Wall clock time and date at job start Sat Apr 11 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48510 * 109.47164 * 239.99975 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46969 * 120.00218 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.34777 * 119.99511 * 65.28308 * 14 11 10 16 16 O 1.21763 * 120.00155 * 359.71908 * 15 14 11 17 17 C 1.46272 * 119.99755 * 179.72237 * 15 14 11 18 18 N 1.32550 * 125.57090 * 359.69152 * 17 15 14 19 19 C 1.32019 * 109.85383 * 179.88445 * 18 17 15 20 20 C 1.39324 * 107.93379 * 0.37593 * 19 18 17 21 21 C 1.40611 * 133.41607 * 179.80143 * 20 19 18 22 22 F 1.35101 * 120.42524 * 359.97438 * 21 20 19 23 23 C 1.36553 * 119.14793 * 179.97438 * 21 20 19 24 24 C 1.40295 * 119.56105 * 359.97438 * 23 21 20 25 25 C 1.35157 * 120.42078 * 359.97438 * 24 23 21 26 26 N 1.36227 * 120.65203 * 0.03378 * 25 24 23 27 27 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47065 * 60.00657 * 9 7 2 29 29 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 30 30 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 31 31 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 32 32 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 33 33 H 1.08003 * 126.02955 * 180.15112 * 19 18 17 34 34 H 1.07998 * 120.22245 * 180.02562 * 23 21 20 35 35 H 1.08005 * 119.78748 * 180.02562 * 24 23 21 36 36 H 1.08002 * 119.67656 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.3447 -6.5166 1.0558 16 8 3.2235 -5.7724 2.0119 17 6 4.3850 -7.5448 1.0564 18 7 4.6109 -8.4138 0.0813 19 6 5.6233 -9.1971 0.4044 20 6 6.0736 -8.8174 1.6670 21 6 7.1001 -9.2833 2.5074 22 9 7.8855 -10.3128 2.1220 23 6 7.2929 -8.6819 3.7181 24 6 6.4670 -7.6140 4.0999 25 6 5.4861 -7.1797 3.2777 26 7 5.2823 -7.7703 2.0671 27 1 -0.4850 0.8402 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8922 32 1 2.6168 -6.9855 -0.7650 33 1 6.0283 -9.9942 -0.2014 34 1 8.0765 -9.0255 4.3772 35 1 6.6165 -7.1354 5.0565 36 1 4.8576 -6.3563 3.5835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351510985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:58 Heat of formation + Delta-G solvation = -63.933387 kcal Electronic energy + Delta-G solvation = -26582.667960 eV Core-core repulsion = 22303.300713 eV Total energy + Delta-G solvation = -4279.367247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.068 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.60365 -43.47144 -39.95179 -38.05117 -36.74401 -35.67856 -34.66348 -33.92976 -33.57777 -31.49810 -31.21015 -29.09128 -25.68589 -25.14075 -24.35317 -22.93559 -21.87351 -21.57812 -19.60242 -19.10948 -18.09884 -17.68935 -17.54855 -17.10638 -16.79761 -16.49236 -16.10400 -16.03164 -15.56372 -15.27961 -15.04149 -14.71446 -14.59262 -14.52905 -14.34381 -13.47517 -12.95277 -12.65859 -12.58715 -12.55985 -12.44249 -11.83527 -11.77107 -11.67123 -11.10403 -11.08732 -11.04779 -11.04151 -10.97879 -10.81237 -10.43431 -10.37948 -9.99208 -9.74462 -9.22220 -8.51046 -8.14040 -6.13545 -4.19295 0.02893 0.11260 0.39814 1.60995 1.67953 2.60680 2.66667 2.84028 3.27193 3.31838 3.33616 3.33791 3.56420 3.78813 3.94441 4.03480 4.18293 4.27798 4.36069 4.49802 4.65532 4.82701 5.00570 5.17857 5.21665 5.22379 5.35771 5.55917 5.67462 5.78559 5.89718 6.30327 6.40246 6.48801 6.95998 7.25664 7.27555 7.32797 7.79103 8.14685 8.83362 9.45282 10.97485 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.002816 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.818391 B = 9942.068744 C =10969.136923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.574 4.574 11 S 2.566 3.434 12 O -0.945 6.945 13 O -0.934 6.934 14 N -1.038 6.038 15 C 0.638 3.362 16 O -0.494 6.494 17 C 0.092 3.908 18 N -0.394 5.394 19 C 0.016 3.984 20 C -0.009 4.009 21 C 0.139 3.861 22 F -0.114 7.114 23 C -0.141 4.141 24 C -0.108 4.108 25 C 0.056 3.944 26 N -0.305 5.305 27 H 0.266 0.734 28 H 0.035 0.965 29 H 0.037 0.963 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.438 0.562 33 H 0.197 0.803 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.602 -20.112 6.022 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.709 4.709 11 S 2.666 3.334 12 O -0.936 6.936 13 O -0.925 6.925 14 N -0.798 5.798 15 C 0.423 3.577 16 O -0.366 6.366 17 C -0.158 4.158 18 N -0.111 5.111 19 C -0.148 4.148 20 C -0.122 4.122 21 C 0.118 3.882 22 F -0.092 7.092 23 C -0.163 4.163 24 C -0.128 4.128 25 C -0.066 4.066 26 N 0.026 4.974 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.275 0.725 33 H 0.214 0.786 34 H 0.174 0.826 35 H 0.185 0.815 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 14.776 -19.572 5.990 25.244 hybrid contribution 1.780 0.582 0.229 1.887 sum 16.556 -18.990 6.220 25.950 Atomic orbital electron populations 1.69948 1.06103 1.27372 1.49377 1.25058 0.94994 0.99522 0.94834 0.86505 0.79482 0.82420 0.78727 1.20048 1.21043 1.20055 1.20935 0.93072 0.89562 1.52434 0.92000 1.19002 0.92602 0.90195 0.99137 1.30354 1.13767 1.15868 1.10928 1.06839 0.74793 0.77113 0.74640 1.93610 1.69912 1.85147 1.44931 1.93601 1.70067 1.84306 1.44476 1.55194 1.47967 1.50445 1.26148 1.15844 0.78802 0.81075 0.81940 1.91049 1.69900 1.42933 1.32691 1.22171 1.00568 1.05788 0.87241 1.69965 1.14228 1.02945 1.23924 1.22818 0.96304 1.02800 0.92834 1.19698 0.98033 0.95518 0.98973 1.16333 0.90400 0.88465 0.93043 1.91573 1.71372 1.55044 1.91207 1.21282 1.02145 0.97388 0.95481 1.20845 0.94088 0.96998 1.00890 1.22327 1.00861 1.00195 0.83260 1.42229 1.21198 1.21087 1.12899 0.92417 0.94631 0.94490 0.85056 0.85782 0.72468 0.78602 0.82617 0.81502 0.79248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 10 C -0.57 -11.28 5.83 37.16 0.22 -11.06 16 11 S 2.57 47.13 5.11 -107.50 -0.55 46.58 16 12 O -0.95 -18.95 18.08 -57.54 -1.04 -19.99 16 13 O -0.93 -20.18 17.03 -64.81 -1.10 -21.28 16 14 N -1.04 -14.82 5.60 30.17 0.17 -14.65 16 15 C 0.64 9.41 7.51 -13.03 -0.10 9.31 16 16 O -0.49 -8.21 13.43 -12.06 -0.16 -8.38 16 17 C 0.09 1.19 7.82 -153.90 -1.20 -0.02 16 18 N -0.39 -4.69 10.79 -10.63 -0.11 -4.80 16 19 C 0.02 0.15 12.00 -17.07 -0.20 -0.05 16 20 C -0.01 -0.08 6.79 -84.16 -0.57 -0.66 16 21 C 0.14 1.06 7.34 -39.30 -0.29 0.77 16 22 F -0.11 -0.85 17.28 2.25 0.04 -0.81 16 23 C -0.14 -0.78 10.06 -39.42 -0.40 -1.18 16 24 C -0.11 -0.60 9.98 -39.90 -0.40 -1.00 16 25 C 0.06 0.49 10.52 -16.70 -0.18 0.31 16 26 N -0.31 -3.36 2.95 -58.84 -0.17 -3.53 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.13 2.47 7.20 -51.92 -0.37 2.10 16 31 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 32 H 0.44 5.06 8.43 -34.47 -0.29 4.77 16 33 H 0.20 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.16 0.44 8.06 -52.49 -0.42 0.01 16 35 H 0.17 0.39 8.06 -52.48 -0.42 -0.03 16 36 H 0.19 1.66 6.76 -52.49 -0.36 1.31 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -36.50 338.85 -8.88 -45.38 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.10 Total: 1.96 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -3.67 Total: -16.11 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.62 Total: -48.63 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.31 Total: -49.64 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 0.04 Total: -0.81 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 47.13 SS G_CDS: -0.55 Total: 46.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.50 -8.88 -45.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351510985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.555 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds