Wall clock time and date at job start Sat Apr 11 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00233 * 2 1 4 4 H 1.48510 * 109.47082 * 270.00186 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99847 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00090 * 3 2 1 7 7 C 1.38798 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 179.72124 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00309 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47359 * 180.02562 * 14 13 11 16 16 H 1.08992 * 112.74229 * 56.24006 * 15 14 13 17 17 C 1.53503 * 113.46691 * 187.06315 * 15 14 13 18 18 C 1.53505 * 83.34283 * 140.84610 * 17 15 14 19 19 N 1.47065 * 87.98448 * 333.93319 * 18 17 15 20 20 C 1.34771 * 136.05161 * 207.15991 * 19 18 17 21 21 O 1.21692 * 120.00055 * 179.97438 * 20 19 18 22 22 C 1.46686 * 120.00456 * 359.94759 * 20 19 18 23 23 C 1.35661 * 126.13240 * 179.97438 * 22 20 19 24 24 N 1.30935 * 114.19094 * 179.97438 * 23 22 20 25 25 C 1.29430 * 117.36545 * 0.02562 * 24 23 22 26 26 S 1.70956 * 110.39026 * 359.72276 * 25 24 23 27 27 H 0.97000 * 119.99427 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 29 29 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 30 30 H 0.97005 * 120.00069 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47102 * 300.00443 * 14 13 11 32 32 H 1.09006 * 109.46942 * 60.00242 * 14 13 11 33 33 H 1.09002 * 114.20352 * 254.43300 * 17 15 14 34 34 H 1.08996 * 114.20855 * 27.25701 * 17 15 14 35 35 H 1.08997 * 113.46120 * 219.14826 * 18 17 15 36 36 H 1.08996 * 113.51741 * 88.72299 * 18 17 15 37 37 H 1.08006 * 122.90113 * 359.96923 * 23 22 20 38 38 H 1.08006 * 124.80605 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0069 10 6 4.0865 -2.9846 -0.0117 11 6 5.5729 -3.2326 -0.0178 12 8 6.3440 -2.2965 -0.0183 13 7 6.0456 -4.4947 -0.0216 14 6 7.4905 -4.7359 -0.0270 15 6 7.7562 -6.2426 -0.0311 16 1 7.2764 -6.7527 -0.8663 17 6 9.2390 -6.6024 0.1362 18 6 8.6817 -7.7324 1.0131 19 7 7.5072 -6.8848 1.2683 20 6 6.6019 -6.7537 2.2579 21 8 5.7151 -5.9254 2.1656 22 6 6.6848 -7.6099 3.4461 23 6 5.8446 -7.5841 4.5109 24 7 6.1357 -8.4540 5.4453 25 6 7.1635 -9.2159 5.2495 26 16 7.8895 -8.8612 3.7429 27 1 -0.4849 0.8401 -0.0004 28 1 3.6473 -3.4334 0.8793 29 1 3.6399 -3.4299 -0.9007 30 1 5.4289 -5.2436 -0.0208 31 1 7.9305 -4.2873 -0.9176 32 1 7.9365 -4.2904 0.8624 33 1 9.7221 -6.9439 -0.7792 34 1 9.8205 -5.8589 0.6814 35 1 9.2795 -7.9255 1.9038 36 1 8.4492 -8.6403 0.4567 37 1 5.0079 -6.9047 4.5817 38 1 7.5108 -9.9717 5.9384 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358586551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:12 Heat of formation + Delta-G solvation = 24.747413 kcal Electronic energy + Delta-G solvation = -24109.837834 eV Core-core repulsion = 20400.529251 eV Total energy + Delta-G solvation = -3709.308583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15736 -40.10866 -38.86921 -38.00925 -34.35242 -32.35552 -31.69730 -30.22484 -29.82917 -27.70372 -26.41135 -25.52429 -23.61703 -23.26819 -20.92317 -20.30006 -19.96829 -18.71897 -17.80027 -17.00423 -16.89006 -16.68230 -16.10008 -15.51859 -15.39762 -14.98034 -14.87777 -14.61236 -14.44832 -14.16512 -13.92610 -13.73899 -13.27478 -13.17194 -12.86897 -12.71857 -12.50222 -12.23399 -11.94929 -11.71973 -11.35124 -11.17077 -10.93748 -10.49096 -10.45402 -10.14258 -10.02514 -9.77649 -9.57899 -9.35461 -9.21941 -8.92682 -8.76549 -8.39316 -6.80941 -6.20872 -3.91062 -0.21195 0.70462 1.08761 2.04990 2.17308 2.80697 2.90134 3.17416 3.38037 3.41077 3.57563 3.65469 3.76701 3.87700 4.01562 4.33493 4.40903 4.51855 4.63194 4.67373 4.75175 4.77226 4.85951 4.88898 5.08708 5.16750 5.18181 5.41306 5.47252 5.63782 5.68630 5.82487 5.95007 6.21184 6.69069 7.07896 7.19442 7.66737 7.82906 8.02701 8.50852 8.68235 9.25631 10.88597 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.002582 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.411208 B =10839.738771 C =12130.867910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.094 3.906 3 Si 0.857 3.143 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.518 4.518 8 H 0.088 0.912 9 S -0.145 6.145 10 C -0.120 4.120 11 C 0.536 3.464 12 O -0.529 6.529 13 N -0.721 5.721 14 C 0.121 3.879 15 C 0.125 3.875 16 H 0.105 0.895 17 C -0.141 4.141 18 C 0.091 3.909 19 N -0.645 5.645 20 C 0.620 3.380 21 O -0.498 6.498 22 C -0.280 4.280 23 C 0.119 3.881 24 N -0.474 5.474 25 C 0.026 3.974 26 S 0.164 5.836 27 H 0.270 0.730 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.402 0.598 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.192 0.808 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.194 -25.800 4.113 34.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.665 4.665 8 H 0.106 0.894 9 S 0.082 5.918 10 C -0.270 4.270 11 C 0.322 3.678 12 O -0.405 6.405 13 N -0.376 5.376 14 C -0.005 4.005 15 C 0.022 3.978 16 H 0.123 0.877 17 C -0.179 4.179 18 C -0.032 4.032 19 N -0.382 5.382 20 C 0.408 3.592 21 O -0.374 6.374 22 C -0.404 4.404 23 C -0.039 4.039 24 N -0.187 5.187 25 C -0.268 4.268 26 S 0.417 5.583 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.237 0.763 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.208 0.792 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 24.230 -24.181 4.254 34.495 hybrid contribution -1.839 -0.382 0.271 1.897 sum 22.391 -24.563 4.524 33.543 Atomic orbital electron populations 1.69949 1.05913 1.27642 1.48457 1.24717 0.94449 0.98942 0.93296 0.86723 0.81942 0.83266 0.79851 1.19263 1.20026 1.15910 1.22340 0.88387 0.97504 1.58305 0.89440 1.84699 1.09137 1.00596 1.97416 1.23234 0.94279 1.03774 1.05746 1.20168 0.90492 0.82201 0.74954 1.90671 1.58804 1.42350 1.48654 1.45771 1.06649 1.08252 1.76903 1.21440 0.83229 0.92877 1.02919 1.23054 0.94917 0.94234 0.85548 0.87719 1.23446 0.94914 0.98315 1.01230 1.23130 0.85127 0.95546 0.99417 1.49638 1.29838 1.39829 1.18939 1.16185 0.80355 0.82303 0.80386 1.90951 1.33131 1.34736 1.78542 1.25719 1.04590 1.06960 1.03152 1.22375 0.99161 0.95812 0.86506 1.66309 1.15913 1.06311 1.30149 1.28968 0.95216 1.02371 1.00291 1.83920 1.29215 1.28806 1.16311 0.92039 0.88338 0.88842 0.76313 0.90170 0.91272 0.88193 0.87890 0.90045 0.88840 0.79154 0.77884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.57 13.97 55.49 0.78 -26.79 16 2 C 0.09 2.86 5.50 -17.43 -0.10 2.77 16 3 Si 0.86 22.63 27.73 -169.99 -4.71 17.92 16 4 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.24 -6.22 6.74 56.52 0.38 -5.84 16 7 C -0.52 -15.66 10.04 30.94 0.31 -15.35 16 8 H 0.09 2.76 8.03 -52.49 -0.42 2.34 16 9 S -0.14 -3.91 18.55 -107.50 -1.99 -5.90 16 10 C -0.12 -2.59 6.16 36.01 0.22 -2.37 16 11 C 0.54 10.63 7.85 -10.99 -0.09 10.54 16 12 O -0.53 -12.26 15.86 5.56 0.09 -12.17 16 13 N -0.72 -10.70 4.17 -60.30 -0.25 -10.95 16 14 C 0.12 1.37 5.35 -4.05 -0.02 1.35 16 15 C 0.13 0.88 4.07 -72.38 -0.29 0.59 16 16 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 17 C -0.14 -0.51 8.03 -26.21 -0.21 -0.72 16 18 C 0.09 0.36 7.28 -8.49 -0.06 0.30 16 19 N -0.65 -5.28 3.57 -178.97 -0.64 -5.92 16 20 C 0.62 7.09 7.94 -12.85 -0.10 6.99 16 21 O -0.50 -7.65 14.75 5.20 0.08 -7.57 16 22 C -0.28 -2.71 6.48 -37.09 -0.24 -2.95 16 23 C 0.12 1.25 11.09 -18.86 -0.21 1.04 16 24 N -0.47 -4.64 10.51 -15.38 -0.16 -4.80 16 25 C 0.03 0.16 12.22 51.75 0.63 0.80 16 26 S 0.16 0.90 20.14 -107.50 -2.16 -1.27 16 27 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 28 H 0.10 2.11 8.14 -51.92 -0.42 1.69 16 29 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 30 H 0.40 5.49 7.35 -40.82 -0.30 5.19 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 34 H 0.10 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.08 0.26 6.44 -51.93 -0.33 -0.07 16 36 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.19 2.05 8.06 -52.48 -0.42 1.62 16 38 H 0.20 0.50 8.06 -52.48 -0.42 0.08 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -39.45 353.57 -8.25 -47.70 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.44 Total: 1.44 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -0.16 Total: 2.99 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.28 Total: -48.46 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.16 Total: -19.74 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.92 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -4.16 Total: -7.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.45 -8.25 -47.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358586551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.445 kcal (2) G-P(sol) polarization free energy of solvation -39.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds