Wall clock time and date at job start Sat Apr 11 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00118 * 2 1 4 4 H 1.48496 * 109.47030 * 269.99867 * 3 2 1 5 5 H 1.48502 * 109.47200 * 29.99597 * 3 2 1 6 6 H 1.48497 * 109.47222 * 149.99627 * 3 2 1 7 7 C 1.39939 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00370 * 192.57677 * 7 2 1 9 9 C 1.41394 * 120.00200 * 12.58057 * 7 2 1 10 10 C 1.40741 * 120.23641 * 30.94835 * 9 7 2 11 11 C 1.37602 * 119.77167 * 180.25756 * 10 9 7 12 12 C 1.38634 * 120.26380 * 359.44492 * 11 10 9 13 13 S 1.76201 * 119.75931 * 180.26081 * 12 11 10 14 14 O 1.42103 * 106.40081 * 226.79354 * 13 12 11 15 15 O 1.42090 * 106.40239 * 359.71566 * 13 12 11 16 16 N 1.65602 * 107.21921 * 113.25725 * 13 12 11 17 17 C 1.45310 * 118.82083 * 276.93323 * 16 13 12 18 18 C 1.51708 * 111.99841 * 235.92918 * 17 16 13 19 19 C 1.52105 * 112.45905 * 318.65837 * 18 17 16 20 20 H 1.08997 * 115.19337 * 229.70871 * 19 18 17 21 21 C 1.53817 * 115.97852 * 89.30785 * 19 18 17 22 22 C 1.51969 * 121.30011 * 20.48476 * 19 18 17 23 23 H 1.09000 * 115.76675 * 210.31681 * 22 19 18 24 24 C 1.45530 * 118.81849 * 96.66540 * 16 13 12 25 25 C 1.38737 * 120.48429 * 0.55734 * 12 11 10 26 26 Cl 1.73598 * 119.89039 * 179.75065 * 25 12 11 27 27 C 1.37756 * 120.22101 * 359.72098 * 25 12 11 28 28 H 0.96996 * 120.00129 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.11789 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.86701 * 179.71693 * 11 10 9 31 31 H 1.09004 * 108.97005 * 356.57870 * 17 16 13 32 32 H 1.09005 * 108.97657 * 115.36165 * 17 16 13 33 33 H 1.08999 * 108.88238 * 79.42328 * 18 17 16 34 34 H 1.09000 * 108.88654 * 197.98868 * 18 17 16 35 35 H 1.08991 * 117.54322 * 354.75712 * 21 19 18 36 36 H 1.09007 * 117.53850 * 140.02752 * 21 19 18 37 37 H 1.08999 * 109.11712 * 260.55148 * 24 16 13 38 38 H 1.08999 * 109.11416 * 19.61902 * 24 16 13 39 39 H 1.07994 * 120.13459 * 180.02562 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0685 -1.2231 0.2042 9 6 1.3264 -2.4219 -0.2656 10 6 0.2105 -2.4329 -1.1232 11 6 -0.4488 -3.6149 -1.3714 12 6 -0.0110 -4.7946 -0.7895 13 16 -0.8611 -6.3018 -1.1219 14 8 -1.0524 -6.9398 0.1334 15 8 -1.9305 -5.9744 -1.9984 16 7 0.1717 -7.2672 -1.9844 17 6 0.2719 -7.0775 -3.4216 18 6 -0.0151 -8.3568 -4.1850 19 6 0.6168 -9.5769 -3.5326 20 1 1.1925 -10.2154 -4.2026 21 6 -0.2420 -10.2991 -2.4805 22 6 1.0263 -9.5666 -2.0692 23 1 1.8768 -10.1975 -1.8107 24 6 0.9507 -8.2711 -1.2750 25 6 1.0878 -4.7962 0.0575 26 17 1.6188 -6.2813 0.7830 27 6 1.7592 -3.6234 0.3244 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1300 -1.5161 -1.5813 30 1 -1.3081 -3.6244 -2.0256 31 1 -0.4423 -6.3135 -3.7289 32 1 1.2791 -6.7392 -3.6651 33 1 -1.0940 -8.5028 -4.2356 34 1 0.3752 -8.2583 -5.1979 35 1 -1.1958 -9.8457 -2.2110 36 1 -0.2195 -11.3889 -2.4733 37 1 1.9584 -7.8899 -1.1098 38 1 0.4829 -8.4700 -0.3108 39 1 2.6146 -3.6263 0.9836 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364005479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:41 Heat of formation + Delta-G solvation = -56.298647 kcal Electronic energy + Delta-G solvation = -25758.421706 eV Core-core repulsion = 22011.262245 eV Total energy + Delta-G solvation = -3747.159461 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31735 -39.65321 -38.34276 -37.43684 -36.84511 -35.73261 -35.52152 -32.50233 -32.23088 -31.19479 -27.78739 -27.22789 -24.94388 -23.44129 -23.22685 -22.39208 -20.72149 -19.58443 -19.33024 -18.80217 -18.21604 -17.35543 -17.13193 -16.67639 -16.21868 -16.10372 -15.42701 -15.22685 -15.12837 -14.84761 -14.57399 -14.27682 -14.00928 -13.92882 -13.88700 -13.38082 -13.14958 -13.06019 -12.99154 -12.94137 -12.78501 -12.65766 -12.39648 -12.25669 -12.01070 -12.00090 -11.81145 -11.56244 -11.33832 -11.24639 -10.84646 -10.72431 -9.92997 -9.84521 -9.48825 -8.90352 -6.75257 -0.46102 0.26282 0.77213 1.12913 1.37514 1.42617 1.53006 2.06271 2.12045 2.44216 2.79819 2.81934 3.31794 3.46621 3.59178 3.94110 3.98529 4.06133 4.12903 4.21109 4.36913 4.43857 4.63374 4.69334 4.73314 4.84282 4.88444 4.91173 4.93621 4.99108 5.00756 5.11665 5.19225 5.23032 5.30188 5.32875 5.43346 5.53538 5.77962 5.83206 5.93690 6.35289 6.57175 6.60523 8.06018 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.003599 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.852409 B = 7777.704378 C = 8090.106211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.034 3.966 3 Si 0.996 3.004 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.457 4.457 8 H 0.099 0.901 9 C 0.123 3.877 10 C -0.191 4.191 11 C -0.016 4.016 12 C -0.797 4.797 13 S 2.706 3.294 14 O -0.986 6.986 15 O -0.997 6.997 16 N -0.982 5.982 17 C 0.111 3.889 18 C -0.102 4.102 19 C -0.134 4.134 20 H 0.129 0.871 21 C -0.186 4.186 22 C -0.154 4.154 23 H 0.132 0.868 24 C 0.138 3.862 25 C 0.084 3.916 26 Cl -0.073 7.073 27 C -0.235 4.235 28 H 0.300 0.700 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.364 -11.074 -6.854 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.484 4.484 8 H 0.117 0.883 9 C 0.119 3.881 10 C -0.211 4.211 11 C -0.036 4.036 12 C -0.889 4.889 13 S 2.802 3.198 14 O -0.976 6.976 15 O -0.987 6.987 16 N -0.821 5.821 17 C -0.014 4.014 18 C -0.141 4.141 19 C -0.152 4.152 20 H 0.147 0.853 21 C -0.223 4.223 22 C -0.174 4.174 23 H 0.150 0.850 24 C 0.013 3.987 25 C 0.056 3.944 26 Cl -0.044 7.044 27 C -0.255 4.255 28 H 0.111 0.889 29 H 0.134 0.866 30 H 0.143 0.857 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.340 -11.304 -6.530 13.475 hybrid contribution 0.528 1.274 0.427 1.444 sum 3.867 -10.030 -6.103 12.361 Atomic orbital electron populations 1.69821 1.09393 1.32130 1.31012 1.27026 0.95634 1.05202 0.90719 0.84968 0.79001 0.74540 0.79975 1.18123 1.19155 1.17570 1.20240 0.97597 0.91000 1.39523 0.88342 1.18060 0.90701 0.92502 0.86848 1.21382 1.00417 0.96912 1.02436 1.20463 0.96598 0.91283 0.95237 1.29583 1.17848 1.19214 1.22264 1.00957 0.73230 0.73027 0.72544 1.93486 1.85435 1.75505 1.43158 1.93439 1.52834 1.85383 1.67078 1.56569 1.61040 1.47955 1.16525 1.20897 1.03289 0.99055 0.78116 1.20998 1.00932 0.92193 0.99961 1.22076 1.02793 0.99151 0.91168 0.85336 1.23171 0.94440 0.99927 1.04796 1.22057 1.00380 0.97655 0.97285 0.85027 1.20702 0.96347 0.86762 0.94908 1.20131 0.93958 0.86857 0.93471 1.98316 1.89942 1.33482 1.82680 1.21182 1.05278 0.91696 1.07393 0.88860 0.86634 0.85668 0.90019 0.90404 0.91942 0.87585 0.90997 0.86676 0.90724 0.89791 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.85 11.10 21.82 0.24 -37.60 16 2 C 0.03 1.49 5.20 85.26 0.44 1.94 16 3 Si 1.00 33.22 29.58 68.60 2.03 35.25 16 4 H -0.26 -8.28 7.11 99.48 0.71 -7.57 16 5 H -0.27 -8.59 7.11 99.48 0.71 -7.89 16 6 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 7 C -0.46 -21.80 9.04 23.46 0.21 -21.59 16 8 H 0.10 4.38 7.88 -2.91 -0.02 4.35 16 9 C 0.12 6.14 5.51 -21.30 -0.12 6.03 16 10 C -0.19 -9.51 8.65 22.73 0.20 -9.31 16 11 C -0.02 -0.73 9.52 22.21 0.21 -0.52 16 12 C -0.80 -35.65 5.94 22.48 0.13 -35.52 16 13 S 2.71 108.55 5.05 -56.49 -0.29 108.27 16 14 O -0.99 -42.92 14.57 -128.00 -1.86 -44.78 16 15 O -1.00 -42.94 15.56 -128.00 -1.99 -44.93 16 16 N -0.98 -30.84 3.26 -524.70 -1.71 -32.55 16 17 C 0.11 2.93 6.28 86.18 0.54 3.47 16 18 C -0.10 -2.06 5.97 29.87 0.18 -1.88 16 19 C -0.13 -2.46 6.17 -11.15 -0.07 -2.53 16 20 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 21 C -0.19 -3.78 9.95 30.58 0.30 -3.48 16 22 C -0.15 -3.23 5.99 -11.70 -0.07 -3.30 16 23 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 24 C 0.14 3.82 4.75 86.28 0.41 4.23 16 25 C 0.08 3.73 6.29 22.27 0.14 3.87 16 26 Cl -0.07 -2.74 22.95 -2.72 -0.06 -2.80 16 27 C -0.23 -10.98 9.57 22.75 0.22 -10.76 16 28 H 0.30 12.64 8.30 -92.71 -0.77 11.87 16 29 H 0.12 5.82 6.46 -2.91 -0.02 5.80 16 30 H 0.13 5.46 7.31 -2.91 -0.02 5.44 16 31 H 0.08 2.31 6.86 -2.39 -0.02 2.29 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.82 16 33 H 0.06 1.36 8.05 -2.39 -0.02 1.34 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.07 1.99 6.93 -2.39 -0.02 1.97 16 38 H 0.08 2.59 6.12 -2.39 -0.01 2.58 16 39 H 0.12 5.29 8.06 -2.91 -0.02 5.26 16 Total: -1.00 -59.94 337.03 0.17 -59.77 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 1.08 Total: 28.73 kcal Atomic # 6 Polarization: -72.09 SS G_CDS: 2.73 Total: -69.36 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -1.47 Total: -70.16 kcal Atomic # 8 Polarization: -85.85 SS G_CDS: -3.86 Total: -89.71 kcal Atomic # 14 Polarization: 33.22 SS G_CDS: 2.03 Total: 35.25 kcal Atomic # 16 Polarization: 108.55 SS G_CDS: -0.29 Total: 108.27 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.06 Total: -2.80 kcal Total: -59.94 0.17 -59.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364005479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.474 kcal (2) G-P(sol) polarization free energy of solvation -59.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds