Wall clock time and date at job start Sat Apr 11 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86794 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47332 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47471 * 119.99495 * 3 2 1 6 6 H 1.48500 * 109.47424 * 239.99398 * 3 2 1 7 7 C 1.40313 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00406 * 158.56467 * 7 2 1 9 9 C 1.40514 * 119.99894 * 338.57716 * 7 2 1 10 10 C 1.44199 * 123.71766 * 335.24418 * 9 7 2 11 11 C 1.32755 * 114.43241 * 179.76202 * 10 9 7 12 12 S 1.75475 * 111.37086 * 0.49821 * 11 10 9 13 13 C 1.39580 * 123.72173 * 155.54369 * 9 7 2 14 14 C 1.46176 * 125.23259 * 359.97438 * 13 9 7 15 15 O 1.21785 * 119.99952 * 359.97438 * 14 13 9 16 16 N 1.34776 * 120.00444 * 179.97438 * 14 13 9 17 17 C 1.39769 * 119.99936 * 174.99125 * 16 14 13 18 18 C 1.38983 * 120.04120 * 215.39434 * 17 16 14 19 19 C 1.38119 * 120.05419 * 179.72363 * 18 17 16 20 20 C 1.38200 * 120.13656 * 0.55797 * 19 18 17 21 21 C 1.38857 * 120.08885 * 359.72104 * 20 19 18 22 22 N 1.40261 * 120.03173 * 179.97438 * 21 20 19 23 23 C 1.35072 * 127.38577 * 0.02648 * 22 21 20 24 24 N 1.30735 * 107.27043 * 179.97438 * 23 22 21 25 25 N 1.28423 * 110.64960 * 359.97438 * 24 23 22 26 26 N 1.28946 * 110.20093 * 359.75042 * 25 24 23 27 27 C 1.38710 * 119.94214 * 0.02562 * 21 20 19 28 28 H 0.96997 * 119.99836 * 178.72077 * 1 2 3 29 29 H 1.07998 * 122.77949 * 359.97438 * 10 9 7 30 30 H 1.07995 * 124.31563 * 180.24318 * 11 10 9 31 31 H 0.97004 * 119.99598 * 354.99599 * 16 14 13 32 32 H 1.08000 * 119.97321 * 0.02562 * 18 17 16 33 33 H 1.07996 * 119.93410 * 180.27924 * 19 18 17 34 34 H 1.08001 * 119.95876 * 179.74545 * 20 19 18 35 35 H 1.07989 * 126.36577 * 359.92351 * 23 22 21 36 36 H 1.07994 * 120.06567 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2754 2.7464 -0.0006 5 1 3.0940 1.6965 1.2126 6 1 3.0942 1.6963 -1.2124 7 6 2.0080 -1.2151 0.0005 8 1 3.0319 -1.2477 -0.3412 9 6 1.3782 -2.3898 0.4455 10 6 0.2677 -2.4035 1.3652 11 6 -0.1885 -3.6155 1.6573 12 16 0.7281 -4.8608 0.8276 13 6 1.7625 -3.6723 0.0508 14 6 2.8571 -3.9793 -0.8681 15 8 3.5151 -3.0772 -1.3543 16 7 3.1382 -5.2606 -1.1772 17 6 4.1144 -5.5505 -2.1347 18 6 3.9553 -6.6401 -2.9826 19 6 4.9171 -6.9234 -3.9326 20 6 6.0453 -6.1319 -4.0354 21 6 6.2129 -5.0452 -3.1873 22 7 7.3586 -4.2430 -3.2923 23 6 8.3855 -4.3889 -4.1576 24 7 9.2385 -3.4288 -3.9130 25 7 8.8207 -2.6856 -2.9526 26 7 7.6813 -3.1106 -2.5239 27 6 5.2467 -4.7544 -2.2355 28 1 -0.4850 -0.8398 -0.0188 29 1 -0.1599 -1.5023 1.7792 30 1 -1.0154 -3.8105 2.3240 31 1 2.6630 -5.9816 -0.7353 32 1 3.0767 -7.2629 -2.9019 33 1 4.7893 -7.7679 -4.5936 34 1 6.7974 -6.3585 -4.7766 35 1 8.4840 -5.1564 -4.9108 36 1 5.3752 -3.9100 -1.5746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353753674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:01 Heat of formation + Delta-G solvation = 137.535687 kcal Electronic energy + Delta-G solvation = -25610.382098 eV Core-core repulsion = 21802.813182 eV Total energy + Delta-G solvation = -3807.568916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.20627 -40.13826 -38.27564 -36.68064 -35.31524 -33.70993 -33.21359 -32.34764 -30.53390 -29.82782 -28.85531 -26.06659 -25.15383 -23.93402 -22.86459 -22.07012 -21.80148 -20.31497 -19.24880 -18.81501 -17.89107 -16.70506 -16.61227 -16.45497 -16.18087 -15.46035 -15.29649 -14.70214 -14.35244 -14.06683 -13.93869 -13.64266 -13.34351 -13.23387 -13.10476 -12.61584 -12.50825 -12.15344 -11.93598 -11.80338 -11.58210 -11.53275 -11.20245 -11.05175 -10.88520 -10.53831 -10.51858 -10.25813 -10.04747 -9.89032 -9.30207 -8.90268 -8.62978 -8.08725 -7.91120 -7.54614 -7.51149 -4.79495 0.30935 1.20714 1.60076 1.73689 1.87009 2.21973 2.76760 2.96576 3.04581 3.26080 3.35563 3.43805 3.53599 3.65010 3.79653 3.97126 4.15401 4.22959 4.74405 4.79701 4.84821 4.90814 5.02160 5.25254 5.32768 5.39669 5.64837 5.73296 6.05074 6.10076 6.12060 6.21971 6.38546 6.54477 6.64888 6.80281 6.99564 7.07422 7.15651 7.54878 7.73953 8.03591 8.24488 8.36006 8.49164 9.17179 9.58065 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010474 B = 0.003846 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.638560 B = 7278.996115 C = 9553.376514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.028 3.972 3 Si 1.073 2.927 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.409 4.409 8 H 0.113 0.887 9 C 0.111 3.889 10 C -0.142 4.142 11 C -0.179 4.179 12 S -0.038 6.038 13 C -0.442 4.442 14 C 0.591 3.409 15 O -0.541 6.541 16 N -0.688 5.688 17 C 0.200 3.800 18 C -0.151 4.151 19 C -0.076 4.076 20 C -0.155 4.155 21 C 0.141 3.859 22 N -0.318 5.318 23 C 0.218 3.782 24 N -0.336 5.336 25 N -0.044 5.044 26 N -0.060 5.060 27 C -0.110 4.110 28 H 0.302 0.698 29 H 0.132 0.868 30 H 0.143 0.857 31 H 0.405 0.595 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.237 0.763 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -12.264 -5.438 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.198 4.198 3 Si 0.894 3.106 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.131 0.869 9 C 0.100 3.900 10 C -0.176 4.176 11 C -0.313 4.313 12 S 0.217 5.783 13 C -0.560 4.560 14 C 0.392 3.608 15 O -0.423 6.423 16 N -0.332 5.332 17 C 0.101 3.899 18 C -0.173 4.173 19 C -0.095 4.095 20 C -0.177 4.177 21 C 0.048 3.952 22 N -0.108 5.108 23 C -0.079 4.079 24 N -0.185 5.185 25 N -0.038 5.038 26 N -0.045 5.045 27 C -0.133 4.133 28 H 0.117 0.883 29 H 0.150 0.850 30 H 0.161 0.839 31 H 0.241 0.759 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.253 0.747 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.454 -10.282 -5.055 12.689 hybrid contribution -0.824 -1.537 -0.074 1.745 sum 4.630 -11.819 -5.128 13.690 Atomic orbital electron populations 1.70485 1.08394 1.34701 1.25140 1.27650 0.95632 1.05480 0.91032 0.83504 0.75644 0.72419 0.79077 1.19422 1.19268 1.19187 1.21125 1.02381 0.91308 1.29021 0.86901 1.17878 0.89639 0.92224 0.90209 1.21572 0.98699 0.97075 1.00208 1.24939 1.04412 0.96424 1.05537 1.82735 1.32434 1.12420 1.50758 1.22144 1.15219 0.94737 1.23911 1.16943 0.83131 0.80237 0.80516 1.90705 1.51784 1.44930 1.54861 1.43691 1.38755 1.09723 1.41030 1.17571 0.87929 0.94072 0.90280 1.21152 1.00762 0.99517 0.95877 1.20671 0.92411 0.98844 0.97566 1.20657 1.00683 0.95543 1.00854 1.17400 0.85476 0.92205 1.00096 1.49088 1.16208 1.20958 1.24583 1.27343 0.84576 0.99990 0.95945 1.74433 1.26100 1.04841 1.13124 1.78097 1.03093 1.18125 1.04532 1.82881 1.10520 0.96233 1.14852 1.21224 0.90573 1.02242 0.99225 0.88342 0.85036 0.83895 0.75939 0.84894 0.84440 0.85191 0.74668 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.51 12.65 55.57 0.70 -17.81 16 2 C 0.03 0.66 5.22 -17.28 -0.09 0.57 16 3 Si 1.07 20.86 29.99 -169.99 -5.10 15.77 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.41 -10.56 8.43 -37.94 -0.32 -10.88 16 8 H 0.11 3.10 6.15 -52.49 -0.32 2.78 16 9 C 0.11 2.77 5.41 -106.20 -0.57 2.20 16 10 C -0.14 -3.16 8.16 -39.12 -0.32 -3.48 16 11 C -0.18 -3.50 11.07 28.86 0.32 -3.18 16 12 S -0.04 -0.74 22.26 -107.50 -2.39 -3.14 16 13 C -0.44 -10.42 6.50 -35.90 -0.23 -10.65 16 14 C 0.59 13.56 7.60 -13.07 -0.10 13.46 16 15 O -0.54 -13.94 11.92 5.11 0.06 -13.88 16 16 N -0.69 -12.38 5.32 -11.20 -0.06 -12.44 16 17 C 0.20 3.19 6.29 -83.76 -0.53 2.66 16 18 C -0.15 -1.77 9.96 -39.35 -0.39 -2.17 16 19 C -0.08 -0.70 10.03 -39.64 -0.40 -1.10 16 20 C -0.16 -1.53 9.49 -39.37 -0.37 -1.90 16 21 C 0.14 1.97 6.70 -83.60 -0.56 1.41 16 22 N -0.32 -4.62 3.85 -11.76 -0.05 -4.67 16 23 C 0.22 2.45 12.16 -90.15 -1.10 1.35 16 24 N -0.34 -4.91 12.15 29.64 0.36 -4.55 16 25 N -0.04 -0.76 13.39 60.35 0.81 0.05 16 26 N -0.06 -1.08 13.33 60.35 0.80 -0.27 16 27 C -0.11 -1.89 8.34 -39.20 -0.33 -2.22 16 28 H 0.30 7.36 6.05 -40.82 -0.25 7.11 16 29 H 0.13 2.86 6.81 -52.49 -0.36 2.51 16 30 H 0.14 2.31 8.06 -52.49 -0.42 1.88 16 31 H 0.40 6.33 7.91 -40.82 -0.32 6.01 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.13 0.76 6.87 -52.49 -0.36 0.40 16 35 H 0.24 1.16 7.19 -52.49 -0.38 0.78 16 36 H 0.16 3.39 5.96 -52.49 -0.31 3.08 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -30.97 332.65 -7.20 -38.17 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -2.36 Total: 11.69 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -4.99 Total: -13.94 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 2.57 Total: -39.69 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.06 Total: -13.88 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.10 Total: 15.77 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -2.39 Total: -3.14 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.97 -7.20 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353753674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.704 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds