Wall clock time and date at job start Sat Apr 11 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47280 * 217.79425 * 3 2 1 5 5 C 1.36868 * 119.99652 * 83.25420 * 4 3 2 6 6 H 1.08003 * 119.99760 * 169.27935 * 5 4 3 7 7 C 1.39040 * 120.00379 * 349.27188 * 5 4 3 8 8 N 1.31367 * 120.00016 * 3.53080 * 7 5 4 9 9 Si 1.86805 * 120.00135 * 183.53550 * 7 5 4 10 10 H 1.48497 * 109.47216 * 89.99965 * 9 7 5 11 11 H 1.48497 * 109.47365 * 209.99907 * 9 7 5 12 12 H 1.48506 * 109.47042 * 330.00105 * 9 7 5 13 13 C 1.34772 * 119.99887 * 263.25512 * 4 3 2 14 14 O 1.21589 * 120.00112 * 182.39410 * 13 4 3 15 15 C 1.47741 * 120.00114 * 2.39204 * 13 4 3 16 16 C 1.39677 * 120.12450 * 42.77050 * 15 13 4 17 17 C 1.37942 * 119.95866 * 180.02562 * 16 15 13 18 18 C 1.38306 * 120.21460 * 359.73511 * 17 16 15 19 19 S 1.76195 * 119.87531 * 180.27230 * 18 17 16 20 20 O 1.42102 * 106.40327 * 270.26831 * 19 18 17 21 21 O 1.42101 * 106.40579 * 43.19079 * 19 18 17 22 22 F 1.61008 * 107.21758 * 156.72918 * 19 18 17 23 23 C 1.38834 * 120.24747 * 0.53994 * 18 17 16 24 24 O 1.35904 * 119.97992 * 179.72834 * 23 18 17 25 25 C 1.42896 * 117.00232 * 179.72870 * 24 23 18 26 26 C 1.38472 * 120.03651 * 359.45628 * 23 18 17 27 27 H 4.40641 * 5.51472 * 179.97438 * 4 1 2 28 28 H 1.09005 * 109.46753 * 97.79243 * 3 2 1 29 29 H 1.09004 * 109.47051 * 337.79579 * 3 2 1 30 30 H 0.97003 * 119.99736 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.02018 * 0.04571 * 16 15 13 32 32 H 1.08005 * 119.89171 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.47696 * 179.97438 * 25 24 23 34 34 H 1.09006 * 109.46690 * 60.00118 * 25 24 23 35 35 H 1.09000 * 109.47318 * 300.00244 * 25 24 23 36 36 H 1.07999 * 120.10136 * 180.24672 * 26 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0923 0.8464 5 6 3.2308 0.9175 2.2004 6 1 3.7478 1.6490 2.8037 7 6 2.6636 -0.2019 2.7993 8 7 2.0953 -1.1261 2.0586 9 14 2.7095 -0.3914 4.6571 10 1 1.4980 0.2314 5.2484 11 1 2.7451 -1.8342 5.0068 12 1 3.9219 0.2779 5.1932 13 6 3.4872 2.2687 0.2918 14 8 3.9331 3.1598 0.9886 15 6 3.3328 2.4756 -1.1629 16 6 2.1780 2.0369 -1.8146 17 6 2.0376 2.2313 -3.1730 18 6 3.0348 2.8648 -3.8922 19 16 2.8431 3.1149 -5.6257 20 8 3.3860 1.9648 -6.2596 21 8 1.5054 3.5522 -5.8226 22 9 3.7903 4.3503 -6.0367 23 6 4.1888 3.2993 -3.2542 24 8 5.1677 3.9161 -3.9672 25 6 6.3251 4.3426 -3.2458 26 6 4.3405 3.1095 -1.8910 27 1 -1.0502 -0.0001 -0.0003 28 1 3.0092 0.1402 -1.0182 29 1 3.0097 -0.9507 0.3884 30 1 1.6999 -1.9071 2.4764 31 1 1.3953 1.5460 -1.2553 32 1 1.1440 1.8920 -3.6759 33 1 7.0263 4.8179 -3.9318 34 1 6.8014 3.4797 -2.7801 35 1 6.0309 5.0550 -2.4751 36 1 5.2360 3.4507 -1.3930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459389681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:00 Heat of formation + Delta-G solvation = -103.909062 kcal Electronic energy + Delta-G solvation = -27605.130322 eV Core-core repulsion = 23291.736848 eV Total energy + Delta-G solvation = -4313.393473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.13864 -41.83601 -40.58798 -38.73190 -38.37156 -37.44073 -37.37401 -34.21034 -33.30703 -32.73676 -31.46207 -28.78073 -28.23521 -27.10220 -25.08634 -23.61482 -21.77206 -21.37784 -19.89967 -19.84940 -19.21180 -18.67225 -18.35086 -17.92007 -17.53293 -17.32567 -16.97647 -16.75532 -16.09533 -15.99632 -15.86346 -15.39598 -15.30759 -15.13168 -14.87141 -14.62547 -14.26010 -14.03732 -13.94949 -13.86291 -13.61688 -13.51694 -13.25184 -12.99976 -12.92619 -12.72962 -12.58707 -12.23268 -12.15116 -12.13061 -11.51092 -11.09342 -10.77580 -10.64362 -10.45696 -10.05929 -9.68051 -8.33810 -6.04982 -1.21437 -0.73113 0.08218 1.30016 1.40196 1.51084 1.64353 1.75312 1.84371 1.97065 2.05702 2.22715 2.30522 2.35701 2.89611 3.01429 3.22151 3.50141 3.62590 3.81228 3.94197 3.97455 4.17809 4.28168 4.30501 4.43636 4.51874 4.63387 4.71533 4.80198 5.12197 5.15774 5.30661 5.35815 5.42040 5.83546 5.87043 6.30541 6.96396 7.05360 7.20954 7.74335 8.51374 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.003508 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.286140 B = 7979.134630 C = 8979.023054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.143 4.143 3 C 0.216 3.784 4 N -0.425 5.425 5 C -0.341 4.341 6 H 0.085 0.915 7 C 0.007 3.993 8 N -0.867 5.867 9 Si 0.995 3.005 10 H -0.276 1.276 11 H -0.266 1.266 12 H -0.272 1.272 13 C 0.450 3.550 14 O -0.624 6.624 15 C -0.014 4.014 16 C -0.165 4.165 17 C 0.023 3.977 18 C -0.715 4.715 19 S 2.721 3.279 20 O -0.943 6.943 21 O -0.942 6.942 22 F -0.455 7.455 23 C 0.209 3.791 24 O -0.324 6.324 25 C 0.012 3.988 26 C -0.187 4.187 27 H 0.238 0.762 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.278 0.722 31 H 0.149 0.851 32 H 0.182 0.818 33 H 0.142 0.858 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 4.169 -13.297 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.145 4.145 3 C 0.094 3.906 4 N -0.139 5.139 5 C -0.468 4.468 6 H 0.103 0.897 7 C -0.196 4.196 8 N -0.504 5.504 9 Si 0.819 3.181 10 H -0.202 1.202 11 H -0.190 1.190 12 H -0.197 1.197 13 C 0.241 3.759 14 O -0.514 6.514 15 C -0.018 4.018 16 C -0.185 4.185 17 C 0.004 3.996 18 C -0.802 4.802 19 S 2.808 3.192 20 O -0.942 6.942 21 O -0.940 6.940 22 F -0.454 7.454 23 C 0.160 3.840 24 O -0.237 6.237 25 C -0.081 4.081 26 C -0.207 4.207 27 H 0.254 0.746 28 H 0.100 0.900 29 H 0.142 0.858 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.199 0.801 33 H 0.160 0.840 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.196 4.492 -13.786 14.665 hybrid contribution 0.130 -0.210 2.365 2.378 sum 2.327 4.282 -11.421 12.418 Atomic orbital electron populations 1.25228 0.96312 1.01402 1.03316 1.23075 0.94598 0.99116 0.97709 1.19016 0.85372 0.93260 0.92951 1.43899 1.52386 1.10341 1.07282 1.19813 1.35886 1.08674 0.82452 0.89717 1.26062 0.94348 0.94444 1.04765 1.70029 1.34673 1.09672 1.36064 0.84891 0.78660 0.78021 0.76553 1.20169 1.19042 1.19672 1.18431 0.86492 0.83221 0.87797 1.90589 1.53179 1.43626 1.63975 1.20216 0.94936 0.93896 0.92777 1.21997 0.98412 1.02482 0.95573 1.20840 0.96109 0.89605 0.93037 1.29861 1.02448 1.21765 1.26088 1.02511 0.72070 0.71354 0.73263 1.93735 1.79318 1.47467 1.73636 1.93731 1.33886 1.81541 1.84870 1.93631 1.84388 1.74693 1.92692 1.18180 0.87085 0.88739 0.89952 1.86029 1.28615 1.71037 1.37990 1.23633 0.84181 1.00894 0.99441 1.21359 1.01561 1.04993 0.92803 0.74588 0.90038 0.85776 0.91138 0.83327 0.80062 0.83974 0.91117 0.91255 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.82 18.88 74.32 1.40 -7.41 16 2 C -0.14 -5.90 8.69 31.12 0.27 -5.63 16 3 C 0.22 9.32 4.76 84.57 0.40 9.72 16 4 N -0.42 -21.13 2.60 -648.83 -1.69 -22.81 16 5 C -0.34 -18.26 9.48 84.10 0.80 -17.46 16 6 H 0.08 4.86 7.20 -2.91 -0.02 4.84 16 7 C 0.01 0.36 5.38 84.95 0.46 0.81 16 8 N -0.87 -41.18 8.08 21.68 0.18 -41.00 16 9 Si 1.00 39.83 29.56 68.60 2.03 41.85 16 10 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 13 C 0.45 22.02 7.24 86.76 0.63 22.64 16 14 O -0.62 -34.83 16.56 -4.00 -0.07 -34.89 16 15 C -0.01 -0.56 4.97 -20.10 -0.10 -0.66 16 16 C -0.17 -5.59 7.58 22.55 0.17 -5.42 16 17 C 0.02 0.62 9.57 22.22 0.21 0.83 16 18 C -0.71 -18.72 5.88 22.43 0.13 -18.59 16 19 S 2.72 60.88 6.54 -56.49 -0.37 60.51 16 20 O -0.94 -24.92 18.04 -128.00 -2.31 -27.22 16 21 O -0.94 -23.64 17.87 -128.00 -2.29 -25.93 16 22 F -0.45 -9.48 16.10 44.97 0.72 -8.76 16 23 C 0.21 5.81 6.66 22.47 0.15 5.96 16 24 O -0.32 -7.42 8.37 -92.47 -0.77 -8.19 16 25 C 0.01 0.19 9.81 113.37 1.11 1.30 16 26 C -0.19 -6.15 8.65 22.64 0.20 -5.96 16 27 H 0.24 6.41 7.80 -4.41 -0.03 6.37 16 28 H 0.08 3.10 5.65 -2.38 -0.01 3.09 16 29 H 0.12 5.74 5.96 -2.39 -0.01 5.73 16 30 H 0.28 12.45 8.31 -92.71 -0.77 11.68 16 31 H 0.15 5.25 4.00 -2.91 -0.01 5.24 16 32 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.11 7.66 -2.38 -0.02 1.10 16 35 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 36 H 0.15 4.67 6.29 -2.91 -0.02 4.65 16 Total: -1.00 -70.02 329.30 2.42 -67.59 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.16 Total: 18.72 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 5.83 Total: -19.86 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -1.51 Total: -63.82 kcal Atomic # 8 Polarization: -90.80 SS G_CDS: -5.44 Total: -96.24 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 0.72 Total: -8.76 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 16 Polarization: 60.88 SS G_CDS: -0.37 Total: 60.51 kcal Total: -70.02 2.42 -67.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459389681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.317 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds