Wall clock time and date at job start Sat Apr 11 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00118 * 2 1 4 4 H 1.48496 * 109.47030 * 269.99867 * 3 2 1 5 5 H 1.48502 * 109.47200 * 29.99597 * 3 2 1 6 6 H 1.48497 * 109.47222 * 149.99627 * 3 2 1 7 7 C 1.39939 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00370 * 192.57677 * 7 2 1 9 9 C 1.41394 * 120.00200 * 12.58057 * 7 2 1 10 10 C 1.40741 * 120.23641 * 30.94835 * 9 7 2 11 11 C 1.37602 * 119.77167 * 180.25756 * 10 9 7 12 12 C 1.38634 * 120.26380 * 359.44492 * 11 10 9 13 13 S 1.76201 * 119.75931 * 180.26081 * 12 11 10 14 14 O 1.42103 * 106.40081 * 226.79354 * 13 12 11 15 15 O 1.42090 * 106.40239 * 359.71566 * 13 12 11 16 16 N 1.65602 * 107.21921 * 113.25725 * 13 12 11 17 17 C 1.45310 * 118.82083 * 276.93323 * 16 13 12 18 18 C 1.51708 * 111.99841 * 235.92918 * 17 16 13 19 19 C 1.52105 * 112.45905 * 318.65837 * 18 17 16 20 20 H 1.08997 * 115.19337 * 229.70871 * 19 18 17 21 21 C 1.53817 * 115.97852 * 89.30785 * 19 18 17 22 22 C 1.51969 * 121.30011 * 20.48476 * 19 18 17 23 23 H 1.09000 * 115.76675 * 210.31681 * 22 19 18 24 24 C 1.45530 * 118.81849 * 96.66540 * 16 13 12 25 25 C 1.38737 * 120.48429 * 0.55734 * 12 11 10 26 26 Cl 1.73598 * 119.89039 * 179.75065 * 25 12 11 27 27 C 1.37756 * 120.22101 * 359.72098 * 25 12 11 28 28 H 0.96996 * 120.00129 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.11789 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.86701 * 179.71693 * 11 10 9 31 31 H 1.09004 * 108.97005 * 356.57870 * 17 16 13 32 32 H 1.09005 * 108.97657 * 115.36165 * 17 16 13 33 33 H 1.08999 * 108.88238 * 79.42328 * 18 17 16 34 34 H 1.09000 * 108.88654 * 197.98868 * 18 17 16 35 35 H 1.08991 * 117.54322 * 354.75712 * 21 19 18 36 36 H 1.09007 * 117.53850 * 140.02752 * 21 19 18 37 37 H 1.08999 * 109.11712 * 260.55148 * 24 16 13 38 38 H 1.08999 * 109.11416 * 19.61902 * 24 16 13 39 39 H 1.07994 * 120.13459 * 180.02562 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0685 -1.2231 0.2042 9 6 1.3264 -2.4219 -0.2656 10 6 0.2105 -2.4329 -1.1232 11 6 -0.4488 -3.6149 -1.3714 12 6 -0.0110 -4.7946 -0.7895 13 16 -0.8611 -6.3018 -1.1219 14 8 -1.0524 -6.9398 0.1334 15 8 -1.9305 -5.9744 -1.9984 16 7 0.1717 -7.2672 -1.9844 17 6 0.2719 -7.0775 -3.4216 18 6 -0.0151 -8.3568 -4.1850 19 6 0.6168 -9.5769 -3.5326 20 1 1.1925 -10.2154 -4.2026 21 6 -0.2420 -10.2991 -2.4805 22 6 1.0263 -9.5666 -2.0692 23 1 1.8768 -10.1975 -1.8107 24 6 0.9507 -8.2711 -1.2750 25 6 1.0878 -4.7962 0.0575 26 17 1.6188 -6.2813 0.7830 27 6 1.7592 -3.6234 0.3244 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1300 -1.5161 -1.5813 30 1 -1.3081 -3.6244 -2.0256 31 1 -0.4423 -6.3135 -3.7289 32 1 1.2791 -6.7392 -3.6651 33 1 -1.0940 -8.5028 -4.2356 34 1 0.3752 -8.2583 -5.1979 35 1 -1.1958 -9.8457 -2.2110 36 1 -0.2195 -11.3889 -2.4733 37 1 1.9584 -7.8899 -1.1098 38 1 0.4829 -8.4700 -0.3108 39 1 2.6146 -3.6263 0.9836 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364005479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:41 Heat of formation + Delta-G solvation = -41.734966 kcal Electronic energy + Delta-G solvation = -25757.790178 eV Core-core repulsion = 22011.262245 eV Total energy + Delta-G solvation = -3746.527933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.31755 -37.90003 -36.67643 -35.78046 -35.16717 -34.39672 -34.01488 -31.46699 -30.46342 -29.41856 -26.18844 -25.96708 -23.88600 -21.70169 -21.49365 -21.44895 -19.41255 -17.95363 -17.82931 -17.49114 -16.62062 -15.90061 -15.67470 -15.59338 -14.59354 -14.56448 -14.17676 -13.82103 -13.69418 -13.40387 -13.00971 -12.86062 -12.67401 -12.54183 -12.25051 -11.91161 -11.80903 -11.67194 -11.52604 -11.38917 -11.36488 -11.17241 -11.10655 -10.70079 -10.60140 -10.49556 -10.33436 -10.07466 -9.99384 -9.79272 -9.64303 -9.53699 -8.63555 -8.11396 -7.72636 -7.22082 -4.95620 1.11379 2.01175 2.57758 2.81195 2.83423 2.87523 2.89685 3.51354 3.61039 3.71709 4.12604 4.41102 4.58045 4.80671 4.85973 4.99152 5.08186 5.14332 5.26426 5.40348 5.44222 5.59757 5.77717 5.87157 5.90388 5.95313 5.97360 6.07526 6.13397 6.28716 6.38252 6.46941 6.52769 6.64036 6.73136 6.95037 7.01590 7.13424 7.35509 7.56206 7.72822 8.13717 8.33641 8.39797 9.70854 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.003599 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.852409 B = 7777.704378 C = 8090.106211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.432 4.432 8 H 0.091 0.909 9 C 0.147 3.853 10 C -0.173 4.173 11 C -0.010 4.010 12 C -0.784 4.784 13 S 2.690 3.310 14 O -0.966 6.966 15 O -0.980 6.980 16 N -0.991 5.991 17 C 0.123 3.877 18 C -0.101 4.101 19 C -0.142 4.142 20 H 0.101 0.899 21 C -0.182 4.182 22 C -0.147 4.147 23 H 0.107 0.893 24 C 0.145 3.855 25 C 0.090 3.910 26 Cl -0.100 7.100 27 C -0.219 4.219 28 H 0.291 0.709 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -10.050 -5.909 12.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.152 4.152 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.460 4.460 8 H 0.109 0.891 9 C 0.143 3.857 10 C -0.193 4.193 11 C -0.030 4.030 12 C -0.879 4.879 13 S 2.788 3.212 14 O -0.956 6.956 15 O -0.971 6.971 16 N -0.826 5.826 17 C -0.003 4.003 18 C -0.140 4.140 19 C -0.160 4.160 20 H 0.119 0.881 21 C -0.219 4.219 22 C -0.166 4.166 23 H 0.125 0.875 24 C 0.019 3.981 25 C 0.062 3.938 26 Cl -0.071 7.071 27 C -0.240 4.240 28 H 0.103 0.897 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.947 -10.286 -5.594 11.869 hybrid contribution 0.992 1.082 0.136 1.474 sum 2.939 -9.204 -5.458 11.097 Atomic orbital electron populations 1.69778 1.07845 1.30668 1.30711 1.26126 0.95012 1.02128 0.91917 0.86054 0.80391 0.79223 0.79791 1.18748 1.19762 1.18138 1.19918 0.97047 0.90340 1.38652 0.89106 1.17738 0.90187 0.91432 0.86308 1.21376 0.99554 0.96800 1.01577 1.20300 0.96440 0.91200 0.95101 1.29186 1.17970 1.18211 1.22514 1.01500 0.73194 0.73570 0.72899 1.93521 1.84908 1.75507 1.41710 1.93468 1.51732 1.85070 1.66834 1.56837 1.61364 1.48722 1.15712 1.20611 1.02688 0.97538 0.79469 1.20949 1.00965 0.93306 0.98821 1.21931 1.03288 0.99399 0.91404 0.88122 1.23115 0.95625 0.98689 1.04448 1.22037 0.99104 0.98810 0.96692 0.87523 1.20564 0.96844 0.85683 0.94964 1.19999 0.94190 0.85875 0.93715 1.98318 1.90226 1.35437 1.83155 1.21020 1.04572 0.91547 1.06883 0.89729 0.85740 0.86527 0.89039 0.91775 0.91257 0.90522 0.88835 0.88926 0.91127 0.88269 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.82 11.10 55.55 0.62 -17.21 16 2 C 0.07 1.56 5.20 -17.34 -0.09 1.47 16 3 Si 0.92 16.45 29.58 -169.99 -5.03 11.42 16 4 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 6 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 7 C -0.43 -10.14 9.04 -37.74 -0.34 -10.49 16 8 H 0.09 2.00 7.88 -52.48 -0.41 1.59 16 9 C 0.15 3.58 5.51 -106.83 -0.59 2.99 16 10 C -0.17 -4.14 8.65 -38.87 -0.34 -4.48 16 11 C -0.01 -0.23 9.52 -39.67 -0.38 -0.60 16 12 C -0.78 -17.25 5.94 -39.25 -0.23 -17.49 16 13 S 2.69 53.60 5.05 -107.50 -0.54 53.05 16 14 O -0.97 -20.90 14.57 -57.17 -0.83 -21.73 16 15 O -0.98 -20.88 15.56 -57.17 -0.89 -21.77 16 16 N -0.99 -15.92 3.26 -117.20 -0.38 -16.30 16 17 C 0.12 1.70 6.28 -5.34 -0.03 1.66 16 18 C -0.10 -1.16 5.97 -27.84 -0.17 -1.32 16 19 C -0.14 -1.55 6.17 -91.18 -0.56 -2.11 16 20 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.18 -2.07 9.95 -26.75 -0.27 -2.33 16 22 C -0.15 -1.74 5.99 -92.02 -0.55 -2.29 16 23 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 24 C 0.14 2.11 4.75 -5.00 -0.02 2.08 16 25 C 0.09 1.99 6.29 -39.57 -0.25 1.74 16 26 Cl -0.10 -1.90 22.95 -51.86 -1.19 -3.09 16 27 C -0.22 -5.03 9.57 -38.84 -0.37 -5.41 16 28 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 29 H 0.12 2.99 6.46 -52.49 -0.34 2.65 16 30 H 0.12 2.46 7.31 -52.49 -0.38 2.07 16 31 H 0.09 1.31 6.86 -51.93 -0.36 0.95 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.00 6.93 -51.93 -0.36 0.64 16 38 H 0.10 1.56 6.12 -51.93 -0.32 1.24 16 39 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -27.53 337.03 -12.04 -39.57 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.68 Total: 7.52 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: -4.19 Total: -36.56 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.23 Total: -33.50 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.72 Total: -43.51 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 16 Polarization: 53.60 SS G_CDS: -0.54 Total: 53.05 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -1.19 Total: -3.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.53 -12.04 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364005479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.163 kcal (2) G-P(sol) polarization free energy of solvation -27.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds