Wall clock time and date at job start Sat Apr 11 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99759 * 90.00349 * 10 9 7 12 12 C 1.52998 * 109.47337 * 89.99861 * 11 10 9 13 13 F 1.39897 * 109.47420 * 59.99775 * 12 11 10 14 14 F 1.39903 * 109.46967 * 180.02562 * 12 11 10 15 15 F 1.39901 * 109.47155 * 299.99674 * 12 11 10 16 16 C 1.34771 * 120.00084 * 270.00021 * 10 9 7 17 17 O 1.21280 * 119.99939 * 359.97438 * 16 10 9 18 18 C 1.50696 * 119.99966 * 180.02562 * 16 10 9 19 19 C 1.52998 * 109.47192 * 179.97438 * 18 16 10 20 20 H 1.09003 * 109.41132 * 55.14398 * 19 18 16 21 21 C 1.49571 * 109.41767 * 295.34072 * 19 18 16 22 22 C 1.30320 * 119.15871 * 258.52167 * 21 19 18 23 23 S 1.77800 * 107.56751 * 359.67049 * 22 21 19 24 24 O 1.42103 * 105.57415 * 230.90501 * 23 22 21 25 25 O 1.42095 * 105.60801 * 100.44003 * 23 22 21 26 26 C 1.54945 * 109.41386 * 174.99798 * 19 18 16 27 27 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 29 29 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 30 30 H 1.09001 * 109.47057 * 210.00204 * 11 10 9 31 31 H 1.08999 * 109.47333 * 329.99764 * 11 10 9 32 32 H 1.09004 * 109.47246 * 300.00009 * 18 16 10 33 33 H 1.08997 * 109.47440 * 59.99942 * 18 16 10 34 34 H 1.07998 * 120.42210 * 78.54002 * 21 19 18 35 35 H 1.08008 * 126.22157 * 179.69313 * 22 21 19 36 36 H 1.09007 * 111.33871 * 212.66971 * 26 19 18 37 37 H 1.08996 * 111.34105 * 337.32643 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.6793 -4.1693 1.2693 12 6 1.7487 -5.3005 1.7109 13 9 1.7388 -6.3038 0.7360 14 9 2.2030 -5.8317 2.9228 15 9 0.4530 -4.8001 1.8782 16 6 2.6413 -4.1247 -1.1666 17 8 2.2469 -3.6641 -2.2169 18 6 3.6203 -5.2704 -1.1666 19 6 3.9513 -5.6584 -2.6090 20 1 4.3112 -4.7811 -3.1466 21 6 2.7199 -6.1799 -3.2788 22 6 2.5693 -7.4669 -3.4177 23 16 4.0006 -8.2536 -2.7151 24 8 4.4705 -9.1510 -3.7117 25 8 3.5976 -8.7016 -1.4282 26 6 5.0513 -6.7496 -2.6093 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6243 -2.5567 0.8903 30 1 3.6888 -4.5591 1.1390 31 1 2.6870 -3.3876 2.0289 32 1 4.5329 -4.9686 -0.6525 33 1 3.1796 -6.1248 -0.6530 34 1 1.9652 -5.4986 -3.6431 35 1 1.7280 -7.9652 -3.8766 36 1 5.7010 -6.6577 -3.4798 37 1 5.6279 -6.7319 -1.6845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649714603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:41 Heat of formation + Delta-G solvation = -253.720863 kcal Electronic energy + Delta-G solvation = -29133.424502 eV Core-core repulsion = 24395.138266 eV Total energy + Delta-G solvation = -4738.286236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.074 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.07513 -48.61654 -48.55360 -41.17252 -38.59826 -38.00340 -36.94347 -36.85463 -34.86368 -32.56917 -30.96211 -29.88995 -28.31896 -25.39815 -24.59846 -24.06606 -21.46130 -20.43093 -19.84804 -19.52528 -19.40712 -19.11139 -18.49480 -18.17112 -17.58382 -17.34943 -16.79331 -16.44627 -16.13756 -16.00178 -15.56431 -15.49933 -15.34951 -14.99117 -14.88876 -14.78378 -14.70361 -14.56045 -14.24508 -13.98834 -13.69166 -13.54953 -13.33532 -13.28969 -13.14676 -13.07545 -12.96615 -12.82402 -12.57870 -12.49032 -12.18790 -11.75016 -11.62837 -11.45055 -11.04510 -10.73537 -10.63420 -9.77381 -8.21760 -6.36071 -0.85733 0.38425 1.41655 1.43168 1.45786 1.52984 1.67134 1.85057 2.02879 2.41216 2.61794 2.89021 2.99048 3.05166 3.11516 3.24173 3.36056 3.40805 3.59606 3.79047 4.03823 4.23358 4.35096 4.38768 4.53471 4.56375 4.63002 4.80875 4.87688 4.95149 5.21398 5.25774 5.41712 5.74221 6.02503 6.43791 6.73802 7.17258 7.36527 8.86450 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.004055 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.852874 B = 6902.667370 C = 8193.474926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.258 3.742 10 N -0.602 5.602 11 C 0.068 3.932 12 C 0.427 3.573 13 F -0.185 7.185 14 F -0.175 7.175 15 F -0.196 7.196 16 C 0.506 3.494 17 O -0.565 6.565 18 C -0.161 4.161 19 C -0.072 4.072 20 H 0.137 0.863 21 C -0.038 4.038 22 C -0.688 4.688 23 S 2.442 3.558 24 O -0.974 6.974 25 O -0.963 6.963 26 C -0.531 4.531 27 H 0.266 0.734 28 H 0.002 0.998 29 H 0.026 0.974 30 H 0.167 0.833 31 H 0.138 0.862 32 H 0.163 0.837 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.178 0.822 36 H 0.186 0.814 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.678 -12.603 0.548 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.138 3.862 10 N -0.333 5.333 11 C -0.058 4.058 12 C 0.371 3.629 13 F -0.167 7.167 14 F -0.156 7.156 15 F -0.178 7.178 16 C 0.295 3.705 17 O -0.444 6.444 18 C -0.200 4.200 19 C -0.091 4.091 20 H 0.155 0.845 21 C -0.058 4.058 22 C -0.794 4.794 23 S 2.627 3.373 24 O -0.971 6.971 25 O -0.960 6.960 26 C -0.664 4.664 27 H 0.074 0.926 28 H 0.020 0.980 29 H 0.044 0.956 30 H 0.185 0.815 31 H 0.156 0.844 32 H 0.180 0.820 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.196 0.804 36 H 0.204 0.796 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 13.388 -13.237 0.237 18.828 hybrid contribution -1.405 1.698 -0.351 2.231 sum 11.983 -11.540 -0.113 16.637 Atomic orbital electron populations 1.70066 1.07811 1.28141 1.50980 1.25853 0.95628 1.03128 0.94508 0.85413 0.78943 0.78392 0.78036 1.20830 1.20915 1.17896 1.21701 0.93775 0.91161 1.51159 0.91392 1.18910 0.87632 0.83317 0.96371 1.48066 1.45831 1.34396 1.05000 1.23053 0.98186 0.94890 0.89677 1.21808 0.81300 0.84549 0.75200 1.93129 1.96402 1.64209 1.62945 1.93188 1.88585 1.87831 1.45998 1.93189 1.41895 1.87356 1.95367 1.21207 0.82214 0.84059 0.83001 1.90669 1.59202 1.62740 1.31794 1.22446 1.01854 0.97686 0.98008 1.20574 0.90657 1.01818 0.96095 0.84497 1.23221 0.97497 0.96645 0.88468 1.32833 1.23110 1.07402 1.16049 1.07295 0.77771 0.78070 0.74160 1.93548 1.80950 1.62983 1.59660 1.93610 1.81266 1.80571 1.40564 1.30603 1.08238 1.10687 1.16900 0.92554 0.98031 0.95566 0.81545 0.84390 0.81971 0.86521 0.85834 0.80412 0.79638 0.78914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.94 13.29 21.45 0.28 -53.66 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.54 -27.91 9.39 25.60 0.24 -27.67 16 8 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 9 C 0.26 12.65 4.96 85.63 0.42 13.07 16 10 N -0.60 -21.66 2.37 -826.16 -1.96 -23.62 16 11 C 0.07 1.68 5.33 86.38 0.46 2.14 16 12 C 0.43 11.75 3.29 71.98 0.24 11.98 16 13 F -0.19 -5.34 14.29 44.97 0.64 -4.70 16 14 F -0.17 -4.20 17.32 44.97 0.78 -3.43 16 15 F -0.20 -6.83 16.23 44.97 0.73 -6.11 16 16 C 0.51 17.01 7.08 87.66 0.62 17.63 16 17 O -0.57 -24.01 13.99 -3.03 -0.04 -24.05 16 18 C -0.16 -3.21 3.52 29.85 0.11 -3.10 16 19 C -0.07 -1.24 2.34 -11.23 -0.03 -1.27 16 20 H 0.14 2.25 7.96 -2.39 -0.02 2.24 16 21 C -0.04 -0.90 8.43 26.00 0.22 -0.68 16 22 C -0.69 -15.40 11.04 68.48 0.76 -14.64 16 23 S 2.44 46.07 6.19 -56.49 -0.35 45.72 16 24 O -0.97 -24.44 18.02 -127.81 -2.30 -26.74 16 25 O -0.96 -24.50 18.02 -127.81 -2.30 -26.80 16 26 C -0.53 -4.44 7.26 72.65 0.53 -3.92 16 27 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.00 0.09 7.42 -2.38 -0.02 0.07 16 29 H 0.03 1.35 7.26 -2.39 -0.02 1.33 16 30 H 0.17 2.28 6.44 -2.39 -0.02 2.27 16 31 H 0.14 3.30 8.07 -2.39 -0.02 3.28 16 32 H 0.16 1.57 7.34 -2.38 -0.02 1.55 16 33 H 0.12 2.36 5.48 -2.39 -0.01 2.35 16 34 H 0.12 3.55 7.10 -2.91 -0.02 3.53 16 35 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 36 H 0.19 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.19 0.12 7.82 -2.39 -0.02 0.10 16 Total: -1.00 -82.08 335.86 2.66 -79.42 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.13 Total: 5.74 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 4.03 Total: -5.55 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -1.68 Total: -77.28 kcal Atomic # 8 Polarization: -72.94 SS G_CDS: -4.65 Total: -77.59 kcal Atomic # 9 Polarization: -16.38 SS G_CDS: 2.15 Total: -14.23 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 46.07 SS G_CDS: -0.35 Total: 45.72 kcal Total: -82.08 2.66 -79.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649714603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.300 kcal (2) G-P(sol) polarization free energy of solvation -82.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds