395 * 104.45005 * 80.15957 * 7 6 5 11 11 C 1.52999 * 109.47607 * 177.97384 * 10 7 6 12 12 C 1.50706 * 115.54647 * 53.91049 * 11 10 7 13 13 H 1.07997 * 120.00016 * 264.38357 * 12 11 10 14 14 C 1.37871 * 119.99852 * 84.38332 * 12 11 10 15 15 N 1.31518 * 120.00038 * 176.35448 * 14 12 11 16 16 Si 1.86802 * 120.00207 * 356.35665 * 14 12 11 17 17 H 1.48497 * 109.47039 * 89.84558 * 16 14 12 18 18 H 1.48504 * 109.47114 * 209.84372 * 16 14 12 19 19 H 1.48496 * 109.46982 * 329.84212 * 16 14 12 20 20 C 1.52992 * 117.49794 * 268.24608 * 11 10 7 21 21 C 1.52997 * 117.50302 * 199.58180 * 11 10 7 22 22 C 1.38715 * 119.88737 * 0.25150 * 5 4 3 23 23 C 1.38163 * 119.94330 * 359.51395 * 22 5 4 24 24 N 1.47999 * 119.97017 * 180.22663 * 23 22 5 25 25 O 1.21805 * 119.99901 * 6.35645 * 24 23 22 26 26 O 1.21795 * 120.00285 * 186.34959 * 24 23 22 27 27 H 1.08998 * 109.46787 * 98.77323 * 1 2 3 28 28 H 1.08994 * 109.47214 * 218.77467 * 1 2 3 29 29 H 1.08995 * 109.46989 * 338.77602 * 1 2 3 30 30 H 1.07994 * 119.96579 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.02904 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47387 * 297.97435 * 10 7 6 33 33 H 1.09006 * 109.47325 * 57.97287 * 10 7 6 34 34 H 0.97003 * 120.00248 * 180.02562 * 15 14 12 35 35 H 1.09004 * 117.50196 * 359.97438 * 20 11 10 36 36 H 1.09005 * 117.49877 * 145.01914 * 20 11 10 37 37 H 1.08999 * 117.49852 * 214.97635 * 21 11 10 38 38 H 1.08996 * 117.49488 * 359.97438 * 21 11 10 39 39 H 1.08000 * 120.01904 * 179.74624 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5786 1.2009 -0.0005 5 6 4.2735 -0.0001 -0.0005 6 8 5.6324 -0.0001 -0.0016 7 16 6.2526 0.0005 1.3883 8 8 7.6029 0.3853 1.1695 9 8 5.3768 0.8086 2.1625 10 6 6.1629 -1.7300 1.9248 11 6 6.8086 -1.8704 3.3048 12 6 6.2732 -0.9481 4.3696 13 1 6.7760 -0.0155 4.5790 14 6 5.1414 -1.2949 5.0765 15 7 4.7151 -0.5253 6.0541 16 14 4.2135 -2.8579 4.6459 17 1 4.7575 -3.9905 5.4374 18 1 2.7730 -2.6810 4.9604 19 1 4.3724 -3.1447 3.1976 20 6 8.2972 -2.2196 3.3559 21 6 7.2509 -3.2692 3.7389 22 6 3.5787 -1.2007 -0.0053 23 6 2.1970 -1.1979 0.0002 24 7 1.4552 -2.4785 0.0002 25 8 2.0575 -3.5313 0.1122 26 8 0.2424 -2.4798 -0.1117 27 1 -0.3633 -0.1567 -1.0156 28 1 -0.3633 -0.8011 0.6435 29 1 -0.3633 0.9579 0.3720 30 1 1.6559 2.1327 0.0004 31 1 4.1172 2.1370 -0.0010 32 1 5.1194 -2.0401 1.9787 33 1 6.6926 -2.3599 1.2101 34 1 3.9190 -0.7695 6.5518 35 1 8.8166 -2.3497 2.4065 36 1 8.8893 -1.7827 4.1601 37 1 7.1550 -3.5223 4.7947 38 1 7.0815 -4.0895 3.0415 39 1 4.1174 -2.1367 -0.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830950529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:16 Heat of formation + Delta-G solvation = -65.010846 kcal Electronic energy + Delta-G solvation = -28952.042800 eV Core-core repulsion = 24763.796385 eV Total energy + Delta-G solvation = -4188.246415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.55236 -42.36482 -39.76822 -38.91147 -38.31104 -37.89349 -37.16827 -34.35771 -33.67642 -33.32994 -30.41594 -28.91066 -27.74020 -27.16884 -24.20170 -24.06608 -23.36939 -22.30642 -21.27590 -20.28482 -19.98609 -19.10815 -18.97540 -18.78670 -18.46693 -17.92010 -17.22071 -17.02182 -16.85866 -16.16228 -15.63949 -15.28395 -15.06219 -14.93948 -14.80286 -14.63011 -14.31968 -14.07304 -13.72804 -13.45974 -13.36144 -13.26667 -13.15189 -13.15007 -13.01060 -12.71013 -12.62386 -12.47540 -12.36540 -12.14574 -11.90400 -11.82171 -11.78590 -11.05291 -10.91332 -10.77987 -10.43467 -10.21386 -8.39067 -6.51640 -1.42290 -1.21218 -0.35084 0.06061 0.12996 1.09515 1.24217 1.28483 1.35341 1.86529 2.24281 2.52873 2.76509 2.93660 3.04105 3.07264 3.17966 3.20510 3.48292 3.54764 3.68381 3.84471 4.00629 4.15457 4.25785 4.32225 4.42571 4.48363 4.50022 4.67371 4.72855 4.82324 4.88799 4.91223 4.94700 5.05966 5.12664 5.38802 5.41520 5.54547 6.13591 6.40154 6.60481 7.22133 8.76514 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011436 B = 0.005795 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.807142 B = 4830.439364 C = 5778.611615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.002 3.998 3 C -0.088 4.088 4 C -0.044 4.044 5 C 0.050 3.950 6 O -0.664 6.664 7 S 2.600 3.400 8 O -0.960 6.960 9 O -0.958 6.958 10 C -0.601 4.601 11 C -0.035 4.035 12 C -0.514 4.514 13 H 0.040 0.960 14 C 0.045 3.955 15 N -0.929 5.929 16 Si 0.909 3.091 17 H -0.257 1.257 18 H -0.297 1.297 19 H -0.224 1.224 20 C -0.165 4.165 21 C -0.170 4.170 22 C -0.080 4.080 23 C -0.055 4.055 24 N 0.033 4.967 25 O -0.212 6.212 26 O -0.120 6.120 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.212 0.788 31 H 0.178 0.822 32 H 0.130 0.870 33 H 0.162 0.838 34 H 0.269 0.731 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.083 0.495 -16.827 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.000 4.000 3 C -0.106 4.106 4 C -0.064 4.064 5 C 0.008 3.992 6 O -0.622 6.622 7 S 2.700 3.300 8 O -0.958 6.958 9 O -0.956 6.956 10 C -0.731 4.731 11 C -0.037 4.037 12 C -0.551 4.551 13 H 0.058 0.942 14 C -0.156 4.156 15 N -0.566 5.566 16 Si 0.733 3.267 17 H -0.182 1.182 18 H -0.224 1.224 19 H -0.147 1.147 20 C -0.202 4.202 21 C -0.208 4.208 22 C -0.101 4.101 23 C -0.139 4.139 24 N 0.549 4.451 25 O -0.413 6.413 26 O -0.345 6.345 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.130 0.870 30 H 0.229 0.771 31 H 0.195 0.805 32 H 0.148 0.852 33 H 0.180 0.820 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.461 1.792 -16.873 18.535 hybrid contribution -0.148 -1.610 0.725 1.772 sum -7.609 0.182 -16.148 17.852 Atomic orbital electron populations 1.21486 0.85498 1.06312 1.05717 1.20610 1.00293 0.89604 0.89530 1.21640 0.91855 0.99153 0.97902 1.22244 0.96283 0.98013 0.89816 1.17858 0.77389 0.94541 1.09432 1.85799 1.25691 1.92462 1.58278 1.05206 0.74060 0.78839 0.71880 1.93521 1.36583 1.82264 1.83418 1.93600 1.65531 1.66672 1.69816 1.30485 1.11114 1.23729 1.07760 1.18721 0.96105 0.98451 0.90439 1.20413 1.11352 1.04788 1.18570 0.94156 1.25656 0.97142 0.99236 0.93521 1.70014 1.24694 1.40060 1.21824 0.86362 0.77211 0.80935 0.82213 1.18171 1.22386 1.14714 1.23121 0.90902 1.02851 1.03361 1.23087 1.04044 0.91985 1.01693 1.21156 0.92959 1.00154 0.95868 1.20739 0.91405 0.84207 1.17570 1.43543 1.01185 1.02787 0.97628 1.94593 1.70443 1.20166 1.56143 1.94428 0.95934 1.93724 1.50463 0.86942 0.89583 0.87023 0.77115 0.80495 0.85204 0.82014 0.92222 0.86802 0.89486 0.90005 0.86888 0.81068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.60 71.24 0.61 -1.13 16 2 C 0.00 0.04 5.88 -19.85 -0.12 -0.08 16 3 C -0.09 -1.39 9.66 22.26 0.22 -1.18 16 4 C -0.04 -0.97 9.08 22.37 0.20 -0.77 16 5 C 0.05 1.43 4.72 22.51 0.11 1.54 16 6 O -0.66 -20.84 10.04 -61.46 -0.62 -21.46 16 7 S 2.60 102.19 4.79 -56.49 -0.27 101.92 16 8 O -0.96 -41.67 18.09 -118.57 -2.15 -43.82 16 9 O -0.96 -43.56 15.20 -118.57 -1.80 -45.37 16 10 C -0.60 -22.10 5.37 71.98 0.39 -21.71 16 11 C -0.03 -1.52 0.94 -52.93 -0.05 -1.57 16 12 C -0.51 -28.52 7.91 25.60 0.20 -28.32 16 13 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 14 C 0.05 2.59 5.47 84.65 0.46 3.05 16 15 N -0.93 -57.30 13.96 21.45 0.30 -57.00 16 16 Si 0.91 42.62 25.32 68.60 1.74 44.36 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 19 H -0.22 -9.25 5.19 99.48 0.52 -8.73 16 20 C -0.17 -6.23 9.92 30.62 0.30 -5.93 16 21 C -0.17 -6.38 7.84 30.62 0.24 -6.14 16 22 C -0.08 -2.21 8.34 22.37 0.19 -2.02 16 23 C -0.06 -1.44 6.83 36.36 0.25 -1.19 16 24 N 0.03 0.94 4.45 -46.51 -0.21 0.74 16 25 O -0.21 -6.86 18.46 18.88 0.35 -6.51 16 26 O -0.12 -3.12 15.39 18.89 0.29 -2.82 16 27 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.45 5.99 -2.39 -0.01 1.43 16 29 H 0.11 0.78 8.01 -2.39 -0.02 0.76 16 30 H 0.21 1.23 8.04 -2.91 -0.02 1.20 16 31 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.13 4.69 4.52 -2.39 -0.01 4.68 16 33 H 0.16 4.36 8.09 -2.39 -0.02 4.34 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 36 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 37 H 0.08 3.29 7.63 -2.39 -0.02 3.27 16 38 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.17 4.33 7.12 -2.91 -0.02 4.31 16 Total: -1.00 -78.10 342.05 1.54 -76.56 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.91 Total: 18.86 kcal Atomic # 6 Polarization: -68.45 SS G_CDS: 3.00 Total: -65.45 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.09 Total: -56.27 kcal Atomic # 8 Polarization: -116.05 SS G_CDS: -3.92 Total: -119.98 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.74 Total: 44.36 kcal Atomic # 16 Polarization: 102.19 SS G_CDS: -0.27 Total: 101.92 kcal Total: -78.10 1.54 -76.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830950529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.549 kcal (2) G-P(sol) polarization free energy of solvation -78.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds