Wall clock time and date at job start Sat Apr 11 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47123 * 294.99345 * 3 2 1 5 5 N 1.46504 * 109.46871 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99638 * 269.99491 * 5 4 3 7 7 C 1.50698 * 109.47461 * 269.99845 * 6 5 4 8 8 H 1.07991 * 120.00008 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99828 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00254 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00034 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46803 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47328 * 119.99848 * 11 9 7 14 14 H 1.48503 * 109.47079 * 240.00307 * 11 9 7 15 15 C 1.34780 * 120.00222 * 90.00412 * 5 4 3 16 16 O 1.21277 * 120.00144 * 179.97438 * 15 5 4 17 17 C 1.50696 * 119.99833 * 359.97438 * 15 5 4 18 18 O 1.42901 * 109.47174 * 180.02562 * 17 15 5 19 19 C 1.35987 * 116.99819 * 179.97438 * 18 17 15 20 20 C 1.38549 * 120.45029 * 0.02562 * 19 18 17 21 21 N 1.31933 * 120.73100 * 179.97438 * 20 19 18 22 22 C 1.32044 * 121.76988 * 0.02562 * 21 20 19 23 23 F 1.35104 * 119.58226 * 180.02562 * 22 21 20 24 24 C 1.38476 * 120.83011 * 0.02562 * 22 21 20 25 25 C 1.38610 * 119.18092 * 0.25677 * 24 22 21 26 26 Cl 1.73604 * 120.81019 * 179.74911 * 25 24 22 27 27 H 1.08997 * 109.46857 * 174.99344 * 3 2 1 28 28 H 1.08998 * 109.47195 * 54.99485 * 3 2 1 29 29 H 1.08997 * 109.47254 * 60.00242 * 4 3 2 30 30 H 1.08998 * 109.47199 * 300.00138 * 4 3 2 31 31 H 1.09000 * 109.47160 * 30.00564 * 6 5 4 32 32 H 1.09009 * 109.46808 * 150.00352 * 6 5 4 33 33 H 0.96999 * 119.99839 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.46989 * 60.00434 * 17 15 5 35 35 H 1.09001 * 109.47386 * 300.00303 * 17 15 5 36 36 H 1.07994 * 119.63795 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.40581 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1183 -0.6086 1.3074 5 7 4.5834 -0.6073 1.3076 6 6 5.3168 -1.7566 0.7715 7 6 5.5687 -2.7511 1.8754 8 1 5.2173 -2.5477 2.8760 9 6 6.2470 -3.9212 1.6075 10 7 6.6746 -4.1693 0.3888 11 14 6.5587 -5.1544 2.9757 12 1 5.9813 -4.6424 4.2445 13 1 5.9217 -6.4501 2.6288 14 1 8.0213 -5.3505 3.1416 15 6 5.2563 0.4510 1.8011 16 8 6.4691 0.4518 1.8017 17 6 4.5018 1.6334 2.3521 18 8 5.4295 2.6187 2.8109 19 6 4.9087 3.7575 3.3410 20 6 3.5364 3.9307 3.4221 21 7 3.0251 5.0331 3.9358 22 6 3.7906 6.0087 4.3895 23 9 3.2199 7.1184 4.9073 24 6 5.1709 5.9086 4.3413 25 6 5.7475 4.7687 3.8035 26 17 7.4733 4.6016 3.7163 27 1 2.9709 1.0245 -0.0897 28 1 2.9717 -0.5887 -0.8417 29 1 2.7555 -1.6325 1.3971 30 1 2.7547 -0.0192 2.1491 31 1 4.7283 -2.2284 -0.0153 32 1 6.2691 -1.4206 0.3611 33 1 7.1521 -4.9923 0.2005 34 1 3.8750 1.3092 3.1829 35 1 3.8752 2.0613 1.5696 36 1 2.8780 3.1547 3.0607 37 1 5.7904 6.7109 4.7140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325847861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:43 Heat of formation + Delta-G solvation = -45.311480 kcal Electronic energy + Delta-G solvation = -26173.902062 eV Core-core repulsion = 21893.298615 eV Total energy + Delta-G solvation = -4280.603447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.34471 -41.16834 -39.60562 -38.12427 -37.01817 -36.95077 -35.41052 -33.04581 -32.79346 -31.02101 -30.70657 -29.19044 -26.90605 -24.56979 -24.17305 -23.68113 -22.69419 -19.21340 -18.99194 -18.35094 -18.05450 -17.66832 -16.81539 -16.55877 -16.41749 -16.16799 -15.79979 -15.30482 -15.08837 -14.84621 -14.52827 -14.36540 -14.15264 -13.84113 -13.67037 -13.54912 -13.20011 -12.89190 -12.58910 -12.46064 -12.41679 -12.26807 -11.92865 -11.56269 -11.38771 -11.33034 -11.09914 -10.95499 -10.73548 -10.30041 -10.25522 -9.98741 -9.80649 -9.26281 -8.79826 -8.55928 -8.05923 -6.17708 -4.22892 0.29861 0.45812 1.54762 2.33165 2.61805 2.70706 2.94734 2.99018 3.13648 3.23321 3.32147 3.34691 3.52429 3.84471 3.98376 4.18415 4.34469 4.41154 4.61275 4.65254 4.75634 4.78802 4.88465 4.93739 4.98874 5.17984 5.18412 5.28061 5.65778 5.86039 5.90039 6.54763 6.80033 7.05159 7.17486 7.27403 7.46801 7.77743 7.99226 8.05755 8.61349 8.82475 9.43312 10.90497 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.003148 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.215041 B = 8892.665481 C =10778.043774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.214 3.786 3 C -0.052 4.052 4 C 0.112 3.888 5 N -0.591 5.591 6 C 0.246 3.754 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.511 3.489 16 O -0.502 6.502 17 C 0.027 3.973 18 O -0.262 6.262 19 C 0.087 3.913 20 C 0.064 3.936 21 N -0.471 5.471 22 C 0.279 3.721 23 F -0.107 7.107 24 C -0.146 4.146 25 C -0.005 4.005 26 Cl -0.013 7.013 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.180 0.820 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 17.831 4.165 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.105 4.105 3 C -0.093 4.093 4 C -0.014 4.014 5 N -0.324 5.324 6 C 0.128 3.872 7 C -0.571 4.571 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.295 3.705 16 O -0.376 6.376 17 C -0.051 4.051 18 O -0.171 6.171 19 C 0.037 3.963 20 C -0.094 4.094 21 N -0.186 5.186 22 C 0.125 3.875 23 F -0.086 7.086 24 C -0.168 4.168 25 C -0.040 4.040 26 Cl 0.016 6.984 27 H 0.123 0.877 28 H 0.139 0.861 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.197 0.803 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.462 17.724 4.069 19.299 hybrid contribution 1.194 -0.689 0.737 1.563 sum -5.268 17.035 4.806 18.467 Atomic orbital electron populations 1.81240 1.12989 1.08947 1.08508 1.29044 0.95037 0.93075 0.93298 1.19901 0.81520 1.04887 1.03015 1.21404 0.81950 1.03697 0.94352 1.48163 1.04969 1.18568 1.60730 1.19439 0.92675 0.80687 0.94366 1.21424 1.37037 1.02867 0.95799 0.92193 1.24910 0.95162 0.98087 0.95721 1.69919 1.38018 1.25848 1.19250 0.86452 0.78198 0.80821 0.82023 1.19754 1.20932 1.20821 1.19544 0.88157 0.82926 0.79874 1.90776 1.13178 1.79659 1.53968 1.22998 0.92401 0.89083 1.00633 1.86347 1.33717 1.23754 1.73314 1.19854 0.92455 0.88154 0.95855 1.22717 0.91089 0.95577 1.00042 1.66883 1.40815 1.00792 1.10099 1.17732 0.86984 0.84694 0.98094 1.91648 1.85650 1.47709 1.83626 1.21598 0.94077 0.98825 1.02296 1.20374 0.87748 0.93745 1.02152 1.98450 1.06004 1.97464 1.96470 0.87652 0.86138 0.88078 0.90759 0.94254 0.93307 0.92600 0.88593 0.88880 0.80306 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.87 18.54 42.16 0.78 -5.09 16 2 C 0.21 2.22 15.43 -20.76 -0.32 1.90 16 3 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 4 C 0.11 1.22 5.17 -4.04 -0.02 1.20 16 5 N -0.59 -9.55 2.46 -175.06 -0.43 -9.98 16 6 C 0.25 5.40 5.16 -5.19 -0.03 5.38 16 7 C -0.53 -13.48 9.39 -34.44 -0.32 -13.80 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 11 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.51 8.48 7.75 -10.99 -0.09 8.40 16 16 O -0.50 -11.13 16.08 -14.35 -0.23 -11.36 16 17 C 0.03 0.30 3.78 36.00 0.14 0.43 16 18 O -0.26 -3.42 9.23 -39.61 -0.37 -3.78 16 19 C 0.09 0.95 6.70 -39.08 -0.26 0.69 16 20 C 0.06 0.60 10.22 -17.39 -0.18 0.42 16 21 N -0.47 -5.12 10.37 -13.50 -0.14 -5.26 16 22 C 0.28 2.82 8.40 -17.37 -0.15 2.68 16 23 F -0.11 -1.09 17.29 2.25 0.04 -1.05 16 24 C -0.15 -1.27 9.90 -39.36 -0.39 -1.66 16 25 C 0.00 -0.05 6.38 -39.06 -0.25 -0.30 16 26 Cl -0.01 -0.15 28.64 -51.86 -1.48 -1.63 16 27 H 0.11 0.64 7.22 -51.93 -0.37 0.26 16 28 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.07 0.60 6.44 -51.93 -0.33 0.26 16 31 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.05 1.24 7.42 -51.92 -0.39 0.86 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.10 0.80 6.94 -51.93 -0.36 0.44 16 35 H 0.09 0.66 6.72 -51.93 -0.35 0.31 16 36 H 0.18 1.15 6.31 -52.49 -0.33 0.82 16 37 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -33.36 356.02 -6.25 -39.62 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -3.36 Total: -4.86 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.14 Total: 6.32 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.95 Total: -44.14 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.60 Total: -15.14 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.48 Total: -1.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.36 -6.25 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325847861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.696 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds