Wall clock time and date at job start Sat Apr 11 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47188 * 357.36608 * 3 2 1 5 5 C 1.36938 * 120.00173 * 274.78754 * 4 3 2 6 6 H 1.07994 * 120.00087 * 16.16181 * 5 4 3 7 7 C 1.38812 * 119.99861 * 196.17444 * 5 4 3 8 8 N 1.31616 * 120.00374 * 14.53337 * 7 5 4 9 9 Si 1.86805 * 119.99771 * 194.54556 * 7 5 4 10 10 H 1.48492 * 109.47140 * 59.99067 * 9 7 5 11 11 H 1.48500 * 109.46807 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46659 * 299.99147 * 9 7 5 13 13 C 1.46502 * 119.99874 * 94.78830 * 4 3 2 14 14 C 1.50703 * 109.46908 * 83.66851 * 13 4 3 15 15 C 1.38255 * 119.99887 * 353.29290 * 14 13 4 16 16 C 1.38216 * 120.02919 * 180.25257 * 15 14 13 17 17 C 1.38237 * 120.01423 * 359.79112 * 16 15 14 18 18 C 1.38333 * 119.98167 * 359.97438 * 17 16 15 19 19 Cl 1.73607 * 120.00906 * 179.97438 * 18 17 16 20 20 C 1.38202 * 119.98971 * 173.08164 * 14 13 4 21 21 S 1.76200 * 120.00458 * 0.02562 * 20 14 13 22 22 O 1.42103 * 104.27243 * 157.31794 * 21 20 14 23 23 O 1.42098 * 104.28077 * 29.45778 * 21 20 14 24 24 C 1.81402 * 104.44690 * 273.38631 * 21 20 14 25 25 C 1.52997 * 109.47008 * 175.28195 * 24 21 20 26 26 H 4.40636 * 5.51306 * 180.02562 * 4 1 2 27 27 H 1.09006 * 109.46725 * 237.37004 * 3 2 1 28 28 H 1.08995 * 109.47010 * 117.37232 * 3 2 1 29 29 H 0.96998 * 120.00073 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.46685 * 323.67167 * 13 4 3 31 31 H 1.08998 * 109.47003 * 203.66836 * 13 4 3 32 32 H 1.08002 * 119.98615 * 0.02562 * 15 14 13 33 33 H 1.08005 * 119.99393 * 179.77343 * 16 15 14 34 34 H 1.07999 * 120.00805 * 180.02562 * 17 16 15 35 35 H 1.09004 * 109.47191 * 55.27896 * 24 21 20 36 36 H 1.09003 * 109.47117 * 295.28230 * 24 21 20 37 37 H 1.08995 * 109.47093 * 299.99748 * 25 24 21 38 38 H 1.09002 * 109.47134 * 60.00303 * 25 24 21 39 39 H 1.09001 * 109.47085 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3788 0.0635 5 6 3.2702 -2.0023 1.2752 6 1 2.7840 -1.5951 2.1492 7 6 4.0324 -3.1577 1.3800 8 7 4.8497 -3.4976 0.4059 9 14 3.8980 -4.2303 2.9035 10 1 2.4998 -4.7082 3.0505 11 1 4.8078 -5.3963 2.7697 12 1 4.2793 -3.4391 4.1010 13 6 3.4793 -2.0914 -1.1694 14 6 4.8848 -1.7347 -1.5799 15 6 5.5759 -0.7512 -0.8968 16 6 6.8631 -0.4199 -1.2760 17 6 7.4618 -1.0749 -2.3360 18 6 6.7726 -2.0623 -3.0167 19 17 7.5236 -2.8848 -4.3484 20 6 5.4842 -2.3938 -2.6364 21 16 4.6051 -3.6506 -3.5037 22 8 5.2424 -3.7121 -4.7723 23 8 3.2413 -3.2688 -3.3867 24 6 4.9261 -5.1637 -2.5560 25 6 4.1141 -6.3177 -3.1474 26 1 -1.0497 -0.0004 -0.0002 27 1 3.0090 0.5550 0.8655 28 1 3.0091 0.4733 -0.9126 29 1 5.3821 -4.3051 0.4790 30 1 2.7860 -1.8049 -1.9602 31 1 3.4122 -3.1659 -0.9989 32 1 5.1084 -0.2390 -0.0688 33 1 7.4011 0.3510 -0.7443 34 1 8.4677 -0.8162 -2.6319 35 1 4.6355 -5.0101 -1.5168 36 1 5.9881 -5.4044 -2.6046 37 1 3.0522 -6.0771 -3.0989 38 1 4.4048 -6.4714 -4.1867 39 1 4.3074 -7.2270 -2.5783 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334332651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:53 Heat of formation + Delta-G solvation = 37.180325 kcal Electronic energy + Delta-G solvation = -26512.227536 eV Core-core repulsion = 22769.121627 eV Total energy + Delta-G solvation = -3743.105909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.37542 -38.40915 -37.65155 -37.13611 -36.85786 -34.40542 -33.95223 -33.06188 -32.25420 -31.34582 -28.08264 -27.52504 -25.07045 -24.06739 -23.68401 -22.15880 -19.97832 -19.21785 -18.96564 -18.12497 -17.25362 -17.11984 -16.96430 -16.77166 -16.13743 -15.58912 -15.50508 -15.25590 -15.07842 -14.89840 -14.57911 -14.05343 -13.98242 -13.70075 -13.44170 -13.33576 -13.16245 -13.07037 -12.97228 -12.92829 -12.62624 -12.36043 -12.29756 -12.13194 -12.04435 -11.98988 -11.69938 -11.40629 -11.16792 -11.00717 -10.87892 -10.59394 -10.02233 -9.29557 -8.96516 -7.82502 -5.25030 -0.74498 0.02773 0.54528 1.10423 1.49998 1.54403 1.57876 1.99920 2.02724 2.11490 2.56565 2.63640 3.07688 3.28271 3.32572 3.68176 3.81350 3.83087 3.89375 4.08877 4.24931 4.41459 4.47650 4.49850 4.69517 4.75536 4.83760 4.88820 4.96113 5.01843 5.04335 5.08185 5.16792 5.32796 5.40135 5.51548 5.69320 5.85103 6.05502 6.30803 6.91871 7.14825 7.78598 8.22668 9.20387 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.010866 B = 0.005622 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.329641 B = 4979.321174 C = 5306.287053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.217 4.217 3 C 0.236 3.764 4 N -0.594 5.594 5 C -0.257 4.257 6 H 0.069 0.931 7 C -0.029 4.029 8 N -0.915 5.915 9 Si 0.955 3.045 10 H -0.292 1.292 11 H -0.291 1.291 12 H -0.285 1.285 13 C 0.183 3.817 14 C 0.089 3.911 15 C -0.123 4.123 16 C -0.059 4.059 17 C -0.156 4.156 18 C 0.034 3.966 19 Cl -0.047 7.047 20 C -0.678 4.678 21 S 2.488 3.512 22 O -0.953 6.953 23 O -0.970 6.970 24 C -0.595 4.595 25 C -0.152 4.152 26 H 0.241 0.759 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.255 0.745 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 0.812 -4.975 6.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.219 4.219 3 C 0.110 3.890 4 N -0.313 5.313 5 C -0.386 4.386 6 H 0.087 0.913 7 C -0.224 4.224 8 N -0.561 5.561 9 Si 0.785 3.215 10 H -0.219 1.219 11 H -0.217 1.217 12 H -0.211 1.211 13 C 0.057 3.943 14 C 0.085 3.915 15 C -0.142 4.142 16 C -0.077 4.077 17 C -0.176 4.176 18 C 0.006 3.994 19 Cl -0.018 7.018 20 C -0.767 4.767 21 S 2.672 3.328 22 O -0.950 6.950 23 O -0.967 6.967 24 C -0.727 4.727 25 C -0.210 4.210 26 H 0.257 0.743 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.536 0.712 -5.830 6.856 hybrid contribution 0.330 -0.720 1.712 1.886 sum 3.866 -0.008 -4.119 5.649 Atomic orbital electron populations 1.25600 0.96764 1.00673 1.01965 1.25348 0.96963 0.99966 0.99649 1.18104 0.82841 0.86512 1.01520 1.44095 1.74333 1.10109 1.02800 1.19386 1.24643 1.07142 0.87469 0.91346 1.25213 0.97049 1.00328 0.99853 1.70021 1.26592 1.26039 1.33481 0.85552 0.76678 0.78792 0.80513 1.21883 1.21694 1.21095 1.20262 0.88845 0.99029 0.86150 1.20373 0.97205 0.88048 0.85879 1.21274 0.95126 0.98319 0.99515 1.21629 0.94179 0.97600 0.94303 1.21204 1.01352 0.97316 0.97693 1.20528 0.91941 0.96067 0.90898 1.98393 1.81402 1.77261 1.44714 1.29764 1.07327 1.23762 1.15857 1.05421 0.74215 0.77515 0.75638 1.93605 1.76108 1.87036 1.38278 1.93517 1.34016 1.81942 1.87271 1.30059 1.11612 1.15464 1.15613 1.21682 0.99509 0.97424 1.02416 0.74286 0.89867 0.90265 0.93498 0.92893 0.88830 0.85175 0.82419 0.82611 0.84040 0.83551 0.91236 0.89868 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.83 19.25 74.32 1.43 -6.40 16 2 C -0.22 -8.37 13.64 31.12 0.42 -7.95 16 3 C 0.24 9.09 4.78 84.57 0.40 9.49 16 4 N -0.59 -26.83 1.46 -716.92 -1.04 -27.87 16 5 C -0.26 -12.51 9.70 84.03 0.82 -11.69 16 6 H 0.07 3.35 7.87 -2.91 -0.02 3.33 16 7 C -0.03 -1.39 5.07 84.86 0.43 -0.96 16 8 N -0.91 -43.26 7.90 21.65 0.17 -43.09 16 9 Si 0.95 40.81 29.58 68.60 2.03 42.84 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.18 8.38 3.41 85.63 0.29 8.68 16 14 C 0.09 3.72 4.08 -19.87 -0.08 3.64 16 15 C -0.12 -4.69 8.91 22.27 0.20 -4.49 16 16 C -0.06 -1.83 10.05 22.26 0.22 -1.61 16 17 C -0.16 -4.79 9.83 22.29 0.22 -4.57 16 18 C 0.03 1.18 6.30 22.32 0.14 1.32 16 19 Cl -0.05 -1.52 25.40 -2.72 -0.07 -1.59 16 20 C -0.68 -26.49 5.66 22.29 0.13 -26.37 16 21 S 2.49 92.79 4.62 -56.49 -0.26 92.53 16 22 O -0.95 -36.31 14.41 -127.65 -1.84 -38.15 16 23 O -0.97 -41.50 14.26 -127.65 -1.82 -43.32 16 24 C -0.60 -18.65 6.70 71.98 0.48 -18.17 16 25 C -0.15 -3.86 9.92 71.98 0.71 -3.15 16 26 H 0.24 5.83 7.80 -4.43 -0.03 5.80 16 27 H 0.08 2.97 8.08 -2.38 -0.02 2.95 16 28 H 0.08 2.82 7.91 -2.39 -0.02 2.80 16 29 H 0.25 11.79 8.02 -92.71 -0.74 11.05 16 30 H 0.05 2.54 6.63 -2.39 -0.02 2.52 16 31 H 0.09 4.60 5.01 -2.39 -0.01 4.59 16 32 H 0.13 5.08 6.00 -2.91 -0.02 5.06 16 33 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 34 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.14 5.05 6.19 -2.39 -0.01 5.03 16 36 H 0.15 3.96 8.14 -2.39 -0.02 3.94 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -60.04 348.41 4.08 -55.96 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 1.10 Total: 24.92 kcal Atomic # 6 Polarization: -68.05 SS G_CDS: 5.82 Total: -62.23 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -0.87 Total: -70.96 kcal Atomic # 8 Polarization: -77.81 SS G_CDS: -3.66 Total: -81.47 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 92.79 SS G_CDS: -0.26 Total: 92.53 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.59 kcal Total: -60.04 4.08 -55.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334332651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.137 kcal (2) G-P(sol) polarization free energy of solvation -60.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds