Wall clock time and date at job start Sat Apr 11 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 108.57817 * 2 1 4 4 O 1.42094 * 108.58132 * 228.97102 * 2 1 3 5 5 C 1.81405 * 101.91908 * 114.48435 * 2 1 3 6 6 C 1.53496 * 114.20400 * 184.99930 * 5 2 1 7 7 N 1.47070 * 87.97920 * 139.85508 * 6 5 2 8 8 C 1.34781 * 136.05340 * 152.84972 * 7 6 5 9 9 O 1.21550 * 119.99907 * 354.45390 * 8 7 6 10 10 C 1.47861 * 119.99995 * 174.45831 * 8 7 6 11 11 C 1.39675 * 120.10137 * 353.53833 * 10 8 7 12 12 C 1.38035 * 120.03989 * 180.25561 * 11 10 8 13 13 C 1.38175 * 120.24605 * 359.78628 * 12 11 10 14 14 C 1.39183 * 120.19787 * 359.97438 * 13 12 11 15 15 S 1.76209 * 120.01991 * 179.97438 * 14 13 12 16 16 C 1.76193 * 100.00229 * 265.72183 * 15 14 13 17 17 H 1.08003 * 119.99792 * 5.13905 * 16 15 14 18 18 C 1.38723 * 120.00312 * 185.14035 * 16 15 14 19 19 N 1.31627 * 119.99797 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00247 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47397 * 59.99636 * 20 18 16 22 22 H 1.48498 * 109.47360 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46853 * 299.99799 * 20 18 16 24 24 C 1.38872 * 119.96171 * 359.97438 * 14 13 12 25 25 C 1.47060 * 87.88772 * 333.09966 * 7 6 5 26 26 H 1.08996 * 109.47364 * 305.51596 * 1 2 3 27 27 H 1.09007 * 109.47098 * 65.51468 * 1 2 3 28 28 H 1.09003 * 109.47183 * 185.50944 * 1 2 3 29 29 H 1.09003 * 113.27726 * 51.93310 * 5 2 1 30 30 H 1.08993 * 113.47014 * 25.07706 * 6 5 2 31 31 H 1.09002 * 113.51982 * 254.63833 * 6 5 2 32 32 H 1.08004 * 119.98269 * 359.97438 * 11 10 8 33 33 H 1.08001 * 119.87820 * 179.76791 * 12 11 10 34 34 H 1.07997 * 119.90473 * 179.97438 * 13 12 11 35 35 H 0.97001 * 119.99840 * 180.02562 * 19 18 16 36 36 H 1.07999 * 120.12079 * 179.97438 * 24 14 13 37 37 H 1.09003 * 113.46779 * 141.68137 * 25 7 6 38 38 H 1.09007 * 113.47076 * 272.12039 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0160 5 6 2.1887 -0.7356 1.6153 6 6 3.6833 -0.7604 1.9641 7 7 3.3147 -0.3989 3.3412 8 6 3.8447 -0.5803 4.5671 9 8 4.8383 -1.2669 4.7041 10 6 3.2174 0.0559 5.7453 11 6 2.1592 0.9519 5.5772 12 6 1.5780 1.5491 6.6776 13 6 2.0360 1.2609 7.9490 14 6 3.0866 0.3657 8.1284 15 16 3.6675 0.0021 9.7518 16 6 4.9875 1.1630 9.8717 17 1 5.1504 1.8791 9.0797 18 6 5.8174 1.1574 10.9832 19 7 5.6185 0.2850 11.9486 20 14 7.2165 2.3886 11.1106 21 1 6.6665 3.7677 11.0806 22 1 7.9487 2.1759 12.3849 23 1 8.1461 2.2015 9.9679 24 6 3.6768 -0.2407 7.0273 25 6 2.1101 0.2421 2.7926 26 1 -0.3634 0.5970 0.8364 27 1 -0.3634 0.4260 -0.9353 28 1 -0.3634 -1.0229 0.0987 29 1 1.6736 -1.6806 1.7882 30 1 4.2611 0.0096 1.4531 31 1 4.1331 -1.7498 1.8807 32 1 1.7984 1.1811 4.5853 33 1 0.7624 2.2444 6.5444 34 1 1.5776 1.7316 8.8061 35 1 6.1986 0.2813 12.7260 36 1 4.4924 -0.9354 7.1636 37 1 1.2241 0.1031 3.4120 38 1 2.2647 1.2819 2.5044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434084647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:51 Heat of formation + Delta-G solvation = -22.058640 kcal Electronic energy + Delta-G solvation = -24049.733772 eV Core-core repulsion = 20306.102775 eV Total energy + Delta-G solvation = -3743.630997 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.91817 -38.75044 -37.59297 -37.41670 -36.57001 -32.53282 -31.72746 -30.68064 -30.33361 -29.61407 -26.77693 -25.59163 -24.51139 -22.46029 -22.14978 -19.80400 -19.40288 -18.28227 -17.79547 -17.20464 -16.96865 -16.62038 -16.20577 -15.72932 -15.16679 -14.88490 -14.84534 -14.54835 -14.33802 -13.80934 -13.73009 -13.63578 -13.42087 -13.36446 -13.16795 -12.94804 -12.63471 -12.52169 -12.34843 -11.94844 -11.65995 -11.32337 -11.29758 -11.19069 -11.10598 -11.08178 -10.72675 -10.04511 -9.87362 -9.18935 -9.14872 -9.05758 -8.67244 -8.09347 -6.75316 -6.31059 -4.05735 -0.63778 1.05748 1.58193 2.06279 2.41204 2.81879 2.89481 3.18094 3.19028 3.22217 3.25330 3.41487 3.61433 3.93270 4.00898 4.19452 4.23828 4.28326 4.35299 4.49952 4.70633 4.72679 4.99017 5.05387 5.09014 5.10807 5.14325 5.23646 5.35233 5.43839 5.67515 5.79403 5.95739 6.16800 6.49941 6.55214 6.85678 7.11373 7.35357 7.54943 8.04272 8.29905 9.14788 10.75627 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.002349 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.140759 B =11918.076184 C =12260.832864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.432 3.568 3 O -0.930 6.930 4 O -0.932 6.932 5 C -0.637 4.637 6 C 0.143 3.857 7 N -0.640 5.640 8 C 0.597 3.403 9 O -0.523 6.523 10 C -0.151 4.151 11 C -0.101 4.101 12 C -0.141 4.141 13 C -0.053 4.053 14 C -0.106 4.106 15 S -0.033 6.033 16 C -0.521 4.521 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.018 4.018 25 C 0.124 3.876 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.166 0.834 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.271 0.729 36 H 0.140 0.860 37 H 0.104 0.896 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.461 0.439 -22.758 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.612 3.388 3 O -0.927 6.927 4 O -0.928 6.928 5 C -0.745 4.745 6 C 0.019 3.981 7 N -0.378 5.378 8 C 0.389 3.611 9 O -0.399 6.399 10 C -0.156 4.156 11 C -0.120 4.120 12 C -0.161 4.161 13 C -0.074 4.074 14 C -0.216 4.216 15 S 0.201 5.799 16 C -0.668 4.668 17 H 0.094 0.906 18 C -0.135 4.135 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.039 4.039 25 C 0.000 4.000 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.184 0.816 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.157 0.843 37 H 0.122 0.878 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.495 -0.547 -22.060 25.866 hybrid contribution 0.608 1.318 -0.281 1.478 sum -12.887 0.771 -22.341 25.803 Atomic orbital electron populations 1.30213 1.25827 1.11952 1.12123 1.07614 0.78788 0.75764 0.76610 1.93634 1.79284 1.33813 1.85929 1.93624 1.79226 1.67089 1.52911 1.32458 1.08162 1.13306 1.20530 1.22430 0.90254 1.03804 0.81603 1.49289 1.25702 1.58106 1.04685 1.18050 0.82712 0.79733 0.80604 1.90810 1.25610 1.39053 1.84409 1.19717 1.00352 1.02690 0.92810 1.21549 0.95124 0.96179 0.99129 1.21085 1.01183 1.01228 0.92586 1.21997 0.94515 0.93838 0.97061 1.22871 0.98235 0.98510 1.02022 1.83608 1.40178 1.52003 1.04103 1.22792 1.16287 1.18902 1.08866 0.90644 1.25002 0.97417 0.96311 0.94789 1.69976 1.38220 1.34176 1.08168 0.86170 0.80813 0.80587 0.77733 1.19798 1.20701 1.19754 1.21967 0.96561 0.95738 0.89671 1.22841 0.90987 0.96362 0.89849 0.84928 0.84990 0.85059 0.81591 0.88413 0.88106 0.85694 0.85731 0.84955 0.91959 0.84268 0.87787 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -0.80 10.62 101.05 1.07 0.28 16 2 S 2.43 11.68 5.38 -107.50 -0.58 11.10 16 3 O -0.93 -7.68 17.30 -57.83 -1.00 -8.68 16 4 O -0.93 -8.13 18.10 -57.83 -1.05 -9.17 16 5 C -0.64 -3.07 4.49 -26.35 -0.12 -3.19 16 6 C 0.14 1.23 8.23 -8.50 -0.07 1.16 16 7 N -0.64 -7.37 3.67 -186.53 -0.68 -8.06 16 8 C 0.60 9.76 8.01 -12.32 -0.10 9.66 16 9 O -0.52 -10.57 17.14 5.32 0.09 -10.48 16 10 C -0.15 -2.52 5.87 -105.00 -0.62 -3.14 16 11 C -0.10 -1.33 9.14 -39.12 -0.36 -1.69 16 12 C -0.14 -1.92 10.02 -39.68 -0.40 -2.31 16 13 C -0.05 -0.92 9.79 -39.25 -0.38 -1.30 16 14 C -0.11 -2.22 5.45 -39.00 -0.21 -2.43 16 15 S -0.03 -0.85 21.41 -107.50 -2.30 -3.15 16 16 C -0.52 -14.65 9.46 30.91 0.29 -14.35 16 17 H 0.08 2.10 7.79 -52.48 -0.41 1.69 16 18 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 19 N -0.87 -25.36 13.22 55.49 0.73 -24.62 16 20 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 24 C -0.02 -0.35 9.34 -38.92 -0.36 -0.72 16 25 C 0.12 0.80 5.67 -8.64 -0.05 0.75 16 26 H 0.13 -0.07 8.14 -51.93 -0.42 -0.49 16 27 H 0.13 0.12 8.14 -51.92 -0.42 -0.31 16 28 H 0.13 -0.05 8.14 -51.92 -0.42 -0.47 16 29 H 0.17 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.74 8.11 -51.93 -0.42 0.32 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.13 1.13 4.19 -52.48 -0.22 0.91 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.14 3.04 7.66 -52.49 -0.40 2.64 16 37 H 0.10 0.45 6.78 -51.93 -0.35 0.10 16 38 H 0.11 0.58 7.44 -51.93 -0.39 0.19 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -39.55 355.79 -10.13 -49.68 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -4.28 Total: -3.10 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -1.40 Total: -15.31 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.05 Total: -32.68 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -1.96 Total: -28.33 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 10.82 SS G_CDS: -2.88 Total: 7.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.55 -10.13 -49.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434084647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.623 kcal (2) G-P(sol) polarization free energy of solvation -39.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds