Wall clock time and date at job start Sat Apr 11 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99928 * 2 1 4 4 H 1.48500 * 109.46763 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47042 * 119.99351 * 3 2 1 6 6 H 1.48494 * 109.46878 * 239.99676 * 3 2 1 7 7 C 1.40049 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99824 * 4.66343 * 7 2 1 9 9 C 1.46369 * 120.00495 * 184.66042 * 7 2 1 10 10 O 1.21690 * 119.99722 * 6.24283 * 9 7 2 11 11 N 1.34775 * 120.00526 * 186.24101 * 9 7 2 12 12 C 1.48731 * 125.75019 * 0.02562 * 11 9 7 13 13 C 1.52786 * 103.30130 * 204.20584 * 12 11 9 14 14 H 1.09003 * 109.81626 * 74.28636 * 13 12 11 15 15 C 1.50844 * 117.89558 * 201.03213 * 13 12 11 16 16 C 1.53458 * 108.43633 * 186.93481 * 15 13 12 17 17 C 1.52640 * 112.14760 * 292.75357 * 16 15 13 18 18 S 1.82215 * 110.53146 * 59.33674 * 17 16 15 19 19 O 1.42105 * 108.90443 * 61.13799 * 18 17 16 20 20 O 1.42092 * 108.90687 * 193.07895 * 18 17 16 21 21 C 1.55576 * 100.58094 * 318.55915 * 13 12 11 22 22 C 1.52996 * 111.14696 * 284.46241 * 21 13 12 23 23 F 1.39903 * 109.46808 * 53.08035 * 22 21 13 24 24 F 1.39898 * 109.47492 * 173.07929 * 22 21 13 25 25 F 1.39902 * 109.47172 * 293.08127 * 22 21 13 26 26 C 1.48245 * 125.75645 * 179.72257 * 11 9 7 27 27 H 0.97008 * 119.99822 * 174.89258 * 1 2 3 28 28 H 1.09003 * 110.65346 * 322.66163 * 12 11 9 29 29 H 1.09007 * 110.65341 * 85.75098 * 12 11 9 30 30 H 1.08997 * 109.64548 * 306.61202 * 15 13 12 31 31 H 1.09000 * 109.64739 * 67.03969 * 15 13 12 32 32 H 1.09006 * 108.94350 * 53.43335 * 16 15 13 33 33 H 1.08996 * 108.95117 * 172.06545 * 16 15 13 34 34 H 1.08999 * 109.26297 * 179.61415 * 17 16 15 35 35 H 1.09005 * 109.26391 * 299.10202 * 17 16 15 36 36 H 1.08997 * 110.18018 * 302.64691 * 26 11 9 37 37 H 1.08996 * 110.18706 * 64.48309 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2756 2.7465 -0.0006 5 1 3.0943 1.6965 1.2126 6 1 3.0944 1.6964 -1.2124 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0751 9 6 3.4671 -1.2149 0.1035 10 8 4.0644 -0.1735 0.3027 11 7 4.1499 -2.3700 -0.0221 12 6 3.5530 -3.7101 -0.2667 13 6 4.6077 -4.6701 0.2815 14 1 4.5898 -4.6554 1.3713 15 6 4.5884 -6.0958 -0.2108 16 6 5.6124 -6.9027 0.5986 17 6 7.0464 -6.4662 0.3104 18 16 7.2709 -4.7032 0.7125 19 8 7.0156 -4.5106 2.0971 20 8 8.5010 -4.2576 0.1581 21 6 5.9085 -3.9901 -0.2341 22 6 6.1032 -4.2353 -1.7316 23 9 4.9474 -3.8528 -2.4209 24 9 7.1900 -3.4830 -2.1900 25 9 6.3501 -5.5944 -1.9534 26 6 5.6230 -2.5181 0.0539 27 1 -0.4850 -0.8368 -0.0748 28 1 2.6147 -3.8182 0.2774 29 1 3.4011 -3.8744 -1.3336 30 1 3.5940 -6.5190 -0.0691 31 1 4.8503 -6.1218 -1.2686 32 1 5.4085 -6.7687 1.6610 33 1 5.5072 -7.9587 0.3501 34 1 7.7317 -7.0626 0.9127 35 1 7.2651 -6.6244 -0.7457 36 1 6.1035 -1.8866 -0.6934 37 1 5.9763 -2.2570 1.0514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650611677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:44 Heat of formation + Delta-G solvation = -228.993397 kcal Electronic energy + Delta-G solvation = -30886.998172 eV Core-core repulsion = 26149.784200 eV Total energy + Delta-G solvation = -4737.213972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.074 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.72424 -48.23046 -47.84568 -39.84069 -37.56140 -37.12286 -36.42005 -35.13035 -32.99125 -31.68678 -30.36564 -27.17289 -26.88612 -25.34062 -23.45217 -22.19343 -21.26421 -19.80832 -19.57286 -18.88718 -18.76446 -17.81969 -17.61555 -16.78140 -16.30324 -15.92080 -15.72636 -15.42460 -15.17582 -14.96342 -14.74982 -14.42231 -14.32818 -14.04822 -13.95217 -13.77922 -13.75343 -13.25167 -13.10759 -12.75946 -12.65267 -12.47548 -12.40751 -12.32676 -12.17429 -11.88839 -11.73896 -11.66246 -11.32238 -10.89764 -10.77507 -10.54293 -10.44512 -10.26360 -9.25089 -9.03926 -8.06579 -7.86078 -7.08836 -5.02736 -0.52176 2.01990 2.17424 2.94276 3.13687 3.34534 3.51832 3.59322 3.68366 3.79574 3.83891 4.05710 4.10382 4.17825 4.23649 4.27628 4.34728 4.52137 4.54870 4.68950 5.01038 5.13244 5.22698 5.26515 5.31281 5.47614 5.56317 5.62347 5.66557 5.76694 5.97806 6.16817 6.61885 7.46423 7.65849 8.01396 8.73069 8.81557 9.86981 10.24961 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.004685 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.845093 B = 5975.435252 C = 6098.254844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.062 3.938 3 Si 1.125 2.875 4 H -0.320 1.320 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.587 4.587 8 H 0.074 0.926 9 C 0.569 3.431 10 O -0.610 6.610 11 N -0.633 5.633 12 C 0.121 3.879 13 C -0.081 4.081 14 H 0.118 0.882 15 C -0.159 4.159 16 C -0.101 4.101 17 C -0.608 4.608 18 S 2.436 3.564 19 O -0.907 6.907 20 O -0.915 6.915 21 C -0.645 4.645 22 C 0.491 3.509 23 F -0.150 7.150 24 F -0.159 7.159 25 F -0.171 7.171 26 C 0.157 3.843 27 H 0.278 0.722 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.085 0.915 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.853 -18.412 -1.978 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.156 4.156 3 Si 0.957 3.043 4 H -0.251 1.251 5 H -0.206 1.206 6 H -0.217 1.217 7 C -0.623 4.623 8 H 0.093 0.907 9 C 0.381 3.619 10 O -0.502 6.502 11 N -0.371 5.371 12 C -0.003 4.003 13 C -0.101 4.101 14 H 0.136 0.864 15 C -0.196 4.196 16 C -0.139 4.139 17 C -0.738 4.738 18 S 2.613 3.387 19 O -0.904 6.904 20 O -0.912 6.912 21 C -0.731 4.731 22 C 0.436 3.564 23 F -0.131 7.131 24 F -0.140 7.140 25 F -0.152 7.152 26 C 0.032 3.968 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.158 0.842 35 H 0.171 0.829 36 H 0.103 0.897 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.481 -15.793 -1.312 19.570 hybrid contribution -0.353 -2.468 -0.836 2.629 sum 11.129 -18.261 -2.148 21.492 Atomic orbital electron populations 1.70663 1.07511 1.32034 1.35276 1.27156 0.95314 1.04881 0.88236 0.82464 0.71611 0.70909 0.79307 1.25099 1.20586 1.21722 1.22016 0.89014 0.96482 1.54823 0.90739 1.18313 0.88396 0.79491 0.75745 1.90194 1.70498 1.30170 1.59349 1.48877 1.02495 1.07532 1.78162 1.21994 0.95490 0.81280 1.01491 1.22159 0.89987 0.94630 1.03338 0.86368 1.22013 1.01833 0.92558 1.03233 1.21208 0.88846 1.02202 1.01635 1.30545 1.06736 1.22215 1.14319 1.08028 0.75013 0.79374 0.76280 1.93641 1.84929 1.84799 1.27073 1.93639 1.37980 1.79628 1.79919 1.32644 1.24072 1.13092 1.03279 1.19125 0.75290 0.73577 0.88417 1.93223 1.47978 1.90682 1.81220 1.93297 1.54687 1.75846 1.90165 1.92945 1.93514 1.33072 1.95668 1.21015 0.87294 0.85432 1.03022 0.91107 0.89387 0.90058 0.88147 0.88014 0.89752 0.88910 0.84195 0.82924 0.89660 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.32 13.64 55.55 0.76 -22.56 16 2 C 0.06 1.76 5.52 -17.37 -0.10 1.66 16 3 Si 1.12 29.61 25.99 -169.99 -4.42 25.19 16 4 H -0.32 -8.08 7.11 56.52 0.40 -7.68 16 5 H -0.28 -7.59 6.78 56.52 0.38 -7.20 16 6 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 7 C -0.59 -16.06 9.44 -35.63 -0.34 -16.39 16 8 H 0.07 1.96 6.83 -52.49 -0.36 1.60 16 9 C 0.57 14.96 7.62 -12.99 -0.10 14.86 16 10 O -0.61 -17.55 12.41 5.20 0.06 -17.49 16 11 N -0.63 -13.24 3.34 -172.41 -0.58 -13.81 16 12 C 0.12 1.94 5.59 -2.92 -0.02 1.93 16 13 C -0.08 -0.97 2.03 -90.44 -0.18 -1.16 16 14 H 0.12 1.37 7.32 -51.93 -0.38 0.99 16 15 C -0.16 -1.28 5.31 -27.58 -0.15 -1.43 16 16 C -0.10 -0.65 5.64 -26.68 -0.15 -0.81 16 17 C -0.61 -4.40 5.77 36.97 0.21 -4.19 16 18 S 2.44 29.24 4.47 -107.50 -0.48 28.75 16 19 O -0.91 -13.06 17.43 -57.78 -1.01 -14.07 16 20 O -0.91 -13.27 17.27 -57.78 -1.00 -14.26 16 21 C -0.65 -8.70 0.52 -89.42 -0.05 -8.75 16 22 C 0.49 6.34 1.92 37.16 0.07 6.41 16 23 F -0.15 -2.18 13.66 2.25 0.03 -2.15 16 24 F -0.16 -2.27 15.91 2.25 0.04 -2.23 16 25 F -0.17 -1.65 10.42 2.25 0.02 -1.63 16 26 C 0.16 2.79 5.93 -3.25 -0.02 2.77 16 27 H 0.28 7.47 8.72 -40.82 -0.36 7.11 16 28 H 0.09 1.43 7.14 -51.93 -0.37 1.06 16 29 H 0.08 1.27 5.69 -51.93 -0.30 0.97 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.81 4.53 -51.93 -0.24 0.58 16 32 H 0.08 0.52 7.96 -51.93 -0.41 0.11 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.14 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.15 0.96 5.51 -51.92 -0.29 0.68 16 36 H 0.09 1.55 7.45 -51.93 -0.39 1.17 16 37 H 0.08 1.47 7.91 -51.93 -0.41 1.06 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -34.75 304.32 -6.37 -41.11 By element: Atomic # 1 Polarization: -2.78 SS G_CDS: -3.58 Total: -6.35 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -0.81 Total: -5.09 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.18 Total: -36.37 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.94 Total: -45.82 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.09 Total: -6.01 kcal Atomic # 14 Polarization: 29.61 SS G_CDS: -4.42 Total: 25.19 kcal Atomic # 16 Polarization: 29.24 SS G_CDS: -0.48 Total: 28.75 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.75 -6.37 -41.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650611677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.881 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds