Wall clock time and date at job start Sat Apr 11 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 S 1.65601 * 119.99506 * 179.97438 * 14 12 11 16 16 O 1.42107 * 104.27533 * 181.06465 * 15 14 12 17 17 O 1.42098 * 104.27954 * 308.92084 * 15 14 12 18 18 C 1.81400 * 104.45278 * 64.99689 * 15 14 12 19 19 C 1.50698 * 109.47118 * 179.97438 * 18 15 14 20 20 O 1.20819 * 120.00264 * 0.02562 * 19 18 15 21 21 O 1.34230 * 119.99779 * 179.97438 * 19 18 15 22 22 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 23 23 C 1.38237 * 120.00118 * 54.45011 * 22 9 7 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 9 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 234.71903 * 22 9 7 28 28 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 29 29 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 30 30 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 31 31 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.46548 * 299.99711 * 18 15 14 33 33 H 1.08999 * 109.47446 * 59.99447 * 18 15 14 34 34 H 0.96705 * 116.99817 * 180.02562 * 21 19 18 35 35 H 1.08005 * 119.99967 * 359.97438 * 23 22 9 36 36 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 37 37 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 38 38 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 39 39 H 1.07999 * 120.00249 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 16 3.7056 -3.4829 4.4703 16 8 4.5774 -4.5086 4.9254 17 8 4.1531 -2.1392 4.3540 18 6 2.1239 -3.5527 5.3557 19 6 2.3375 -3.1675 6.7968 20 8 3.4431 -2.8753 7.1866 21 8 1.2991 -3.1480 7.6473 22 6 0.8003 -2.9670 -1.2150 23 6 1.7146 -3.1134 -2.2414 24 6 1.2947 -3.5503 -3.4839 25 6 -0.0409 -3.8321 -3.7025 26 6 -0.9560 -3.6808 -2.6775 27 6 -0.5353 -3.2480 -1.4338 28 1 -0.4851 -0.8361 -0.0817 29 1 1.6797 -4.5125 0.7692 30 1 3.0976 -3.6172 0.1724 31 1 3.6919 -4.7442 2.5471 32 1 1.4188 -2.8608 4.8949 33 1 1.7241 -4.5655 5.3061 34 1 1.4853 -2.8941 8.5617 35 1 2.7574 -2.8893 -2.0718 36 1 2.0097 -3.6688 -4.2846 37 1 -0.3693 -4.1709 -4.6739 38 1 -1.9993 -3.9013 -2.8481 39 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062139.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:04 Heat of formation + Delta-G solvation = -174.120157 kcal Electronic energy + Delta-G solvation = -27636.121308 eV Core-core repulsion = 23443.143559 eV Total energy + Delta-G solvation = -4192.977750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69414 -39.85027 -38.49918 -37.23282 -36.70514 -36.08652 -34.58274 -34.17588 -31.46669 -31.14622 -30.20651 -29.15834 -25.43742 -23.26942 -22.78828 -21.85809 -21.36823 -19.93671 -19.61871 -18.85153 -17.97432 -17.33730 -17.11621 -16.86738 -16.58817 -16.18797 -15.93140 -15.26910 -15.08583 -14.42450 -14.23488 -13.88734 -13.65648 -13.59017 -13.40583 -13.03353 -12.82200 -12.57598 -12.38133 -12.23637 -12.08734 -12.04739 -12.02400 -11.67870 -11.44461 -11.35661 -11.17461 -10.75627 -10.61205 -10.54200 -10.27878 -10.07519 -9.84242 -9.76508 -8.76079 -8.39229 -8.23176 -7.75397 -6.32655 -4.04366 -0.23264 1.61785 2.09350 2.12285 2.20759 2.43680 2.71466 3.48706 3.56326 3.57105 3.70390 3.93853 4.42188 4.51683 4.55139 4.60403 4.80110 4.91149 5.13677 5.41803 5.51749 5.53171 5.63983 5.75002 5.82558 5.95976 6.02513 6.19933 6.27411 6.42874 6.66384 6.76247 6.85794 7.03319 7.13644 7.26297 7.29574 7.58277 7.74806 7.94679 8.08096 8.40692 8.86324 9.64788 11.06438 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.003661 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.155960 B = 7646.681267 C = 8541.390543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.036 3.964 3 Si 1.055 2.945 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.577 4.577 8 H 0.050 0.950 9 C 0.069 3.931 10 H 0.053 0.947 11 C -0.119 4.119 12 C 0.528 3.472 13 O -0.453 6.453 14 N -1.061 6.061 15 S 2.626 3.374 16 O -0.936 6.936 17 O -0.902 6.902 18 C -0.651 4.651 19 C 0.521 3.479 20 O -0.509 6.509 21 O -0.499 6.499 22 C -0.035 4.035 23 C -0.106 4.106 24 C -0.129 4.129 25 C -0.150 4.150 26 C -0.125 4.125 27 C -0.129 4.129 28 H 0.271 0.729 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.432 0.568 32 H 0.184 0.816 33 H 0.172 0.828 34 H 0.420 0.580 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 -13.018 5.866 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.170 4.170 3 Si 0.884 3.116 4 H -0.209 1.209 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.615 4.615 8 H 0.068 0.932 9 C 0.050 3.950 10 H 0.071 0.929 11 C -0.161 4.161 12 C 0.315 3.685 13 O -0.320 6.320 14 N -0.830 5.830 15 S 2.714 3.286 16 O -0.926 6.926 17 O -0.892 6.892 18 C -0.774 4.774 19 C 0.362 3.638 20 O -0.398 6.398 21 O -0.311 6.311 22 C -0.036 4.036 23 C -0.124 4.124 24 C -0.147 4.147 25 C -0.168 4.168 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.268 0.732 32 H 0.202 0.798 33 H 0.189 0.811 34 H 0.280 0.720 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.347 -10.349 6.341 12.211 hybrid contribution -0.314 -2.008 0.154 2.038 sum 1.033 -12.356 6.495 13.997 Atomic orbital electron populations 1.70768 1.06947 1.30994 1.45027 1.25585 0.96315 1.02300 0.92827 0.83748 0.75291 0.75909 0.76702 1.20883 1.20987 1.21557 1.21596 0.94073 0.90545 1.55247 0.93204 1.17943 0.95512 0.92883 0.88710 0.92929 1.21867 1.02947 1.00829 0.90442 1.21144 0.75771 0.82010 0.89541 1.90917 1.48475 1.20721 1.71847 1.55382 1.59330 1.35829 1.32426 1.05020 0.74867 0.75203 0.73559 1.93627 1.59262 1.59405 1.80329 1.93690 1.75967 1.35876 1.83621 1.30974 1.30632 1.14258 1.01582 1.21583 0.82206 0.73063 0.86977 1.90885 1.25244 1.45301 1.78407 1.84484 1.39687 1.81201 1.25747 1.20761 0.92577 0.91651 0.98624 1.20945 0.99998 0.98981 0.92470 1.21033 0.95613 1.01008 0.97089 1.20851 0.93756 1.03847 0.98392 1.20972 0.98556 1.00965 0.93779 1.21058 0.96057 1.00747 0.96889 0.91796 0.90128 0.88778 0.73214 0.79817 0.81077 0.72021 0.86533 0.87364 0.87530 0.87406 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.56 55.43 0.75 -25.47 16 2 C 0.04 0.99 5.45 -17.83 -0.10 0.90 16 3 Si 1.06 25.70 29.91 -169.99 -5.08 20.62 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.58 -14.76 6.35 -34.44 -0.22 -14.98 16 8 H 0.05 1.28 7.82 -52.48 -0.41 0.87 16 9 C 0.07 1.48 1.23 -92.92 -0.11 1.37 16 10 H 0.05 1.25 6.59 -51.93 -0.34 0.91 16 11 C -0.12 -1.93 4.95 -27.88 -0.14 -2.07 16 12 C 0.53 8.86 7.32 -10.99 -0.08 8.78 16 13 O -0.45 -9.64 13.12 -11.58 -0.15 -9.79 16 14 N -1.06 -13.17 5.60 31.22 0.17 -13.00 16 15 S 2.63 37.92 4.25 -107.50 -0.46 37.46 16 16 O -0.94 -14.21 18.08 -57.55 -1.04 -15.25 16 17 O -0.90 -17.76 17.04 -64.80 -1.10 -18.86 16 18 C -0.65 -7.21 6.48 36.00 0.23 -6.98 16 19 C 0.52 6.36 8.35 36.00 0.30 6.66 16 20 O -0.51 -7.80 16.62 -18.76 -0.31 -8.11 16 21 O -0.50 -4.44 13.42 -39.26 -0.53 -4.97 16 22 C -0.04 -0.71 4.53 -104.62 -0.47 -1.19 16 23 C -0.11 -1.99 8.90 -39.58 -0.35 -2.34 16 24 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 25 C -0.15 -2.42 10.05 -39.58 -0.40 -2.81 16 26 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 27 C -0.13 -2.45 9.18 -39.58 -0.36 -2.81 16 28 H 0.27 7.63 6.24 -40.82 -0.25 7.38 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.41 7.97 -51.93 -0.41 1.00 16 31 H 0.43 3.51 8.79 -34.47 -0.30 3.20 16 32 H 0.18 2.09 7.19 -51.92 -0.37 1.71 16 33 H 0.17 1.12 8.14 -51.92 -0.42 0.69 16 34 H 0.42 1.69 9.10 45.56 0.41 2.11 16 35 H 0.12 2.13 7.85 -52.48 -0.41 1.72 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 2.04 7.95 -52.49 -0.42 1.62 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -38.54 355.76 -8.31 -46.85 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.42 Total: 5.68 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.50 Total: -20.53 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.93 Total: -38.47 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -3.14 Total: -56.98 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Atomic # 16 Polarization: 37.92 SS G_CDS: -0.46 Total: 37.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.54 -8.31 -46.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062139.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.273 kcal (2) G-P(sol) polarization free energy of solvation -38.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds