Wall clock time and date at job start Sat Apr 11 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47223 * 168.28154 * 3 2 1 5 5 C 1.52997 * 109.47417 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47114 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.46924 * 179.97438 * 6 5 4 8 8 S 1.65607 * 119.99890 * 164.99983 * 7 6 5 9 9 O 1.42106 * 106.40030 * 311.46106 * 8 7 6 10 10 O 1.42092 * 106.40381 * 178.53993 * 8 7 6 11 11 C 1.76195 * 107.21775 * 64.99649 * 8 7 6 12 12 C 1.38638 * 119.75851 * 115.25815 * 11 8 7 13 13 C 1.37603 * 120.26523 * 180.29864 * 12 11 8 14 14 C 1.40731 * 119.76997 * 359.72302 * 13 12 11 15 15 C 1.41402 * 120.23511 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99902 * 24.38186 * 15 14 13 17 17 C 1.39942 * 120.00052 * 204.37411 * 15 14 13 18 18 N 1.30829 * 119.99902 * 17.86558 * 17 15 14 19 19 Si 1.86796 * 120.00336 * 197.86037 * 17 15 14 20 20 H 1.48501 * 109.46964 * 90.00204 * 19 17 15 21 21 H 1.48497 * 109.47378 * 210.00154 * 19 17 15 22 22 H 1.48498 * 109.47041 * 330.00602 * 19 17 15 23 23 C 1.40671 * 119.52737 * 359.97438 * 14 13 12 24 24 C 1.37759 * 119.73355 * 0.02562 * 23 14 13 25 25 Cl 1.73604 * 119.88879 * 179.97438 * 24 23 14 26 26 H 4.44652 * 5.63291 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47448 * 48.28921 * 3 2 1 28 28 H 1.08995 * 109.47655 * 288.28190 * 3 2 1 29 29 H 1.09005 * 109.46592 * 60.00434 * 4 3 2 30 30 H 1.09000 * 109.47491 * 300.00265 * 4 3 2 31 31 H 1.08997 * 109.47499 * 60.00099 * 5 4 3 32 32 H 1.09004 * 109.47154 * 300.00078 * 5 4 3 33 33 H 1.09001 * 109.47531 * 59.99863 * 6 5 4 34 34 H 1.09000 * 109.47278 * 299.99756 * 6 5 4 35 35 H 0.96991 * 120.00361 * 344.99633 * 7 6 5 36 36 H 1.08004 * 119.86609 * 359.97438 * 12 11 8 37 37 H 1.08003 * 120.11041 * 179.69906 * 13 12 11 38 38 H 0.97000 * 119.99707 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.13404 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4133 -0.2930 5 6 4.6854 1.4139 -0.2936 6 6 5.1947 2.8267 -0.5860 7 7 6.6597 2.8274 -0.5860 8 16 7.4871 4.1091 -1.2302 9 8 6.9059 4.3636 -2.5018 10 8 8.8680 3.8271 -1.0493 11 6 7.1312 5.5154 -0.2302 12 6 8.1474 6.1201 0.4935 13 6 7.8799 7.2152 1.2826 14 6 6.5700 7.7252 1.3493 15 6 6.2842 8.8504 2.1567 16 1 7.0681 9.5510 2.4034 17 6 4.9856 9.0562 2.6358 18 7 4.1280 8.0681 2.6463 19 14 4.4764 10.7414 3.2603 20 1 3.9216 11.5387 2.1370 21 1 3.4430 10.5869 4.3154 22 1 5.6599 11.4384 3.8248 23 6 5.5472 7.1084 0.6063 24 6 5.8373 6.0131 -0.1773 25 17 4.5780 5.2483 -1.0955 26 1 -1.0502 -0.0004 0.0003 27 1 3.0097 -0.6829 -0.7672 28 1 3.0096 -0.3215 0.9757 29 1 2.7918 2.0970 0.4742 30 1 2.7919 1.7356 -1.2687 31 1 5.0487 0.7304 -1.0609 32 1 5.0492 1.0915 0.6820 33 1 4.8314 3.5101 0.1816 34 1 4.8309 3.1495 -1.5614 35 1 7.1450 2.0772 -0.2086 36 1 9.1520 5.7269 0.4417 37 1 8.6725 7.6814 1.8491 38 1 3.2278 8.2109 2.9781 39 1 4.5385 7.4919 0.6499 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475094468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:04 Heat of formation + Delta-G solvation = -41.125064 kcal Electronic energy + Delta-G solvation = -24666.549357 eV Core-core repulsion = 20920.047872 eV Total energy + Delta-G solvation = -3746.501485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.064 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.62793 -38.34486 -37.77595 -37.33110 -36.75624 -35.81747 -35.65818 -32.91720 -32.07589 -31.23685 -29.20425 -27.77281 -24.78616 -23.57187 -23.07949 -22.37954 -20.32807 -19.59547 -18.96418 -18.70787 -18.17040 -17.32765 -17.23484 -16.65754 -16.21953 -16.09683 -15.44507 -15.25312 -15.11965 -14.95071 -14.49365 -14.30167 -14.13645 -13.88439 -13.68808 -13.25610 -13.12163 -13.07086 -12.98259 -12.92836 -12.77285 -12.59481 -12.28605 -12.15863 -12.00572 -11.82544 -11.74060 -11.54138 -11.26672 -11.13860 -10.94961 -10.87708 -10.29043 -9.87945 -9.46148 -8.93843 -6.73028 -0.31961 0.30823 0.85293 1.20197 1.36243 1.42971 1.51844 1.89322 1.94426 2.09576 2.22161 2.44167 2.87698 3.37425 3.50655 3.65155 3.94392 4.05926 4.21464 4.27488 4.41586 4.51058 4.66767 4.75277 4.79228 4.82838 4.89505 4.92526 4.95704 5.06460 5.16570 5.23276 5.23952 5.34782 5.39756 5.43201 5.53732 5.79799 6.00189 6.24950 6.31214 6.57595 6.63354 6.73814 8.00075 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.004042 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.562358 B = 6925.602171 C = 9193.578385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.112 4.112 5 C -0.120 4.120 6 C 0.104 3.896 7 N -1.106 6.106 8 S 2.722 3.278 9 O -0.991 6.991 10 O -0.999 6.999 11 C -0.807 4.807 12 C 0.005 3.995 13 C -0.251 4.251 14 C 0.114 3.886 15 C -0.448 4.448 16 H 0.100 0.900 17 C 0.035 3.965 18 N -0.786 5.786 19 Si 0.992 3.008 20 H -0.261 1.261 21 H -0.264 1.264 22 H -0.251 1.251 23 C -0.191 4.191 24 C 0.062 3.938 25 Cl -0.077 7.077 26 H 0.240 0.760 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.426 0.574 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.302 0.698 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 -10.049 -0.323 11.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.022 4.022 7 N -0.867 5.867 8 S 2.815 3.185 9 O -0.980 6.980 10 O -0.990 6.990 11 C -0.899 4.899 12 C -0.015 4.015 13 C -0.271 4.271 14 C 0.110 3.890 15 C -0.474 4.474 16 H 0.118 0.882 17 C -0.186 4.186 18 N -0.408 5.408 19 Si 0.811 3.189 20 H -0.186 1.186 21 H -0.188 1.188 22 H -0.174 1.174 23 C -0.212 4.212 24 C 0.034 3.966 25 Cl -0.048 7.048 26 H 0.256 0.744 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.263 0.737 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.412 -10.092 -1.155 11.075 hybrid contribution -0.792 0.822 0.948 1.484 sum -5.205 -9.270 -0.208 10.633 Atomic orbital electron populations 1.25702 0.97048 1.00143 1.00872 1.23840 0.95783 1.01124 1.00850 1.18815 0.83785 0.97694 1.04410 1.21432 0.94841 0.96497 1.02290 1.21814 0.94990 0.94891 1.04159 1.22137 0.78310 0.99823 1.01887 1.55180 1.15643 1.35899 1.80014 1.00456 0.71695 0.72906 0.73417 1.93509 1.78998 1.85600 1.39943 1.93454 1.33058 1.85141 1.87301 1.29549 0.99356 1.28714 1.32264 1.20469 0.96702 0.93491 0.90858 1.21355 0.97428 1.01243 1.07113 1.18082 0.91520 0.90813 0.88615 1.20307 0.96426 1.06487 1.24168 0.88195 1.27036 0.95322 1.02638 0.93621 1.69821 1.06865 1.33983 1.30142 0.85028 0.79314 0.75841 0.78745 1.18552 1.18782 1.17437 1.21274 1.00925 0.98547 1.00472 1.20253 0.87354 0.95157 0.93805 1.98313 1.54464 1.78664 1.73374 0.74351 0.87975 0.88202 0.92214 0.91998 0.89320 0.89412 0.91988 0.91193 0.73721 0.84652 0.86040 0.88702 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.19 19.25 74.32 1.43 -2.76 16 2 C -0.22 -4.51 13.34 31.12 0.42 -4.09 16 3 C -0.01 -0.18 5.70 28.79 0.16 -0.01 16 4 C -0.11 -2.22 5.17 30.59 0.16 -2.06 16 5 C -0.12 -2.32 5.36 30.59 0.16 -2.16 16 6 C 0.10 2.94 4.10 86.38 0.35 3.29 16 7 N -1.11 -32.26 6.00 -187.49 -1.12 -33.38 16 8 S 2.72 103.71 5.44 -56.49 -0.31 103.41 16 9 O -0.99 -42.10 15.94 -128.00 -2.04 -44.14 16 10 O -1.00 -40.35 16.94 -128.00 -2.17 -42.52 16 11 C -0.81 -35.31 5.91 22.48 0.13 -35.17 16 12 C 0.00 0.20 9.52 22.22 0.21 0.42 16 13 C -0.25 -11.50 9.79 22.73 0.22 -11.27 16 14 C 0.11 5.64 5.57 -21.30 -0.12 5.52 16 15 C -0.45 -21.10 9.05 23.46 0.21 -20.88 16 16 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 17 C 0.03 1.52 5.14 85.26 0.44 1.96 16 18 N -0.79 -35.93 10.96 21.83 0.24 -35.69 16 19 Si 0.99 32.70 29.60 68.60 2.03 34.73 16 20 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 21 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 22 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 23 C -0.19 -9.47 8.47 22.75 0.19 -9.28 16 24 C 0.06 2.86 6.08 22.27 0.14 2.99 16 25 Cl -0.08 -3.04 20.53 -2.72 -0.06 -3.10 16 26 H 0.24 2.79 7.80 -4.41 -0.03 2.75 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.06 1.96 6.14 -2.39 -0.01 1.94 16 34 H 0.07 2.14 5.86 -2.39 -0.01 2.12 16 35 H 0.43 9.61 8.65 -96.75 -0.84 8.77 16 36 H 0.14 5.29 7.31 -2.91 -0.02 5.26 16 37 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 38 H 0.30 12.24 8.30 -92.71 -0.77 11.48 16 39 H 0.12 6.19 6.16 -2.91 -0.02 6.17 16 Total: -1.00 -61.84 354.22 0.93 -60.90 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.25 Total: 33.32 kcal Atomic # 6 Polarization: -77.63 SS G_CDS: 4.11 Total: -73.52 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -0.89 Total: -69.08 kcal Atomic # 8 Polarization: -82.45 SS G_CDS: -4.21 Total: -86.66 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 2.03 Total: 34.73 kcal Atomic # 16 Polarization: 103.71 SS G_CDS: -0.31 Total: 103.41 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.06 Total: -3.10 kcal Total: -61.84 0.93 -60.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475094468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.778 kcal (2) G-P(sol) polarization free energy of solvation -61.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds