Wall clock time and date at job start Sat Apr 11 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99928 * 2 1 4 4 H 1.48500 * 109.46763 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47042 * 119.99351 * 3 2 1 6 6 H 1.48494 * 109.46878 * 239.99676 * 3 2 1 7 7 C 1.40049 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99824 * 4.66343 * 7 2 1 9 9 C 1.46369 * 120.00495 * 184.66042 * 7 2 1 10 10 O 1.21690 * 119.99722 * 6.24283 * 9 7 2 11 11 N 1.34775 * 120.00526 * 186.24101 * 9 7 2 12 12 C 1.48731 * 125.75019 * 0.02562 * 11 9 7 13 13 C 1.52786 * 103.30130 * 204.20584 * 12 11 9 14 14 H 1.09003 * 109.81626 * 74.28636 * 13 12 11 15 15 C 1.50844 * 117.89558 * 201.03213 * 13 12 11 16 16 C 1.53458 * 108.43633 * 186.93481 * 15 13 12 17 17 C 1.52640 * 112.14760 * 292.75357 * 16 15 13 18 18 S 1.82215 * 110.53146 * 59.33674 * 17 16 15 19 19 O 1.42105 * 108.90443 * 61.13799 * 18 17 16 20 20 O 1.42092 * 108.90687 * 193.07895 * 18 17 16 21 21 C 1.55576 * 100.58094 * 318.55915 * 13 12 11 22 22 C 1.52996 * 111.14696 * 284.46241 * 21 13 12 23 23 F 1.39903 * 109.46808 * 53.08035 * 22 21 13 24 24 F 1.39898 * 109.47492 * 173.07929 * 22 21 13 25 25 F 1.39902 * 109.47172 * 293.08127 * 22 21 13 26 26 C 1.48245 * 125.75645 * 179.72257 * 11 9 7 27 27 H 0.97008 * 119.99822 * 174.89258 * 1 2 3 28 28 H 1.09003 * 110.65346 * 322.66163 * 12 11 9 29 29 H 1.09007 * 110.65341 * 85.75098 * 12 11 9 30 30 H 1.08997 * 109.64548 * 306.61202 * 15 13 12 31 31 H 1.09000 * 109.64739 * 67.03969 * 15 13 12 32 32 H 1.09006 * 108.94350 * 53.43335 * 16 15 13 33 33 H 1.08996 * 108.95117 * 172.06545 * 16 15 13 34 34 H 1.08999 * 109.26297 * 179.61415 * 17 16 15 35 35 H 1.09005 * 109.26391 * 299.10202 * 17 16 15 36 36 H 1.08997 * 110.18018 * 302.64691 * 26 11 9 37 37 H 1.08996 * 110.18706 * 64.48309 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2756 2.7465 -0.0006 5 1 3.0943 1.6965 1.2126 6 1 3.0944 1.6964 -1.2124 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0751 9 6 3.4671 -1.2149 0.1035 10 8 4.0644 -0.1735 0.3027 11 7 4.1499 -2.3700 -0.0221 12 6 3.5530 -3.7101 -0.2667 13 6 4.6077 -4.6701 0.2815 14 1 4.5898 -4.6554 1.3713 15 6 4.5884 -6.0958 -0.2108 16 6 5.6124 -6.9027 0.5986 17 6 7.0464 -6.4662 0.3104 18 16 7.2709 -4.7032 0.7125 19 8 7.0156 -4.5106 2.0971 20 8 8.5010 -4.2576 0.1581 21 6 5.9085 -3.9901 -0.2341 22 6 6.1032 -4.2353 -1.7316 23 9 4.9474 -3.8528 -2.4209 24 9 7.1900 -3.4830 -2.1900 25 9 6.3501 -5.5944 -1.9534 26 6 5.6230 -2.5181 0.0539 27 1 -0.4850 -0.8368 -0.0748 28 1 2.6147 -3.8182 0.2774 29 1 3.4011 -3.8744 -1.3336 30 1 3.5940 -6.5190 -0.0691 31 1 4.8503 -6.1218 -1.2686 32 1 5.4085 -6.7687 1.6610 33 1 5.5072 -7.9587 0.3501 34 1 7.7317 -7.0626 0.9127 35 1 7.2651 -6.6244 -0.7457 36 1 6.1035 -1.8866 -0.6934 37 1 5.9763 -2.2570 1.0514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650611677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:43 Heat of formation + Delta-G solvation = -256.416786 kcal Electronic energy + Delta-G solvation = -30888.187340 eV Core-core repulsion = 26149.784200 eV Total energy + Delta-G solvation = -4738.403140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.074 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.73690 -49.21591 -48.95660 -41.15609 -39.11237 -38.34010 -37.41858 -36.17506 -35.15553 -33.07257 -31.38410 -28.82492 -28.00013 -26.80129 -24.69878 -23.13088 -22.16744 -21.45389 -20.75933 -19.99957 -19.80858 -19.58063 -18.73588 -17.84027 -17.60664 -17.02434 -16.88872 -16.64075 -16.40435 -16.19099 -16.03599 -15.68578 -15.42652 -15.36712 -15.25057 -15.00057 -14.80629 -14.66683 -14.49339 -14.31103 -13.85893 -13.84035 -13.51868 -13.47049 -13.39484 -13.08605 -12.82882 -12.69619 -12.54217 -12.41178 -12.21860 -11.77456 -11.54475 -11.34977 -11.31957 -11.23085 -10.19323 -9.60324 -9.26332 -7.18268 -1.41252 1.01424 1.23744 1.37317 1.49733 1.87636 1.89979 2.10499 2.12019 2.19381 2.42697 2.52189 2.68173 2.91660 3.03141 3.17464 3.21808 3.49100 3.61873 3.82669 3.94057 4.04457 4.14480 4.20872 4.39595 4.51182 4.59506 4.67474 4.89112 4.99134 5.04621 5.11742 5.27130 5.47892 5.54988 5.93186 6.57452 6.89728 7.80939 8.07928 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.004685 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.845093 B = 5975.435252 C = 6098.254844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.034 3.966 3 Si 1.153 2.847 4 H -0.303 1.303 5 H -0.297 1.297 6 H -0.299 1.299 7 C -0.600 4.600 8 H 0.079 0.921 9 C 0.561 3.439 10 O -0.643 6.643 11 N -0.639 5.639 12 C 0.112 3.888 13 C -0.069 4.069 14 H 0.121 0.879 15 C -0.157 4.157 16 C -0.105 4.105 17 C -0.570 4.570 18 S 2.419 3.581 19 O -0.939 6.939 20 O -0.948 6.948 21 C -0.647 4.647 22 C 0.495 3.505 23 F -0.162 7.162 24 F -0.170 7.170 25 F -0.145 7.145 26 C 0.149 3.851 27 H 0.281 0.719 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.135 0.865 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.071 0.929 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 -22.350 -2.235 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.182 4.182 3 Si 0.985 3.015 4 H -0.233 1.233 5 H -0.226 1.226 6 H -0.227 1.227 7 C -0.636 4.636 8 H 0.097 0.903 9 C 0.371 3.629 10 O -0.538 6.538 11 N -0.374 5.374 12 C -0.010 4.010 13 C -0.089 4.089 14 H 0.139 0.861 15 C -0.194 4.194 16 C -0.143 4.143 17 C -0.704 4.704 18 S 2.599 3.401 19 O -0.936 6.936 20 O -0.945 6.945 21 C -0.730 4.730 22 C 0.440 3.560 23 F -0.143 7.143 24 F -0.151 7.151 25 F -0.126 7.126 26 C 0.025 3.975 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.142 0.858 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.153 0.847 34 H 0.197 0.803 35 H 0.188 0.812 36 H 0.090 0.910 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.054 -19.719 -1.583 23.166 hybrid contribution -0.476 -1.391 -0.761 1.656 sum 11.578 -21.110 -2.343 24.191 Atomic orbital electron populations 1.70656 1.07545 1.32342 1.36341 1.27630 0.95730 1.06348 0.88457 0.82063 0.70910 0.70548 0.77948 1.23268 1.22579 1.22656 1.22157 0.89964 0.96501 1.55019 0.90336 1.18257 0.88540 0.80571 0.75563 1.90155 1.71182 1.31995 1.60499 1.48697 1.04305 1.08094 1.76287 1.22248 0.96633 0.79891 1.02231 1.22218 0.86970 0.96238 1.03447 0.86060 1.22127 1.04132 0.89566 1.03565 1.21396 0.87003 1.03906 1.01965 1.30388 1.08806 1.15141 1.16115 1.08608 0.73917 0.82186 0.75390 1.93597 1.84888 1.86397 1.28717 1.93593 1.39134 1.81810 1.79989 1.32682 1.26132 1.09997 1.04223 1.18999 0.74625 0.74518 0.87832 1.93197 1.48682 1.90990 1.81459 1.93278 1.55170 1.76424 1.90244 1.92987 1.93339 1.30789 1.95514 1.21012 0.85131 0.88983 1.02393 0.90824 0.89798 0.89383 0.85765 0.87629 0.88897 0.84679 0.80279 0.81156 0.91036 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.62 13.64 21.84 0.30 -47.32 16 2 C 0.03 1.95 5.52 85.31 0.47 2.42 16 3 Si 1.15 61.49 25.99 68.60 1.78 63.27 16 4 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 5 H -0.30 -16.65 6.78 99.48 0.67 -15.97 16 6 H -0.30 -16.16 7.11 99.48 0.71 -15.45 16 7 C -0.60 -33.43 9.44 24.83 0.23 -33.20 16 8 H 0.08 4.20 6.83 -2.91 -0.02 4.18 16 9 C 0.56 30.37 7.62 86.36 0.66 31.03 16 10 O -0.64 -38.38 12.41 -4.32 -0.05 -38.43 16 11 N -0.64 -27.29 3.34 -817.62 -2.73 -30.01 16 12 C 0.11 3.52 5.59 85.88 0.48 4.00 16 13 C -0.07 -1.50 2.03 -10.68 -0.02 -1.52 16 14 H 0.12 2.59 7.32 -2.39 -0.02 2.57 16 15 C -0.16 -1.79 5.31 30.05 0.16 -1.63 16 16 C -0.10 -0.70 5.64 30.63 0.17 -0.53 16 17 C -0.57 -5.12 5.77 71.86 0.41 -4.70 16 18 S 2.42 53.71 4.47 -56.49 -0.25 53.46 16 19 O -0.94 -26.09 17.43 -127.42 -2.22 -28.31 16 20 O -0.95 -26.79 17.27 -127.42 -2.20 -28.99 16 21 C -0.65 -16.77 0.52 -10.01 -0.01 -16.78 16 22 C 0.50 12.04 1.92 71.98 0.14 12.17 16 23 F -0.16 -4.56 13.66 44.97 0.61 -3.95 16 24 F -0.17 -4.80 15.91 44.97 0.72 -4.08 16 25 F -0.15 -2.26 10.42 44.97 0.47 -1.79 16 26 C 0.15 5.46 5.93 85.94 0.51 5.96 16 27 H 0.28 15.18 8.72 -92.70 -0.81 14.37 16 28 H 0.08 2.69 7.14 -2.39 -0.02 2.67 16 29 H 0.09 2.66 5.69 -2.38 -0.01 2.65 16 30 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 1.17 4.53 -2.39 -0.01 1.16 16 32 H 0.09 0.61 7.96 -2.38 -0.02 0.59 16 33 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.18 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.17 1.09 5.51 -2.38 -0.01 1.08 16 36 H 0.07 2.77 7.45 -2.39 -0.02 2.75 16 37 H 0.08 2.87 7.91 -2.39 -0.02 2.85 16 Total: -1.00 -79.07 304.32 0.71 -78.37 By element: Atomic # 1 Polarization: -10.51 SS G_CDS: 1.07 Total: -9.44 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 3.21 Total: -2.77 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -2.43 Total: -77.33 kcal Atomic # 8 Polarization: -91.26 SS G_CDS: -4.48 Total: -95.74 kcal Atomic # 9 Polarization: -11.62 SS G_CDS: 1.80 Total: -9.82 kcal Atomic # 14 Polarization: 61.49 SS G_CDS: 1.78 Total: 63.27 kcal Atomic # 16 Polarization: 53.71 SS G_CDS: -0.25 Total: 53.46 kcal Total: -79.07 0.71 -78.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650611677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.050 kcal (2) G-P(sol) polarization free energy of solvation -79.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds