Wall clock time and date at job start Sat Apr 11 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99759 * 90.00349 * 10 9 7 12 12 C 1.52998 * 109.47337 * 89.99861 * 11 10 9 13 13 F 1.39897 * 109.47420 * 59.99775 * 12 11 10 14 14 F 1.39903 * 109.46967 * 180.02562 * 12 11 10 15 15 F 1.39901 * 109.47155 * 299.99674 * 12 11 10 16 16 C 1.34771 * 120.00084 * 270.00021 * 10 9 7 17 17 O 1.21280 * 119.99939 * 359.97438 * 16 10 9 18 18 C 1.50696 * 119.99966 * 180.02562 * 16 10 9 19 19 C 1.52998 * 109.47192 * 179.97438 * 18 16 10 20 20 H 1.09003 * 109.41132 * 55.14398 * 19 18 16 21 21 C 1.49571 * 109.41767 * 295.34072 * 19 18 16 22 22 C 1.30320 * 119.15871 * 258.52167 * 21 19 18 23 23 S 1.77800 * 107.56751 * 359.67049 * 22 21 19 24 24 O 1.42103 * 105.57415 * 230.90501 * 23 22 21 25 25 O 1.42095 * 105.60801 * 100.44003 * 23 22 21 26 26 C 1.54945 * 109.41386 * 174.99798 * 19 18 16 27 27 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 29 29 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 30 30 H 1.09001 * 109.47057 * 210.00204 * 11 10 9 31 31 H 1.08999 * 109.47333 * 329.99764 * 11 10 9 32 32 H 1.09004 * 109.47246 * 300.00009 * 18 16 10 33 33 H 1.08997 * 109.47440 * 59.99942 * 18 16 10 34 34 H 1.07998 * 120.42210 * 78.54002 * 21 19 18 35 35 H 1.08008 * 126.22157 * 179.69313 * 22 21 19 36 36 H 1.09007 * 111.33871 * 212.66971 * 26 19 18 37 37 H 1.08996 * 111.34105 * 337.32643 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.6793 -4.1693 1.2693 12 6 1.7487 -5.3005 1.7109 13 9 1.7388 -6.3038 0.7360 14 9 2.2030 -5.8317 2.9228 15 9 0.4530 -4.8001 1.8782 16 6 2.6413 -4.1247 -1.1666 17 8 2.2469 -3.6641 -2.2169 18 6 3.6203 -5.2704 -1.1666 19 6 3.9513 -5.6584 -2.6090 20 1 4.3112 -4.7811 -3.1466 21 6 2.7199 -6.1799 -3.2788 22 6 2.5693 -7.4669 -3.4177 23 16 4.0006 -8.2536 -2.7151 24 8 4.4705 -9.1510 -3.7117 25 8 3.5976 -8.7016 -1.4282 26 6 5.0513 -6.7496 -2.6093 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6243 -2.5567 0.8903 30 1 3.6888 -4.5591 1.1390 31 1 2.6870 -3.3876 2.0289 32 1 4.5329 -4.9686 -0.6525 33 1 3.1796 -6.1248 -0.6530 34 1 1.9652 -5.4986 -3.6431 35 1 1.7280 -7.9652 -3.8766 36 1 5.7010 -6.6577 -3.4798 37 1 5.6279 -6.7319 -1.6845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649714603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:41 Heat of formation + Delta-G solvation = -227.521668 kcal Electronic energy + Delta-G solvation = -29132.288419 eV Core-core repulsion = 24395.138266 eV Total energy + Delta-G solvation = -4737.150154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.074 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.88844 -47.45384 -47.32066 -39.90991 -37.59459 -37.08141 -36.01870 -35.43264 -32.94481 -31.59953 -29.51606 -28.88363 -26.80431 -24.12676 -23.37519 -22.66964 -20.50986 -19.24235 -18.93721 -18.32762 -18.23087 -17.85297 -17.35555 -16.69542 -16.26578 -16.09042 -15.70855 -15.29399 -14.96508 -14.60930 -14.46428 -14.23859 -14.20786 -13.87533 -13.79187 -13.54223 -13.48553 -13.40463 -13.07134 -12.69352 -12.56157 -12.35627 -12.27084 -12.16732 -12.13587 -12.02769 -11.58038 -11.38221 -11.06666 -10.79819 -10.72676 -10.56978 -10.33508 -10.18718 -9.88790 -9.33802 -8.58733 -8.19014 -6.19976 -4.26634 -0.08492 1.28982 2.48980 2.70036 3.09321 3.21093 3.26023 3.28170 3.30677 3.41975 3.83370 4.00618 4.05596 4.14436 4.20069 4.30873 4.43032 4.54324 4.79912 4.93833 5.04178 5.09122 5.15170 5.18339 5.35298 5.44677 5.50254 5.60949 5.78055 6.09710 6.67990 7.11205 7.24135 7.73399 7.89871 8.01243 8.52189 8.77455 9.39219 10.88351 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.004055 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.852874 B = 6902.667370 C = 8193.474926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.242 3.758 10 N -0.593 5.593 11 C 0.070 3.930 12 C 0.426 3.574 13 F -0.181 7.181 14 F -0.186 7.186 15 F -0.174 7.174 16 C 0.515 3.485 17 O -0.521 6.521 18 C -0.165 4.165 19 C -0.068 4.068 20 H 0.128 0.872 21 C -0.024 4.024 22 C -0.679 4.679 23 S 2.437 3.563 24 O -0.942 6.942 25 O -0.928 6.928 26 C -0.575 4.575 27 H 0.266 0.734 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.151 0.849 35 H 0.181 0.819 36 H 0.149 0.851 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.786 -12.610 -0.330 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.124 3.876 10 N -0.324 5.324 11 C -0.058 4.058 12 C 0.370 3.630 13 F -0.163 7.163 14 F -0.167 7.167 15 F -0.155 7.155 16 C 0.302 3.698 17 O -0.396 6.396 18 C -0.205 4.205 19 C -0.088 4.088 20 H 0.146 0.854 21 C -0.044 4.044 22 C -0.787 4.787 23 S 2.618 3.382 24 O -0.939 6.939 25 O -0.926 6.926 26 C -0.705 4.705 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.169 0.831 35 H 0.199 0.801 36 H 0.168 0.832 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.499 -13.173 -0.659 16.254 hybrid contribution -0.147 1.729 -0.062 1.737 sum 9.351 -11.443 -0.721 14.796 Atomic orbital electron populations 1.69925 1.06041 1.27339 1.49456 1.24929 0.94878 0.99308 0.94754 0.86469 0.79611 0.82878 0.78263 1.20521 1.21053 1.19871 1.21345 0.93336 0.90369 1.52368 0.92222 1.19548 0.87111 0.81508 0.99476 1.48193 1.46381 1.35297 1.02540 1.22677 0.96281 0.95064 0.91739 1.21681 0.82056 0.84327 0.74910 1.93131 1.96438 1.64013 1.62720 1.93167 1.88897 1.87980 1.46707 1.93226 1.40077 1.87018 1.95225 1.20156 0.82109 0.83374 0.84207 1.90685 1.57653 1.61084 1.30212 1.22301 1.01576 1.00402 0.96240 1.20503 0.90562 1.00462 0.97257 0.85364 1.23196 0.96645 0.96998 0.87564 1.32600 1.22224 1.07307 1.16533 1.07486 0.77989 0.77097 0.75610 1.93590 1.80783 1.60589 1.58927 1.93656 1.80362 1.78895 1.39642 1.30655 1.09823 1.17264 1.12770 0.92468 0.93222 0.94000 0.86916 0.84986 0.87128 0.86848 0.83120 0.80126 0.83247 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.82 9.39 -34.44 -0.32 -14.14 16 8 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 9 C 0.24 5.73 4.96 -5.19 -0.03 5.71 16 10 N -0.59 -10.88 2.37 -175.06 -0.42 -11.30 16 11 C 0.07 0.96 5.33 -4.04 -0.02 0.94 16 12 C 0.43 6.18 3.29 37.16 0.12 6.31 16 13 F -0.18 -2.75 14.29 2.25 0.03 -2.71 16 14 F -0.19 -2.46 17.32 2.25 0.04 -2.42 16 15 F -0.17 -2.99 16.23 2.25 0.04 -2.95 16 16 C 0.51 8.94 7.08 -10.99 -0.08 8.87 16 17 O -0.52 -10.82 13.99 5.56 0.08 -10.74 16 18 C -0.17 -1.97 3.52 -27.89 -0.10 -2.06 16 19 C -0.07 -0.70 2.34 -91.29 -0.21 -0.92 16 20 H 0.13 1.29 7.96 -51.93 -0.41 0.87 16 21 C -0.02 -0.29 8.43 -36.38 -0.31 -0.60 16 22 C -0.68 -7.60 11.04 29.21 0.32 -7.28 16 23 S 2.44 25.43 6.19 -107.50 -0.66 24.76 16 24 O -0.94 -12.42 18.02 -57.38 -1.03 -13.46 16 25 O -0.93 -12.57 18.02 -57.38 -1.03 -13.60 16 26 C -0.58 -3.97 7.26 38.18 0.28 -3.69 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 29 H 0.04 1.03 7.26 -51.93 -0.38 0.65 16 30 H 0.11 1.08 6.44 -51.93 -0.33 0.75 16 31 H 0.13 1.74 8.07 -51.93 -0.42 1.32 16 32 H 0.11 0.93 7.34 -51.93 -0.38 0.55 16 33 H 0.11 1.35 5.48 -51.93 -0.28 1.06 16 34 H 0.15 2.02 7.10 -52.49 -0.37 1.64 16 35 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.15 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.15 0.64 7.82 -51.93 -0.41 0.23 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -35.19 335.86 -6.39 -41.58 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -3.76 Total: -0.12 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.44 Total: -5.24 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.32 Total: -35.62 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.99 Total: -37.80 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 0.11 Total: -8.09 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 25.43 SS G_CDS: -0.66 Total: 24.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.19 -6.39 -41.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649714603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.938 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds