Wall clock time and date at job start Sat Apr 11 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 119.99910 * 2 1 4 4 H 1.48494 * 109.47093 * 264.99016 * 3 2 1 5 5 H 1.48502 * 109.47338 * 24.99388 * 3 2 1 6 6 H 1.48506 * 109.47224 * 144.99174 * 3 2 1 7 7 C 1.38947 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99804 * 348.94244 * 7 2 1 9 9 N 1.36899 * 120.00049 * 168.94810 * 7 2 1 10 10 C 1.34777 * 119.99983 * 136.09875 * 9 7 2 11 11 O 1.21754 * 119.99739 * 175.14578 * 10 9 7 12 12 C 1.46315 * 119.99820 * 355.15185 * 10 9 7 13 13 C 1.36808 * 125.17787 * 173.34709 * 12 10 9 14 14 C 1.36794 * 114.68809 * 179.78633 * 13 12 10 15 15 C 1.36457 * 114.79482 * 0.49567 * 14 13 12 16 16 C 1.47854 * 125.13530 * 179.72886 * 15 14 13 17 17 N 1.34223 * 126.70718 * 359.66304 * 16 15 14 18 18 N 1.28986 * 107.24814 * 179.89523 * 17 16 15 19 19 N 1.28717 * 109.00139 * 0.37465 * 18 17 16 20 20 H 0.96997 * 125.31488 * 179.73576 * 19 18 17 21 21 N 1.28869 * 109.37179 * 359.76510 * 19 18 17 22 22 S 1.75832 * 109.72355 * 359.73237 * 15 14 13 23 23 C 1.39676 * 119.99725 * 316.37683 * 9 7 2 24 24 C 1.38993 * 120.07871 * 123.63941 * 23 9 7 25 25 C 1.38074 * 119.91547 * 179.74383 * 24 23 9 26 26 C 1.38322 * 120.08116 * 0.52330 * 25 24 23 27 27 C 1.38316 * 120.15717 * 359.72684 * 26 25 24 28 28 C 1.38068 * 120.08656 * 0.02562 * 27 26 25 29 29 H 0.97001 * 119.99678 * 359.97438 * 1 2 3 30 30 H 1.07997 * 122.65484 * 359.97438 * 13 12 10 31 31 H 1.07991 * 122.59928 * 180.22987 * 14 13 12 32 32 H 1.07997 * 120.04077 * 359.97321 * 24 23 9 33 33 H 1.08002 * 119.96149 * 180.25029 * 25 24 23 34 34 H 1.07997 * 119.91740 * 179.70513 * 26 25 24 35 35 H 1.08005 * 119.95314 * 179.97438 * 27 26 25 36 36 H 1.08001 * 120.04267 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.6014 1.9853 -1.3947 5 1 1.3966 2.6810 0.5916 6 1 3.4887 1.4731 0.8032 7 6 2.0088 -1.2033 -0.0005 8 1 1.4838 -2.1300 0.1784 9 7 3.3588 -1.2142 -0.2278 10 6 4.1644 -1.9795 0.5349 11 8 5.3518 -2.0580 0.2775 12 6 3.6120 -2.7159 1.6722 13 6 4.2997 -3.6195 2.4351 14 6 3.5737 -4.1802 3.4499 15 6 2.2794 -3.7555 3.5301 16 6 1.2937 -4.2147 4.5318 17 7 1.5002 -5.1132 5.5073 18 7 0.3940 -5.2299 6.1603 19 7 -0.4879 -4.4549 5.6326 20 1 -1.4043 -4.3598 5.9360 21 7 0.0366 -3.8254 4.6380 22 16 1.9611 -2.5799 2.2619 23 6 3.9018 -0.4277 -1.2464 24 6 4.8965 0.4987 -0.9561 25 6 5.4346 1.2706 -1.9665 26 6 4.9774 1.1306 -3.2644 27 6 3.9841 0.2134 -3.5561 28 6 3.4448 -0.5656 -2.5518 29 1 -0.4850 0.8401 0.0004 30 1 5.3347 -3.8681 2.2526 31 1 3.9913 -4.9059 4.1320 32 1 5.2506 0.6119 0.0579 33 1 6.2104 1.9878 -1.7424 34 1 5.3969 1.7391 -4.0519 35 1 3.6292 0.1070 -4.5706 36 1 2.6688 -1.2813 -2.7802 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:18 Heat of formation + Delta-G solvation = 167.761700 kcal Electronic energy + Delta-G solvation = -26078.331175 eV Core-core repulsion = 22272.072957 eV Total energy + Delta-G solvation = -3806.258218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.069 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.25388 -39.99668 -37.95092 -36.74869 -35.11697 -34.12992 -33.14832 -32.49139 -30.43260 -30.01081 -28.54400 -25.72789 -24.99854 -24.42435 -22.70894 -22.14778 -21.98165 -20.11605 -19.51448 -18.66260 -17.72929 -17.27164 -16.98097 -16.18261 -15.60816 -15.49619 -14.87011 -14.83473 -14.20587 -13.93305 -13.68153 -13.58067 -13.08841 -12.85419 -12.78808 -12.51584 -12.41326 -12.26306 -12.24804 -11.59881 -11.25766 -11.22346 -11.15950 -10.99204 -10.97668 -10.73836 -10.59234 -10.34494 -9.94173 -9.34584 -9.19104 -8.76563 -8.36968 -8.01558 -7.83820 -7.65205 -6.87373 -4.66409 0.66091 1.26485 1.81754 1.92416 2.14087 2.31378 2.37776 2.68174 3.02450 3.10458 3.14427 3.21055 3.87206 3.92718 3.98153 4.00702 4.30286 4.56939 4.71289 5.38293 5.42050 5.50542 5.54665 5.60864 5.66646 5.86838 5.94899 6.01536 6.08531 6.20973 6.43655 6.50549 6.52520 6.72311 6.81916 6.87808 6.98344 7.00564 7.11644 7.43626 7.61182 7.87478 8.28994 8.47077 8.84350 9.22467 10.14482 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.003749 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.823741 B = 7466.592696 C = 8406.428589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.093 3.907 3 Si 0.868 3.132 4 H -0.253 1.253 5 H -0.284 1.284 6 H -0.252 1.252 7 C -0.356 4.356 8 H 0.123 0.877 9 N -0.421 5.421 10 C 0.554 3.446 11 O -0.561 6.561 12 C -0.221 4.221 13 C -0.099 4.099 14 C -0.096 4.096 15 C -0.224 4.224 16 C 0.266 3.734 17 N -0.271 5.271 18 N -0.060 5.060 19 N -0.232 5.232 20 H 0.473 0.527 21 N -0.295 5.295 22 S 0.357 5.643 23 C 0.158 3.842 24 C -0.127 4.127 25 C -0.115 4.115 26 C -0.142 4.142 27 C -0.114 4.114 28 C -0.113 4.113 29 H 0.286 0.714 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 -1.428 3.045 3.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.123 4.123 3 Si 0.692 3.308 4 H -0.178 1.178 5 H -0.210 1.210 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.139 0.861 9 N -0.136 5.136 10 C 0.345 3.655 11 O -0.444 6.444 12 C -0.344 4.344 13 C -0.132 4.132 14 C -0.131 4.131 15 C -0.344 4.344 16 C -0.014 4.014 17 N -0.145 5.145 18 N -0.055 5.055 19 N -0.077 5.077 20 H 0.327 0.673 21 N -0.147 5.147 22 S 0.634 5.366 23 C 0.066 3.934 24 C -0.148 4.148 25 C -0.134 4.134 26 C -0.161 4.161 27 C -0.133 4.133 28 C -0.133 4.133 29 H 0.097 0.903 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.663 -0.957 3.128 3.670 hybrid contribution 0.890 0.293 0.361 1.004 sum -0.773 -0.664 3.489 3.635 Atomic orbital electron populations 1.69652 1.06291 1.29581 1.40101 1.25455 0.95276 0.99085 0.92435 0.86924 0.80504 0.82062 0.81265 1.17764 1.20999 1.17623 1.19085 0.80652 0.96087 1.53117 0.86057 1.41237 1.07238 1.39286 1.25865 1.17350 0.85228 0.81598 0.81293 1.90744 1.15150 1.67043 1.71490 1.24658 0.99878 1.06043 1.03863 1.20229 1.01180 0.96943 0.94829 1.20115 0.91812 1.01771 0.99427 1.23721 0.95587 1.10369 1.04736 1.22673 0.89143 0.94039 0.95530 1.76146 1.15232 1.16947 1.06175 1.78818 0.94187 1.12715 1.19788 1.47658 1.15206 1.26021 1.18836 0.67304 1.75169 1.10381 1.20829 1.08356 1.86322 1.05017 1.31677 1.13619 1.17825 0.94385 0.92688 0.88501 1.21203 0.98075 0.95654 0.99824 1.20865 0.99960 0.99666 0.92879 1.20980 0.98721 1.00003 0.96361 1.20927 0.97140 0.96554 0.98656 1.21155 1.00925 1.00172 0.91059 0.90343 0.83758 0.84556 0.86110 0.86404 0.86650 0.86274 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.08 13.96 55.50 0.77 -19.30 16 2 C 0.09 2.20 5.44 -17.47 -0.09 2.11 16 3 Si 0.87 19.23 24.00 -169.99 -4.08 15.15 16 4 H -0.25 -5.59 7.08 56.52 0.40 -5.19 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.25 -5.64 5.95 56.52 0.34 -5.30 16 7 C -0.36 -8.34 6.85 -15.03 -0.10 -8.45 16 8 H 0.12 2.92 5.85 -35.77 -0.21 2.71 16 9 N -0.42 -9.68 2.29 -60.47 -0.14 -9.82 16 10 C 0.55 12.73 7.37 -13.01 -0.10 12.63 16 11 O -0.56 -13.74 16.14 5.14 0.08 -13.66 16 12 C -0.22 -4.54 6.26 -36.85 -0.23 -4.77 16 13 C -0.10 -1.78 9.89 -40.62 -0.40 -2.18 16 14 C -0.10 -1.61 10.09 -40.75 -0.41 -2.02 16 15 C -0.22 -3.98 6.48 -36.29 -0.24 -4.22 16 16 C 0.27 4.51 8.16 -156.23 -1.27 3.24 16 17 N -0.27 -4.41 12.52 32.08 0.40 -4.00 16 18 N -0.06 -0.82 13.46 60.35 0.81 -0.01 16 19 N -0.23 -2.68 7.89 60.35 0.48 -2.20 16 20 H 0.47 2.96 8.96 -340.33 -3.05 -0.09 16 21 N -0.30 -4.54 12.41 32.09 0.40 -4.14 16 22 S 0.36 6.96 18.64 -107.50 -2.00 4.96 16 23 C 0.16 3.47 2.56 -83.73 -0.21 3.25 16 24 C -0.13 -2.64 5.85 -39.36 -0.23 -2.87 16 25 C -0.12 -2.01 10.04 -39.61 -0.40 -2.41 16 26 C -0.14 -2.29 10.04 -39.52 -0.40 -2.69 16 27 C -0.11 -1.93 10.04 -39.61 -0.40 -2.33 16 28 C -0.11 -2.26 9.38 -39.36 -0.37 -2.63 16 29 H 0.29 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.14 2.43 8.04 -52.49 -0.42 2.01 16 31 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 32 H 0.12 2.56 7.47 -52.49 -0.39 2.17 16 33 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.13 2.53 8.05 -52.49 -0.42 2.11 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -28.94 328.82 -8.56 -37.50 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.39 Total: 3.89 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -4.85 Total: -13.32 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 2.72 Total: -39.48 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.66 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.08 Total: 15.15 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -2.00 Total: 4.96 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.94 -8.56 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.262 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds