Wall clock time and date at job start Sat Apr 11 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00113 * 2 1 4 4 H 1.48495 * 109.47134 * 275.41177 * 3 2 1 5 5 H 1.48501 * 109.46751 * 35.41233 * 3 2 1 6 6 H 1.48503 * 109.46965 * 155.40908 * 3 2 1 7 7 C 1.39943 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00095 * 341.72405 * 7 2 1 9 9 C 1.41393 * 119.99896 * 161.73027 * 7 2 1 10 10 C 1.40742 * 120.23870 * 330.22189 * 9 7 2 11 11 C 1.37602 * 119.77337 * 179.97438 * 10 9 7 12 12 C 1.38640 * 120.26260 * 0.25180 * 11 10 9 13 13 S 1.76195 * 119.75552 * 179.74373 * 12 11 10 14 14 O 1.42102 * 106.40481 * 228.54478 * 13 12 11 15 15 O 1.42099 * 106.40438 * 1.46643 * 13 12 11 16 16 N 1.65604 * 107.21834 * 115.00659 * 13 12 11 17 17 C 1.45321 * 118.82790 * 269.73578 * 16 13 12 18 18 C 1.51249 * 112.26489 * 235.82747 * 17 16 13 19 19 C 1.51275 * 112.98889 * 318.49162 * 18 17 16 20 20 H 1.08994 * 113.85854 * 164.37533 * 19 18 17 21 21 C 1.52114 * 120.85250 * 308.47565 * 19 18 17 22 22 C 1.51974 * 120.67344 * 20.59673 * 19 18 17 23 23 H 1.09002 * 116.92288 * 142.02763 * 22 19 18 24 24 C 1.45539 * 118.83207 * 89.99487 * 16 13 12 25 25 C 1.38731 * 120.48292 * 359.49157 * 12 11 10 26 26 Cl 1.73607 * 119.88642 * 180.23010 * 25 12 11 27 27 C 1.37756 * 120.22470 * 0.50912 * 25 12 11 28 28 H 0.97005 * 119.99643 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.11237 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.86730 * 179.97438 * 11 10 9 31 31 H 1.09002 * 108.97183 * 356.53579 * 17 16 13 32 32 H 1.09001 * 108.97653 * 115.23663 * 17 16 13 33 33 H 1.08994 * 108.89081 * 197.50101 * 18 17 16 34 34 H 1.09000 * 108.65044 * 79.31272 * 18 17 16 35 35 H 1.08999 * 117.54549 * 2.91626 * 21 19 18 36 36 H 1.08999 * 117.54367 * 217.64802 * 21 19 18 37 37 H 1.09001 * 109.21282 * 260.81928 * 24 16 13 38 38 H 1.09001 * 109.21180 * 20.18431 * 24 16 13 39 39 H 1.07997 * 120.13324 * 179.71949 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5923 1.4098 0.5826 7 6 2.0079 -1.2120 -0.0005 8 1 1.5088 -2.1238 0.2924 9 6 3.3684 -1.2427 -0.3844 10 6 3.8634 -0.3103 -1.3153 11 6 5.1892 -0.3486 -1.6817 12 6 6.0361 -1.3042 -1.1416 13 16 7.7298 -1.3453 -1.6253 14 8 8.0212 -2.6972 -1.9520 15 8 7.9137 -0.2690 -2.5348 16 7 8.6315 -0.9835 -0.2843 17 6 8.9632 0.4059 -0.0168 18 6 10.4541 0.6243 0.1135 19 6 11.1446 -0.4675 0.9009 20 1 12.2279 -0.4793 0.7815 21 6 10.6354 -0.8805 2.2734 22 6 10.4937 -1.8301 1.0717 23 1 11.1516 -2.6987 1.0403 24 6 9.0685 -2.0688 0.5814 25 6 5.5608 -2.2251 -0.2193 26 17 6.6362 -3.4113 0.4517 27 6 4.2371 -2.2050 0.1617 28 1 -0.4850 0.8401 0.0004 29 1 3.2051 0.4331 -1.7399 30 1 5.5706 0.3659 -2.3962 31 1 8.5860 1.0235 -0.8319 32 1 8.4808 0.7131 0.9111 33 1 10.6289 1.5789 0.6096 34 1 10.8890 0.6654 -0.8851 35 1 9.7313 -0.3962 2.6424 36 1 11.3771 -1.1336 3.0310 37 1 8.3999 -2.1342 1.4398 38 1 9.0328 -3.0065 0.0268 39 1 3.8677 -2.9254 0.8765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364005474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:39 Heat of formation + Delta-G solvation = -37.378345 kcal Electronic energy + Delta-G solvation = -25948.179479 eV Core-core repulsion = 22201.840464 eV Total energy + Delta-G solvation = -3746.339015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.45061 -38.16097 -36.79617 -35.94626 -35.27363 -34.43796 -34.08861 -31.56700 -31.01926 -29.88221 -26.15656 -25.94606 -24.13125 -22.07418 -21.59886 -21.39024 -19.50278 -18.13949 -17.94333 -17.61288 -16.87909 -15.93020 -15.62875 -15.57126 -14.82164 -14.63663 -14.48708 -14.15957 -13.98590 -13.34860 -13.18768 -13.04222 -12.95354 -12.84536 -12.48774 -12.12636 -11.88608 -11.65098 -11.48947 -11.39323 -11.31599 -11.20392 -11.07809 -10.97633 -10.75799 -10.56143 -10.44092 -10.10384 -10.02334 -9.82998 -9.76908 -9.50821 -8.71609 -8.34254 -7.95311 -7.48490 -5.09373 1.00342 1.78333 2.27211 2.67277 2.82348 2.94411 3.01617 3.37848 3.61832 3.70256 3.93387 4.30980 4.60487 4.71703 4.77340 4.83681 4.92507 5.00135 5.11014 5.31522 5.45574 5.61035 5.67954 5.72464 5.79420 5.84992 5.92887 6.05868 6.06409 6.11638 6.12481 6.25855 6.28958 6.38034 6.59268 6.80221 6.89203 6.93835 7.04744 7.37722 7.53252 7.80481 8.10202 8.22425 9.49383 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.004321 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.477187 B = 6478.067016 C = 6803.496515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.080 3.920 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.239 1.239 7 C -0.403 4.403 8 H 0.103 0.897 9 C 0.119 3.881 10 C -0.251 4.251 11 C 0.023 3.977 12 C -0.796 4.796 13 S 2.693 3.307 14 O -0.964 6.964 15 O -0.979 6.979 16 N -0.989 5.989 17 C 0.118 3.882 18 C -0.101 4.101 19 C -0.131 4.131 20 H 0.097 0.903 21 C -0.178 4.178 22 C -0.160 4.160 23 H 0.109 0.891 24 C 0.143 3.857 25 C 0.093 3.907 26 Cl -0.094 7.094 27 C -0.206 4.206 28 H 0.296 0.704 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.839 2.143 4.016 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.428 4.428 8 H 0.121 0.879 9 C 0.114 3.886 10 C -0.271 4.271 11 C 0.003 3.997 12 C -0.889 4.889 13 S 2.790 3.210 14 O -0.955 6.955 15 O -0.970 6.970 16 N -0.825 5.825 17 C -0.008 4.008 18 C -0.140 4.140 19 C -0.150 4.150 20 H 0.115 0.885 21 C -0.215 4.215 22 C -0.180 4.180 23 H 0.127 0.873 24 C 0.018 3.982 25 C 0.065 3.935 26 Cl -0.065 7.065 27 C -0.227 4.227 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.983 1.932 3.289 14.494 hybrid contribution -0.409 0.630 0.650 0.993 sum 13.574 2.561 3.938 14.364 Atomic orbital electron populations 1.69662 1.08393 1.31691 1.29208 1.26420 0.94948 1.02628 0.90521 0.86211 0.81488 0.78565 0.79748 1.18658 1.20950 1.16132 1.19879 0.92654 0.96624 1.33677 0.87909 1.17749 0.92514 0.89865 0.88474 1.21107 0.95785 1.05456 1.04742 1.20222 0.92880 0.92809 0.93830 1.29237 1.23449 1.13648 1.22616 1.01454 0.73869 0.73157 0.72505 1.93526 1.84712 1.35394 1.81822 1.93465 1.86551 1.56329 1.60665 1.56776 1.68171 1.12130 1.45411 1.20589 0.95736 0.81663 1.02826 1.20628 0.95305 0.97675 1.00366 1.21407 0.99020 0.95823 0.98761 0.88491 1.23108 1.03455 1.04080 0.90906 1.22510 0.98126 0.94466 1.02863 0.87251 1.20884 0.92512 0.89829 0.94969 1.19996 0.91024 0.88939 0.93526 1.98329 1.64526 1.58657 1.84975 1.20952 0.90787 1.05199 1.05794 0.89267 0.87062 0.86048 0.88564 0.92016 0.90435 0.91126 0.88528 0.88966 0.91049 0.88362 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.92 13.93 55.55 0.77 -17.15 16 2 C 0.08 1.83 5.40 -17.34 -0.09 1.74 16 3 Si 0.92 18.36 24.52 -169.99 -4.17 14.20 16 4 H -0.26 -5.08 6.70 56.52 0.38 -4.70 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 6 H -0.24 -4.92 6.86 56.52 0.39 -4.53 16 7 C -0.40 -9.64 9.57 -37.74 -0.36 -10.00 16 8 H 0.10 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.12 2.75 5.10 -106.83 -0.55 2.21 16 10 C -0.25 -5.62 7.18 -38.87 -0.28 -5.90 16 11 C 0.02 0.48 9.52 -39.67 -0.38 0.11 16 12 C -0.80 -16.62 5.93 -39.25 -0.23 -16.85 16 13 S 2.69 51.24 5.14 -107.50 -0.55 50.69 16 14 O -0.96 -19.99 14.93 -57.17 -0.85 -20.85 16 15 O -0.98 -19.73 15.32 -57.17 -0.88 -20.61 16 16 N -0.99 -15.43 3.31 -117.18 -0.39 -15.82 16 17 C 0.12 1.57 6.04 -5.56 -0.03 1.54 16 18 C -0.10 -1.10 6.07 -28.48 -0.17 -1.27 16 19 C -0.13 -1.39 5.91 -92.46 -0.55 -1.93 16 20 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.18 -1.79 9.78 -26.76 -0.26 -2.05 16 22 C -0.16 -1.86 6.34 -90.92 -0.58 -2.43 16 23 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 24 C 0.14 2.04 4.42 -4.76 -0.02 2.02 16 25 C 0.09 1.95 6.29 -39.58 -0.25 1.70 16 26 Cl -0.09 -1.68 22.05 -51.86 -1.14 -2.83 16 27 C -0.21 -4.52 9.57 -38.84 -0.37 -4.90 16 28 H 0.30 6.15 8.30 -40.82 -0.34 5.81 16 29 H 0.11 2.40 4.73 -52.49 -0.25 2.15 16 30 H 0.12 2.34 7.31 -52.48 -0.38 1.96 16 31 H 0.10 1.32 6.66 -51.93 -0.35 0.97 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.02 8.13 -51.93 -0.42 0.60 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.00 6.72 -51.93 -0.35 0.65 16 38 H 0.10 1.50 5.66 -51.93 -0.29 1.20 16 39 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -26.78 329.48 -10.96 -37.74 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.60 Total: 5.69 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: -4.12 Total: -36.03 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.39 Total: -32.97 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.73 Total: -41.45 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -4.17 Total: 14.20 kcal Atomic # 16 Polarization: 51.24 SS G_CDS: -0.55 Total: 50.69 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -1.14 Total: -2.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.78 -10.96 -37.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364005474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.366 kcal (2) G-P(sol) polarization free energy of solvation -26.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds