Wall clock time and date at job start Sat Apr 11 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48510 * 109.47164 * 239.99975 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46969 * 120.00218 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.34777 * 119.99511 * 65.28308 * 14 11 10 16 16 O 1.21763 * 120.00155 * 359.71908 * 15 14 11 17 17 C 1.46272 * 119.99755 * 179.72237 * 15 14 11 18 18 N 1.32550 * 125.57090 * 359.69152 * 17 15 14 19 19 C 1.32019 * 109.85383 * 179.88445 * 18 17 15 20 20 C 1.39324 * 107.93379 * 0.37593 * 19 18 17 21 21 C 1.40611 * 133.41607 * 179.80143 * 20 19 18 22 22 F 1.35101 * 120.42524 * 359.97438 * 21 20 19 23 23 C 1.36553 * 119.14793 * 179.97438 * 21 20 19 24 24 C 1.40295 * 119.56105 * 359.97438 * 23 21 20 25 25 C 1.35157 * 120.42078 * 359.97438 * 24 23 21 26 26 N 1.36227 * 120.65203 * 0.03378 * 25 24 23 27 27 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47065 * 60.00657 * 9 7 2 29 29 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 30 30 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 31 31 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 32 32 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 33 33 H 1.08003 * 126.02955 * 180.15112 * 19 18 17 34 34 H 1.07998 * 120.22245 * 180.02562 * 23 21 20 35 35 H 1.08005 * 119.78748 * 180.02562 * 24 23 21 36 36 H 1.08002 * 119.67656 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.3447 -6.5166 1.0558 16 8 3.2235 -5.7724 2.0119 17 6 4.3850 -7.5448 1.0564 18 7 4.6109 -8.4138 0.0813 19 6 5.6233 -9.1971 0.4044 20 6 6.0736 -8.8174 1.6670 21 6 7.1001 -9.2833 2.5074 22 9 7.8855 -10.3128 2.1220 23 6 7.2929 -8.6819 3.7181 24 6 6.4670 -7.6140 4.0999 25 6 5.4861 -7.1797 3.2777 26 7 5.2823 -7.7703 2.0671 27 1 -0.4850 0.8402 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8922 32 1 2.6168 -6.9855 -0.7650 33 1 6.0283 -9.9942 -0.2014 34 1 8.0765 -9.0255 4.3772 35 1 6.6165 -7.1354 5.0565 36 1 4.8576 -6.3563 3.5835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351510985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:57 Heat of formation + Delta-G solvation = -90.441989 kcal Electronic energy + Delta-G solvation = -26583.817460 eV Core-core repulsion = 22303.300713 eV Total energy + Delta-G solvation = -4280.516746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.068 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.15889 -44.21341 -41.09663 -38.72401 -38.35216 -37.30962 -35.99433 -35.79576 -34.27737 -33.20148 -32.18774 -29.82321 -27.67249 -26.03714 -25.01011 -23.69578 -23.62493 -22.68278 -20.87380 -20.16629 -19.29007 -18.69358 -18.43643 -18.39068 -17.89918 -17.38446 -17.32999 -16.92292 -16.65673 -16.58444 -16.54273 -16.02136 -15.82478 -15.25310 -15.21544 -14.95151 -14.49416 -13.98611 -13.79355 -13.47344 -13.44277 -13.33458 -13.26590 -13.18644 -12.93986 -12.86906 -12.40391 -12.28991 -12.12555 -11.98669 -11.81983 -11.75046 -11.69938 -11.13399 -10.67058 -10.64772 -8.82944 -8.27213 -6.41505 -1.13257 -0.65306 -0.55914 0.71356 0.83989 1.40640 1.44377 1.44956 1.52663 1.87808 2.04950 2.36382 2.48392 2.64548 2.74809 3.02368 3.06446 3.15357 3.33699 3.53921 3.59891 3.75903 3.94738 3.99117 4.03816 4.49628 4.60477 4.66140 4.74291 4.80267 5.13492 5.21032 5.21920 5.31201 5.39870 5.61129 5.65954 5.98265 6.03489 6.37669 6.70630 7.28377 8.85005 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.002816 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.818391 B = 9942.068744 C =10969.136923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.023 3.977 10 C -0.574 4.574 11 S 2.601 3.399 12 O -0.963 6.963 13 O -0.969 6.969 14 N -1.024 6.024 15 C 0.637 3.363 16 O -0.521 6.521 17 C 0.043 3.957 18 N -0.405 5.405 19 C 0.009 3.991 20 C -0.008 4.008 21 C 0.129 3.871 22 F -0.111 7.111 23 C -0.118 4.118 24 C -0.077 4.077 25 C 0.019 3.981 26 N -0.303 5.303 27 H 0.269 0.731 28 H 0.016 0.984 29 H 0.009 0.991 30 H 0.139 0.861 31 H 0.151 0.849 32 H 0.451 0.549 33 H 0.226 0.774 34 H 0.195 0.805 35 H 0.208 0.792 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.229 -21.091 7.210 30.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.200 4.200 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.093 0.907 9 C -0.016 4.016 10 C -0.708 4.708 11 S 2.701 3.299 12 O -0.954 6.954 13 O -0.959 6.959 14 N -0.788 5.788 15 C 0.425 3.575 16 O -0.396 6.396 17 C -0.202 4.202 18 N -0.122 5.122 19 C -0.156 4.156 20 C -0.123 4.123 21 C 0.107 3.893 22 F -0.090 7.090 23 C -0.140 4.140 24 C -0.097 4.097 25 C -0.103 4.103 26 N 0.028 4.972 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.028 0.972 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.291 0.709 33 H 0.242 0.758 34 H 0.213 0.787 35 H 0.225 0.775 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 18.385 -20.539 7.154 28.479 hybrid contribution 0.859 0.690 0.013 1.101 sum 19.244 -19.849 7.167 28.560 Atomic orbital electron populations 1.70093 1.08009 1.28505 1.50543 1.26104 0.95897 1.03816 0.94216 0.85347 0.78153 0.77197 0.79455 1.18663 1.20781 1.18899 1.21437 0.93957 0.90643 1.52059 0.90729 1.18848 0.93398 0.92428 0.96917 1.30230 1.12919 1.14867 1.12751 1.05507 0.74391 0.76687 0.73360 1.93578 1.70847 1.85449 1.45496 1.93552 1.71450 1.84845 1.46071 1.54638 1.47420 1.49736 1.27032 1.16063 0.78924 0.81285 0.81215 1.91020 1.70775 1.44264 1.33514 1.21546 1.02258 1.07271 0.89129 1.69889 1.15077 1.03169 1.24046 1.23405 0.95746 1.03076 0.93362 1.20111 0.98051 0.94830 0.99259 1.16481 0.90227 0.89006 0.93556 1.91588 1.71137 1.54952 1.91290 1.21811 1.01790 0.95732 0.94659 1.21405 0.91467 0.95634 1.01162 1.22635 1.02770 1.01352 0.83538 1.42303 1.20663 1.21148 1.13051 0.92260 0.96558 0.97234 0.84251 0.83050 0.70905 0.75789 0.78746 0.77544 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.98 43.46 29.54 68.60 2.03 45.49 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.02 1.24 4.98 29.85 0.15 1.39 16 10 C -0.57 -23.11 5.83 71.98 0.42 -22.69 16 11 S 2.60 98.94 5.11 -56.49 -0.29 98.65 16 12 O -0.96 -39.62 18.08 -127.65 -2.31 -41.92 16 13 O -0.97 -43.71 17.03 -120.70 -2.06 -45.77 16 14 N -1.02 -30.07 5.60 -176.64 -0.99 -31.05 16 15 C 0.64 19.38 7.51 86.33 0.65 20.03 16 16 O -0.52 -18.04 13.43 11.89 0.16 -17.88 16 17 C 0.04 1.14 7.82 135.56 1.06 2.20 16 18 N -0.40 -9.55 10.79 -187.56 -2.02 -11.57 16 19 C 0.01 0.16 12.00 84.93 1.02 1.18 16 20 C -0.01 -0.13 6.79 39.14 0.27 0.13 16 21 C 0.13 1.55 7.34 22.46 0.16 1.71 16 22 F -0.11 -1.30 17.28 44.97 0.78 -0.52 16 23 C -0.12 -0.75 10.06 22.38 0.23 -0.53 16 24 C -0.08 -0.56 9.98 22.06 0.22 -0.34 16 25 C 0.02 0.31 10.52 83.30 0.88 1.19 16 26 N -0.30 -6.46 2.95 -340.08 -1.00 -7.46 16 27 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.14 5.38 7.20 -2.39 -0.02 5.36 16 31 H 0.15 5.15 8.14 -2.39 -0.02 5.13 16 32 H 0.45 10.64 8.43 -96.74 -0.82 9.83 16 33 H 0.23 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.20 -0.17 8.06 -2.91 -0.02 -0.20 16 35 H 0.21 -0.14 8.06 -2.91 -0.02 -0.17 16 36 H 0.18 3.18 6.76 -2.91 -0.02 3.16 16 Total: -1.00 -82.14 338.85 0.67 -81.47 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.35 Total: 12.72 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 5.74 Total: -25.60 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -3.73 Total: -106.65 kcal Atomic # 8 Polarization: -101.37 SS G_CDS: -4.20 Total: -105.57 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.78 Total: -0.52 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 98.94 SS G_CDS: -0.29 Total: 98.65 kcal Total: -82.14 0.67 -81.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351510985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.969 kcal (2) G-P(sol) polarization free energy of solvation -82.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds