Wall clock time and date at job start Sat Apr 11 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86794 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47332 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47471 * 119.99495 * 3 2 1 6 6 H 1.48500 * 109.47424 * 239.99398 * 3 2 1 7 7 C 1.40313 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00406 * 158.56467 * 7 2 1 9 9 C 1.40514 * 119.99894 * 338.57716 * 7 2 1 10 10 C 1.44199 * 123.71766 * 335.24418 * 9 7 2 11 11 C 1.32755 * 114.43241 * 179.76202 * 10 9 7 12 12 S 1.75475 * 111.37086 * 0.49821 * 11 10 9 13 13 C 1.39580 * 123.72173 * 155.54369 * 9 7 2 14 14 C 1.46176 * 125.23259 * 359.97438 * 13 9 7 15 15 O 1.21785 * 119.99952 * 359.97438 * 14 13 9 16 16 N 1.34776 * 120.00444 * 179.97438 * 14 13 9 17 17 C 1.39769 * 119.99936 * 174.99125 * 16 14 13 18 18 C 1.38983 * 120.04120 * 215.39434 * 17 16 14 19 19 C 1.38119 * 120.05419 * 179.72363 * 18 17 16 20 20 C 1.38200 * 120.13656 * 0.55797 * 19 18 17 21 21 C 1.38857 * 120.08885 * 359.72104 * 20 19 18 22 22 N 1.40261 * 120.03173 * 179.97438 * 21 20 19 23 23 C 1.35072 * 127.38577 * 0.02648 * 22 21 20 24 24 N 1.30735 * 107.27043 * 179.97438 * 23 22 21 25 25 N 1.28423 * 110.64960 * 359.97438 * 24 23 22 26 26 N 1.28946 * 110.20093 * 359.75042 * 25 24 23 27 27 C 1.38710 * 119.94214 * 0.02562 * 21 20 19 28 28 H 0.96997 * 119.99836 * 178.72077 * 1 2 3 29 29 H 1.07998 * 122.77949 * 359.97438 * 10 9 7 30 30 H 1.07995 * 124.31563 * 180.24318 * 11 10 9 31 31 H 0.97004 * 119.99598 * 354.99599 * 16 14 13 32 32 H 1.08000 * 119.97321 * 0.02562 * 18 17 16 33 33 H 1.07996 * 119.93410 * 180.27924 * 19 18 17 34 34 H 1.08001 * 119.95876 * 179.74545 * 20 19 18 35 35 H 1.07989 * 126.36577 * 359.92351 * 23 22 21 36 36 H 1.07994 * 120.06567 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2754 2.7464 -0.0006 5 1 3.0940 1.6965 1.2126 6 1 3.0942 1.6963 -1.2124 7 6 2.0080 -1.2151 0.0005 8 1 3.0319 -1.2477 -0.3412 9 6 1.3782 -2.3898 0.4455 10 6 0.2677 -2.4035 1.3652 11 6 -0.1885 -3.6155 1.6573 12 16 0.7281 -4.8608 0.8276 13 6 1.7625 -3.6723 0.0508 14 6 2.8571 -3.9793 -0.8681 15 8 3.5151 -3.0772 -1.3543 16 7 3.1382 -5.2606 -1.1772 17 6 4.1144 -5.5505 -2.1347 18 6 3.9553 -6.6401 -2.9826 19 6 4.9171 -6.9234 -3.9326 20 6 6.0453 -6.1319 -4.0354 21 6 6.2129 -5.0452 -3.1873 22 7 7.3586 -4.2430 -3.2923 23 6 8.3855 -4.3889 -4.1576 24 7 9.2385 -3.4288 -3.9130 25 7 8.8207 -2.6856 -2.9526 26 7 7.6813 -3.1106 -2.5239 27 6 5.2467 -4.7544 -2.2355 28 1 -0.4850 -0.8398 -0.0188 29 1 -0.1599 -1.5023 1.7792 30 1 -1.0154 -3.8105 2.3240 31 1 2.6630 -5.9816 -0.7353 32 1 3.0767 -7.2629 -2.9019 33 1 4.7893 -7.7679 -4.5936 34 1 6.7974 -6.3585 -4.7766 35 1 8.4840 -5.1564 -4.9108 36 1 5.3752 -3.9100 -1.5746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353753674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:01 Heat of formation + Delta-G solvation = 117.226326 kcal Electronic energy + Delta-G solvation = -25611.262778 eV Core-core repulsion = 21802.813182 eV Total energy + Delta-G solvation = -3808.449596 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.31961 -41.42293 -39.71775 -38.36039 -36.59640 -35.05861 -34.96443 -33.47875 -31.70838 -31.14310 -30.33131 -27.77697 -26.24145 -25.17747 -24.38143 -23.22664 -23.05863 -21.71688 -20.99346 -20.17101 -19.30962 -18.28033 -17.74153 -17.56407 -17.22173 -16.77213 -16.55930 -16.23577 -15.96718 -15.62684 -15.35549 -15.01674 -14.72398 -14.43532 -14.29430 -14.19498 -13.84251 -13.74797 -13.35342 -12.90941 -12.85982 -12.81615 -12.67506 -12.55568 -12.17077 -12.09020 -11.94672 -11.68978 -11.60234 -11.28994 -11.03847 -10.54599 -9.81728 -9.75859 -9.41772 -9.25852 -9.12266 -6.64265 -0.71541 0.00818 0.29468 0.55883 0.73827 1.13963 1.15973 1.31544 1.40912 1.56547 1.72603 1.80630 2.16794 2.20466 2.31058 2.68133 3.03470 3.07926 3.33121 3.75598 3.86865 4.01739 4.07720 4.13943 4.21420 4.35125 4.38540 4.52251 4.69289 4.83868 5.08911 5.12591 5.22390 5.24579 5.24715 5.27391 5.33593 5.56590 5.77189 5.81509 5.93524 6.37789 6.46849 6.70143 7.22706 7.47176 7.73658 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.010474 B = 0.003846 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.638560 B = 7278.996115 C = 9553.376514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.005 3.995 3 Si 1.113 2.887 4 H -0.252 1.252 5 H -0.258 1.258 6 H -0.275 1.275 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.091 3.909 10 C -0.175 4.175 11 C -0.161 4.161 12 S 0.037 5.963 13 C -0.475 4.475 14 C 0.584 3.416 15 O -0.580 6.580 16 N -0.678 5.678 17 C 0.159 3.841 18 C -0.136 4.136 19 C -0.058 4.058 20 C -0.124 4.124 21 C 0.123 3.877 22 N -0.323 5.323 23 C 0.245 3.755 24 N -0.357 5.357 25 N -0.066 5.066 26 N -0.117 5.117 27 C -0.146 4.146 28 H 0.293 0.707 29 H 0.129 0.871 30 H 0.187 0.813 31 H 0.415 0.585 32 H 0.161 0.839 33 H 0.195 0.805 34 H 0.188 0.812 35 H 0.306 0.694 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -16.800 -7.731 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.216 4.216 3 Si 0.929 3.071 4 H -0.175 1.175 5 H -0.182 1.182 6 H -0.200 1.200 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.081 3.919 10 C -0.208 4.208 11 C -0.296 4.296 12 S 0.293 5.707 13 C -0.593 4.593 14 C 0.384 3.616 15 O -0.465 6.465 16 N -0.322 5.322 17 C 0.063 3.937 18 C -0.157 4.157 19 C -0.076 4.076 20 C -0.145 4.145 21 C 0.030 3.970 22 N -0.113 5.113 23 C -0.050 4.050 24 N -0.207 5.207 25 N -0.061 5.061 26 N -0.103 5.103 27 C -0.169 4.169 28 H 0.107 0.893 29 H 0.147 0.853 30 H 0.204 0.796 31 H 0.252 0.748 32 H 0.178 0.822 33 H 0.212 0.788 34 H 0.205 0.795 35 H 0.321 0.679 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.271 -14.894 -7.352 17.426 hybrid contribution -0.664 -0.562 0.483 0.995 sum 4.607 -15.457 -6.869 17.530 Atomic orbital electron populations 1.70556 1.08398 1.33974 1.27206 1.28624 0.95809 1.07295 0.89873 0.83036 0.74985 0.70022 0.79025 1.17530 1.18216 1.20042 1.20990 1.01612 0.93367 1.32912 0.90317 1.18343 0.90652 0.92644 0.90305 1.21434 0.99541 0.98324 1.01485 1.25516 1.04239 0.95511 1.04336 1.82291 1.29909 1.09805 1.48665 1.22792 1.16006 0.96484 1.24026 1.17146 0.82707 0.81606 0.80187 1.90697 1.52894 1.46788 1.56077 1.43266 1.39280 1.08004 1.41678 1.17881 0.87480 0.96458 0.91901 1.21555 1.02275 0.97289 0.94613 1.21369 0.90495 0.99351 0.96426 1.21374 1.01651 0.92267 0.99218 1.17710 0.84819 0.93679 1.00743 1.49156 1.17120 1.20246 1.24769 1.28610 0.82001 0.99440 0.94916 1.74341 1.27456 1.05894 1.13028 1.78076 1.03247 1.19177 1.05565 1.82879 1.11342 0.98776 1.17281 1.20932 0.93236 1.01996 1.00775 0.89301 0.85286 0.79569 0.74751 0.82164 0.78818 0.79501 0.67916 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.68 12.65 21.89 0.28 -39.40 16 2 C 0.00 0.25 5.22 85.38 0.45 0.70 16 3 Si 1.11 44.97 29.99 68.60 2.06 47.03 16 4 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.46 -25.89 8.43 23.33 0.20 -25.69 16 8 H 0.08 4.87 6.15 -2.91 -0.02 4.85 16 9 C 0.09 4.84 5.41 -20.89 -0.11 4.73 16 10 C -0.17 -7.97 8.16 22.61 0.18 -7.78 16 11 C -0.16 -6.09 11.07 66.64 0.74 -5.35 16 12 S 0.04 1.38 22.26 -56.49 -1.26 0.13 16 13 C -0.47 -23.36 6.50 24.66 0.16 -23.20 16 14 C 0.58 28.63 7.60 86.30 0.66 29.28 16 15 O -0.58 -33.05 11.92 -4.62 -0.06 -33.11 16 16 N -0.68 -25.07 5.32 -307.52 -1.64 -26.70 16 17 C 0.16 5.08 6.29 38.18 0.24 5.32 16 18 C -0.14 -2.67 9.96 22.42 0.22 -2.45 16 19 C -0.06 -0.69 10.03 22.23 0.22 -0.46 16 20 C -0.12 -1.72 9.49 22.41 0.21 -1.51 16 21 C 0.12 3.27 6.70 38.05 0.25 3.53 16 22 N -0.32 -9.22 3.85 -191.12 -0.74 -9.95 16 23 C 0.25 4.77 12.16 180.18 2.19 6.96 16 24 N -0.36 -10.18 12.15 -60.14 -0.73 -10.91 16 25 N -0.07 -2.40 13.39 37.02 0.50 -1.90 16 26 N -0.12 -4.54 13.33 37.02 0.49 -4.05 16 27 C -0.15 -5.33 8.34 22.51 0.19 -5.14 16 28 H 0.29 15.08 6.05 -92.71 -0.56 14.52 16 29 H 0.13 5.86 6.81 -2.91 -0.02 5.84 16 30 H 0.19 5.33 8.06 -2.91 -0.02 5.31 16 31 H 0.41 12.83 7.91 -92.71 -0.73 12.09 16 32 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.19 0.35 8.06 -2.91 -0.02 0.33 16 34 H 0.19 0.48 6.87 -2.91 -0.02 0.46 16 35 H 0.31 0.84 7.19 -2.92 -0.02 0.82 16 36 H 0.11 5.11 5.96 -2.91 -0.02 5.09 16 Total: -1.00 -82.17 332.65 5.37 -76.80 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.66 Total: 23.15 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 5.80 Total: -21.07 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -1.84 Total: -92.92 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.06 Total: -33.11 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.06 Total: 47.03 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.26 Total: 0.13 kcal Total: -82.17 5.37 -76.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353753674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.025 kcal (2) G-P(sol) polarization free energy of solvation -82.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds