Wall clock time and date at job start Sat Apr 11 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 108.57817 * 2 1 4 4 O 1.42094 * 108.58132 * 228.97102 * 2 1 3 5 5 C 1.81405 * 101.91908 * 114.48435 * 2 1 3 6 6 C 1.53496 * 114.20400 * 184.99930 * 5 2 1 7 7 N 1.47070 * 87.97920 * 139.85508 * 6 5 2 8 8 C 1.34781 * 136.05340 * 152.84972 * 7 6 5 9 9 O 1.21550 * 119.99907 * 354.45390 * 8 7 6 10 10 C 1.47861 * 119.99995 * 174.45831 * 8 7 6 11 11 C 1.39675 * 120.10137 * 353.53833 * 10 8 7 12 12 C 1.38035 * 120.03989 * 180.25561 * 11 10 8 13 13 C 1.38175 * 120.24605 * 359.78628 * 12 11 10 14 14 C 1.39183 * 120.19787 * 359.97438 * 13 12 11 15 15 S 1.76209 * 120.01991 * 179.97438 * 14 13 12 16 16 C 1.76193 * 100.00229 * 265.72183 * 15 14 13 17 17 H 1.08003 * 119.99792 * 5.13905 * 16 15 14 18 18 C 1.38723 * 120.00312 * 185.14035 * 16 15 14 19 19 N 1.31627 * 119.99797 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00247 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47397 * 59.99636 * 20 18 16 22 22 H 1.48498 * 109.47360 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46853 * 299.99799 * 20 18 16 24 24 C 1.38872 * 119.96171 * 359.97438 * 14 13 12 25 25 C 1.47060 * 87.88772 * 333.09966 * 7 6 5 26 26 H 1.08996 * 109.47364 * 305.51596 * 1 2 3 27 27 H 1.09007 * 109.47098 * 65.51468 * 1 2 3 28 28 H 1.09003 * 109.47183 * 185.50944 * 1 2 3 29 29 H 1.09003 * 113.27726 * 51.93310 * 5 2 1 30 30 H 1.08993 * 113.47014 * 25.07706 * 6 5 2 31 31 H 1.09002 * 113.51982 * 254.63833 * 6 5 2 32 32 H 1.08004 * 119.98269 * 359.97438 * 11 10 8 33 33 H 1.08001 * 119.87820 * 179.76791 * 12 11 10 34 34 H 1.07997 * 119.90473 * 179.97438 * 13 12 11 35 35 H 0.97001 * 119.99840 * 180.02562 * 19 18 16 36 36 H 1.07999 * 120.12079 * 179.97438 * 24 14 13 37 37 H 1.09003 * 113.46779 * 141.68137 * 25 7 6 38 38 H 1.09007 * 113.47076 * 272.12039 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0160 5 6 2.1887 -0.7356 1.6153 6 6 3.6833 -0.7604 1.9641 7 7 3.3147 -0.3989 3.3412 8 6 3.8447 -0.5803 4.5671 9 8 4.8383 -1.2669 4.7041 10 6 3.2174 0.0559 5.7453 11 6 2.1592 0.9519 5.5772 12 6 1.5780 1.5491 6.6776 13 6 2.0360 1.2609 7.9490 14 6 3.0866 0.3657 8.1284 15 16 3.6675 0.0021 9.7518 16 6 4.9875 1.1630 9.8717 17 1 5.1504 1.8791 9.0797 18 6 5.8174 1.1574 10.9832 19 7 5.6185 0.2850 11.9486 20 14 7.2165 2.3886 11.1106 21 1 6.6665 3.7677 11.0806 22 1 7.9487 2.1759 12.3849 23 1 8.1461 2.2015 9.9679 24 6 3.6768 -0.2407 7.0273 25 6 2.1101 0.2421 2.7926 26 1 -0.3634 0.5970 0.8364 27 1 -0.3634 0.4260 -0.9353 28 1 -0.3634 -1.0229 0.0987 29 1 1.6736 -1.6806 1.7882 30 1 4.2611 0.0096 1.4531 31 1 4.1331 -1.7498 1.8807 32 1 1.7984 1.1811 4.5853 33 1 0.7624 2.2444 6.5444 34 1 1.5776 1.7316 8.8061 35 1 6.1986 0.2813 12.7260 36 1 4.4924 -0.9354 7.1636 37 1 1.2241 0.1031 3.4120 38 1 2.2647 1.2819 2.5044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434084647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:51 Heat of formation + Delta-G solvation = -53.251948 kcal Electronic energy + Delta-G solvation = -24051.086415 eV Core-core repulsion = 20306.102775 eV Total energy + Delta-G solvation = -3744.983640 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83846 -39.86597 -38.76168 -37.99838 -37.05581 -34.67492 -32.93439 -32.00204 -30.88846 -30.14504 -27.77966 -27.39426 -25.49910 -23.70422 -23.19975 -20.85368 -19.89887 -19.78913 -18.77404 -18.22450 -17.96041 -17.16149 -16.95310 -16.85238 -16.78678 -16.25103 -16.12350 -15.67990 -15.25285 -15.09408 -14.61884 -14.45457 -14.08776 -13.95356 -13.80712 -13.75757 -13.71561 -13.27571 -13.14819 -13.14018 -13.03108 -12.98322 -12.71577 -12.46394 -12.14806 -11.99576 -11.77194 -11.67175 -11.25489 -11.07942 -10.74536 -10.17704 -9.86371 -9.74104 -8.82850 -8.41457 -6.21575 -0.99130 -0.24237 0.21228 1.27460 1.36979 1.42419 1.46293 1.59790 1.71618 1.84284 2.21785 2.35542 2.73404 2.81946 2.91645 3.15206 3.30176 3.39198 3.66465 3.87381 3.91923 3.97337 4.16718 4.22745 4.23345 4.30168 4.35723 4.38441 4.42927 4.54606 4.72370 4.83898 4.90519 5.12020 5.19768 5.27580 5.35830 5.47805 5.84132 6.13231 6.36845 6.87239 6.98953 8.65404 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.002349 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.140759 B =11918.076184 C =12260.832864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.440 3.560 3 O -0.969 6.969 4 O -0.979 6.979 5 C -0.610 4.610 6 C 0.118 3.882 7 N -0.642 5.642 8 C 0.589 3.411 9 O -0.584 6.584 10 C -0.154 4.154 11 C -0.074 4.074 12 C -0.117 4.117 13 C -0.060 4.060 14 C -0.128 4.128 15 S -0.093 6.093 16 C -0.538 4.538 17 H 0.066 0.934 18 C 0.020 3.980 19 N -0.905 5.905 20 Si 0.991 3.009 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.272 1.272 24 C -0.046 4.046 25 C 0.109 3.891 26 H 0.163 0.837 27 H 0.141 0.859 28 H 0.156 0.844 29 H 0.195 0.805 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.138 0.862 35 H 0.274 0.726 36 H 0.099 0.901 37 H 0.141 0.859 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.100 2.773 -25.542 31.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.624 3.376 3 O -0.966 6.966 4 O -0.976 6.976 5 C -0.717 4.717 6 C -0.005 4.005 7 N -0.377 5.377 8 C 0.381 3.619 9 O -0.465 6.465 10 C -0.159 4.159 11 C -0.092 4.092 12 C -0.136 4.136 13 C -0.081 4.081 14 C -0.239 4.239 15 S 0.141 5.859 16 C -0.685 4.685 17 H 0.085 0.915 18 C -0.185 4.185 19 N -0.542 5.542 20 Si 0.812 3.188 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.068 4.068 25 C -0.013 4.013 26 H 0.181 0.819 27 H 0.159 0.841 28 H 0.174 0.826 29 H 0.212 0.788 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.197 0.803 33 H 0.200 0.800 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.158 0.842 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.146 1.804 -24.896 30.283 hybrid contribution 1.542 0.576 0.338 1.681 sum -15.604 2.380 -24.558 29.193 Atomic orbital electron populations 1.30040 1.19570 1.14474 1.14086 1.07186 0.80882 0.74057 0.75475 1.93583 1.81488 1.35339 1.86166 1.93572 1.81617 1.67927 1.54517 1.32365 1.04813 1.14388 1.20107 1.22777 0.93677 1.03795 0.80242 1.49326 1.27092 1.57214 1.04021 1.18029 0.82230 0.79523 0.82138 1.90771 1.28284 1.41766 1.85636 1.19832 1.01308 1.03399 0.91379 1.22140 0.92343 0.93021 1.01719 1.21627 1.01271 1.00430 0.90295 1.22129 0.93416 0.93026 0.99564 1.22504 1.00772 1.01792 0.98810 1.83460 1.40272 1.52828 1.09293 1.23027 1.17271 1.19317 1.08873 0.91547 1.25995 0.99996 0.98276 0.94244 1.70097 1.39414 1.35858 1.08783 0.85119 0.77296 0.78418 0.77947 1.18389 1.19453 1.19770 1.21616 0.96870 0.96647 0.91680 1.23385 0.89961 0.97598 0.90321 0.81897 0.84053 0.82587 0.78772 0.87773 0.88952 0.80320 0.80038 0.84443 0.91650 0.88255 0.84174 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 2.25 10.62 113.37 1.20 3.45 16 2 S 2.44 15.49 5.38 -56.49 -0.30 15.18 16 3 O -0.97 -13.44 17.30 -127.37 -2.20 -15.65 16 4 O -0.98 -15.59 18.10 -127.37 -2.30 -17.89 16 5 C -0.61 -3.53 4.49 30.84 0.14 -3.39 16 6 C 0.12 1.89 8.23 83.18 0.68 2.57 16 7 N -0.64 -13.46 3.67 -862.34 -3.16 -16.62 16 8 C 0.59 19.40 8.01 86.79 0.69 20.10 16 9 O -0.58 -25.29 17.14 -3.87 -0.07 -25.35 16 10 C -0.15 -5.06 5.87 -20.11 -0.12 -5.18 16 11 C -0.07 -1.61 9.14 22.57 0.21 -1.41 16 12 C -0.12 -2.59 10.02 22.21 0.22 -2.37 16 13 C -0.06 -2.01 9.79 22.48 0.22 -1.79 16 14 C -0.13 -5.58 5.45 22.65 0.12 -5.45 16 15 S -0.09 -5.09 21.41 -56.49 -1.21 -6.30 16 16 C -0.54 -31.76 9.46 67.94 0.64 -31.12 16 17 H 0.07 3.89 7.79 -2.91 -0.02 3.86 16 18 C 0.02 1.17 5.49 84.84 0.47 1.64 16 19 N -0.91 -54.86 13.22 21.63 0.29 -54.57 16 20 Si 0.99 45.04 29.55 68.60 2.03 47.06 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 C -0.05 -1.97 9.34 22.70 0.21 -1.76 16 25 C 0.11 0.84 5.67 83.09 0.47 1.31 16 26 H 0.16 -1.43 8.14 -2.39 -0.02 -1.45 16 27 H 0.14 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H 0.16 -1.16 8.14 -2.39 -0.02 -1.18 16 29 H 0.19 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.10 1.52 8.11 -2.39 -0.02 1.50 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.18 1.91 4.19 -2.91 -0.01 1.90 16 33 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 36 H 0.10 4.91 7.66 -2.91 -0.02 4.89 16 37 H 0.14 0.13 6.78 -2.39 -0.02 0.11 16 38 H 0.13 0.60 7.44 -2.38 -0.02 0.58 16 Total: -1.00 -97.51 355.79 -0.67 -98.19 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.10 Total: -0.65 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 5.17 Total: -23.40 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -2.88 Total: -71.19 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -4.57 Total: -58.89 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 10.40 SS G_CDS: -1.51 Total: 8.88 kcal Total: -97.51 -0.67 -98.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434084647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.936 kcal (2) G-P(sol) polarization free energy of solvation -97.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds