Wall clock time and date at job start Sat Apr 11 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00021 * 2 1 4 4 H 1.48498 * 109.47469 * 270.00207 * 3 2 1 5 5 H 1.48502 * 109.46713 * 30.00764 * 3 2 1 6 6 H 1.48502 * 109.46749 * 149.99993 * 3 2 1 7 7 C 1.37879 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00035 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46641 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46633 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99600 * 180.02562 * 11 10 9 13 13 O 1.21367 * 119.99955 * 359.97438 * 12 11 10 14 14 C 1.49311 * 119.99822 * 179.97438 * 12 11 10 15 15 O 1.21381 * 119.99552 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99822 * 179.97438 * 14 12 11 17 17 C 1.38751 * 119.99848 * 180.02562 * 16 14 12 18 18 N 1.28746 * 125.04277 * 180.02562 * 17 16 14 19 19 C 1.33840 * 118.17478 * 180.10993 * 18 17 16 20 20 C 1.33780 * 112.68851 * 359.52855 * 19 18 17 21 21 S 1.70670 * 125.04132 * 359.96835 * 17 16 14 22 22 C 1.51551 * 127.88016 * 180.53117 * 20 19 18 23 23 S 1.81702 * 108.70638 * 342.85535 * 22 20 19 24 24 C 1.81934 * 101.22087 * 44.42249 * 23 22 20 25 25 C 1.51833 * 120.21332 * 179.46685 * 19 18 17 26 26 H 0.96999 * 119.99963 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47118 * 60.00047 * 9 7 2 28 28 H 1.09001 * 109.47160 * 300.00068 * 9 7 2 29 29 H 1.09000 * 109.47316 * 60.00180 * 10 9 7 30 30 H 1.08997 * 109.46944 * 299.99934 * 10 9 7 31 31 H 0.96998 * 120.00000 * 359.97438 * 11 10 9 32 32 H 0.96998 * 120.00400 * 359.97438 * 16 14 12 33 33 H 1.08996 * 109.59764 * 223.08966 * 22 20 19 34 34 H 1.08994 * 109.59973 * 102.61853 * 22 20 19 35 35 H 1.09006 * 109.62347 * 175.43057 * 24 23 22 36 36 H 1.09000 * 109.78259 * 54.95546 * 24 23 22 37 37 H 1.09001 * 109.04864 * 39.17215 * 25 19 18 38 38 H 1.08996 * 109.04638 * 280.27901 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6365 -0.0009 12 6 6.1604 -3.8038 -0.0014 13 8 5.5535 -4.8548 -0.0013 14 6 7.6535 -3.8038 -0.0019 15 8 8.2603 -2.7525 -0.0024 16 7 8.3273 -4.9710 -0.0018 17 6 9.7148 -4.9710 -0.0017 18 7 10.4541 -6.0251 -0.0021 19 6 11.7829 -5.8650 0.0003 20 6 12.1476 -4.5779 -0.0074 21 16 10.6948 -3.5737 -0.0026 22 6 13.5522 -4.0088 -0.0187 23 16 14.7131 -5.3121 0.4868 24 6 14.0986 -6.7271 -0.4777 25 6 12.6983 -7.0763 0.0122 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6800 -0.8911 29 1 3.6578 -3.1506 -0.8907 30 1 3.6585 -3.1502 0.8892 31 1 5.9715 -1.7965 -0.0014 32 1 7.8424 -5.8110 -0.0010 33 1 13.6138 -3.1736 0.6790 34 1 13.8004 -3.6678 -1.0237 35 1 14.7599 -7.5818 -0.3355 36 1 14.0617 -6.4647 -1.5350 37 1 12.2773 -7.8467 -0.6338 38 1 12.7633 -7.4630 1.0291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326787774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:48 Heat of formation + Delta-G solvation = -22.063887 kcal Electronic energy + Delta-G solvation = -23412.750501 eV Core-core repulsion = 19701.412028 eV Total energy + Delta-G solvation = -3711.338473 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33503 -40.17707 -38.86776 -36.28621 -35.30108 -33.86531 -32.92903 -31.94291 -30.47141 -27.97318 -26.22157 -24.90212 -24.38122 -22.71802 -21.33638 -21.01389 -20.04066 -18.83113 -18.15888 -17.50784 -17.03865 -16.71282 -16.50446 -16.21571 -15.58881 -15.29872 -15.07874 -14.68170 -14.61149 -14.26385 -14.02728 -13.99567 -13.74363 -13.38691 -13.30884 -12.80781 -12.69669 -12.54337 -12.13413 -11.63405 -11.35854 -11.13293 -11.12387 -10.57014 -10.53945 -10.40556 -10.09700 -10.05231 -9.80932 -9.44522 -9.44150 -9.01502 -8.69275 -8.65797 -8.22374 -6.19126 -4.20702 0.18326 0.59695 1.06150 1.16626 1.39346 1.71986 2.06694 2.32285 2.94879 3.20790 3.22744 3.29423 3.29683 3.86907 4.11895 4.27056 4.29753 4.30970 4.54060 4.66264 4.74064 4.98695 5.06254 5.13664 5.18533 5.29808 5.40799 5.76932 5.79283 5.95965 6.15402 6.24206 6.34582 6.86148 7.02399 7.06857 7.29109 7.39972 7.53895 7.87325 8.33393 8.83634 9.40197 10.93455 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.031676 B = 0.001930 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.727214 B =14502.254121 C =15317.208525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.126 3.874 11 N -0.682 5.682 12 C 0.510 3.490 13 O -0.515 6.515 14 C 0.510 3.490 15 O -0.483 6.483 16 N -0.599 5.599 17 C 0.258 3.742 18 N -0.514 5.514 19 C 0.103 3.897 20 C -0.286 4.286 21 S 0.251 5.749 22 C 0.000 4.000 23 S -0.238 6.238 24 C -0.082 4.082 25 C -0.041 4.041 26 H 0.266 0.734 27 H 0.026 0.974 28 H 0.021 0.979 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.411 0.589 32 H 0.437 0.563 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.034 -10.854 -1.025 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.333 5.333 12 C 0.288 3.712 13 O -0.391 6.391 14 C 0.291 3.709 15 O -0.355 6.355 16 N -0.251 5.251 17 C -0.111 4.111 18 N -0.237 5.237 19 C -0.028 4.028 20 C -0.408 4.408 21 S 0.502 5.498 22 C -0.150 4.150 23 S -0.012 6.012 24 C -0.230 4.230 25 C -0.082 4.082 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.247 0.753 32 H 0.278 0.722 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 30.086 -10.043 -0.303 31.719 hybrid contribution -0.300 0.042 -0.831 0.884 sum 29.786 -10.001 -1.134 31.441 Atomic orbital electron populations 1.69890 1.06292 1.27213 1.49896 1.24986 0.94779 0.99186 0.94191 0.86770 0.80313 0.83501 0.78633 1.20126 1.21167 1.18976 1.20841 0.88289 0.95011 1.52351 0.90482 1.19838 0.98248 0.90696 0.97354 1.21837 0.73832 1.01246 1.02582 1.46223 1.09867 1.07578 1.69669 1.19195 0.85791 0.85837 0.80363 1.90820 1.68701 1.30785 1.48829 1.21011 0.90494 0.82789 0.76642 1.90708 1.68889 1.30311 1.45639 1.42491 1.01721 1.11848 1.69039 1.22755 0.89735 0.95191 1.03424 1.66043 1.04797 1.30891 1.21928 1.20284 0.88153 0.93337 1.01056 1.26129 1.00799 0.97357 1.16545 1.85086 0.91407 1.04840 1.68512 1.21821 0.88746 0.98673 1.05758 1.87099 1.42976 1.08215 1.62905 1.23349 0.98695 0.99127 1.01852 1.20255 0.90594 0.93448 1.03936 0.92418 0.95617 0.96059 0.90846 0.90821 0.75311 0.72167 0.86458 0.87982 0.86403 0.89128 0.88635 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.42 27.47 -169.99 -4.67 15.75 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 7 C -0.53 -14.05 9.66 -34.44 -0.33 -14.38 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 10 C 0.13 2.30 5.61 -4.04 -0.02 2.28 16 11 N -0.68 -10.29 5.55 -60.77 -0.34 -10.63 16 12 C 0.51 7.39 7.88 -11.65 -0.09 7.29 16 13 O -0.51 -8.53 16.48 5.48 0.09 -8.44 16 14 C 0.51 6.44 7.85 -11.65 -0.09 6.35 16 15 O -0.48 -6.43 13.95 5.47 0.08 -6.35 16 16 N -0.60 -6.86 5.39 -13.81 -0.07 -6.94 16 17 C 0.26 3.04 8.17 -88.30 -0.72 2.32 16 18 N -0.51 -6.02 10.49 -10.78 -0.11 -6.13 16 19 C 0.10 1.02 6.61 -82.72 -0.55 0.48 16 20 C -0.29 -2.67 6.34 -35.45 -0.22 -2.89 16 21 S 0.25 2.63 20.17 -107.50 -2.17 0.46 16 22 C 0.00 0.00 6.78 36.42 0.25 0.25 16 23 S -0.24 -1.77 22.32 -107.50 -2.40 -4.17 16 24 C -0.08 -0.45 6.48 36.85 0.24 -0.21 16 25 C -0.04 -0.29 5.97 -27.63 -0.16 -0.45 16 26 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.54 7.20 -51.93 -0.37 0.17 16 28 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.41 5.57 7.94 -40.82 -0.32 5.24 16 32 H 0.44 4.53 8.29 -40.82 -0.34 4.20 16 33 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -31.00 349.93 -9.87 -40.87 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.40 Total: 3.70 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.92 Total: 2.28 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.25 Total: -49.38 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.17 Total: -14.79 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -4.57 Total: -3.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.00 -9.87 -40.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326787774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.803 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds