Wall clock time and date at job start Sat Apr 11 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86803 * 119.99992 * 2 1 4 4 H 1.48503 * 109.46703 * 239.99646 * 3 2 1 5 5 H 1.48500 * 109.47070 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46877 * 119.99823 * 3 2 1 7 7 C 1.40045 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00037 * 180.02562 * 7 2 1 9 9 C 1.46384 * 119.99895 * 0.02562 * 7 2 1 10 10 O 1.21684 * 119.99555 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99710 * 179.97438 * 9 7 2 12 12 C 1.48690 * 128.21368 * 359.84768 * 11 9 7 13 13 C 1.55071 * 103.75299 * 220.78261 * 12 11 9 14 14 H 1.09005 * 106.51314 * 220.61145 * 13 12 11 15 15 C 1.50099 * 109.91984 * 104.45157 * 13 12 11 16 16 C 1.52513 * 111.96663 * 197.38327 * 15 13 12 17 17 C 1.52739 * 107.19111 * 75.68299 * 16 15 13 18 18 S 1.80014 * 110.25881 * 292.14338 * 17 16 15 19 19 O 1.42104 * 107.80544 * 274.47763 * 18 17 16 20 20 O 1.42099 * 107.80132 * 145.56601 * 18 17 16 21 21 C 1.50092 * 105.40197 * 334.50433 * 13 12 11 22 22 C 1.52996 * 106.11571 * 248.57397 * 21 13 12 23 23 F 1.39899 * 109.47245 * 173.83983 * 22 21 13 24 24 F 1.39908 * 109.47087 * 293.84136 * 22 21 13 25 25 F 1.39899 * 109.46941 * 53.83629 * 22 21 13 26 26 C 1.48546 * 128.14037 * 180.02562 * 11 9 7 27 27 H 0.97001 * 119.99440 * 0.02562 * 1 2 3 28 28 H 1.08996 * 110.45629 * 102.24636 * 12 11 9 29 29 H 1.09002 * 110.75680 * 339.45862 * 12 11 9 30 30 H 1.08997 * 108.98809 * 76.74301 * 15 13 12 31 31 H 1.09007 * 108.91627 * 317.97733 * 15 13 12 32 32 H 1.08998 * 109.91133 * 316.26126 * 16 15 13 33 33 H 1.08998 * 109.91342 * 195.10105 * 16 15 13 34 34 H 1.09003 * 109.34121 * 171.90586 * 17 16 15 35 35 H 1.08995 * 109.34280 * 52.38332 * 17 16 15 36 36 H 1.09002 * 110.56076 * 21.32676 * 26 11 9 37 37 H 1.09005 * 110.55770 * 258.63456 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 3.4206 -3.8601 -0.0026 13 6 3.6203 -5.0428 -0.9853 14 1 4.3813 -5.6868 -0.5445 15 6 4.1590 -4.5369 -2.2917 16 6 3.9787 -5.5527 -3.4150 17 6 2.5062 -5.5216 -3.8197 18 16 1.4808 -6.1723 -2.4910 19 8 1.4357 -7.5859 -2.6294 20 8 0.2553 -5.4529 -2.4959 21 6 2.3249 -5.8007 -0.9654 22 6 2.6263 -7.1391 -0.2882 23 9 1.4342 -7.8482 -0.1055 24 9 3.4936 -7.8847 -1.0940 25 9 3.2267 -6.9083 0.9541 26 6 1.3959 -5.0263 0.0000 27 1 -0.4849 0.8401 -0.0004 28 1 3.7690 -4.1275 0.9950 29 1 3.9384 -2.9710 -0.3626 30 1 5.2210 -4.3198 -2.1772 31 1 3.6363 -3.6180 -2.5574 32 1 4.2455 -6.5485 -3.0612 33 1 4.6033 -5.2802 -4.2657 34 1 2.3649 -6.1277 -4.7146 35 1 2.2119 -4.4939 -4.0324 36 1 0.3712 -5.0276 -0.3715 37 1 1.4397 -5.4567 1.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650611680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:48 Heat of formation + Delta-G solvation = -231.136803 kcal Electronic energy + Delta-G solvation = -30818.872610 eV Core-core repulsion = 26081.565693 eV Total energy + Delta-G solvation = -4737.306918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.074 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.35737 -47.74662 -47.73995 -39.63265 -37.09780 -36.67614 -36.14391 -34.95136 -32.63432 -31.72248 -30.23412 -26.96401 -26.61990 -24.95300 -23.39124 -22.39240 -21.06937 -19.73886 -18.64996 -18.57470 -18.31515 -18.15505 -17.10547 -16.63423 -15.89889 -15.60097 -15.27366 -15.00047 -14.78738 -14.56372 -14.43833 -14.38178 -14.12939 -14.01952 -13.87542 -13.79130 -13.48907 -13.24948 -12.79421 -12.65187 -12.36478 -12.16666 -12.10187 -11.97615 -11.75265 -11.48845 -11.41635 -11.37861 -11.24327 -11.01565 -10.89534 -10.62870 -10.44604 -10.30705 -10.28225 -8.97283 -7.81621 -7.62019 -6.32770 -4.79911 -0.21949 2.18042 2.54569 3.06813 3.12164 3.14480 3.27704 3.33952 3.75625 3.88010 3.94629 4.12778 4.22416 4.24469 4.35904 4.40298 4.48115 4.54130 4.72998 4.98502 5.15212 5.23303 5.38859 5.47091 5.52004 5.65607 5.75107 5.79199 5.95127 6.02119 6.13050 6.19051 6.81986 7.30827 7.87917 8.19427 8.87634 9.27678 10.41785 10.60848 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.004758 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.190863 B = 5883.775113 C = 5973.939697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.086 3.914 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.575 3.425 10 O -0.559 6.559 11 N -0.637 5.637 12 C 0.119 3.881 13 C -0.072 4.072 14 H 0.089 0.911 15 C -0.131 4.131 16 C -0.105 4.105 17 C -0.616 4.616 18 S 2.459 3.541 19 O -0.928 6.928 20 O -0.903 6.903 21 C -0.631 4.631 22 C 0.480 3.520 23 F -0.166 7.166 24 F -0.168 7.168 25 F -0.164 7.164 26 C 0.134 3.866 27 H 0.272 0.728 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.805 -10.693 -5.409 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.382 3.618 10 O -0.440 6.440 11 N -0.377 5.377 12 C -0.006 4.006 13 C -0.093 4.093 14 H 0.107 0.893 15 C -0.169 4.169 16 C -0.143 4.143 17 C -0.747 4.747 18 S 2.636 3.364 19 O -0.925 6.925 20 O -0.900 6.900 21 C -0.718 4.718 22 C 0.424 3.576 23 F -0.147 7.147 24 F -0.149 7.149 25 F -0.145 7.145 26 C 0.007 3.993 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.131 0.869 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.100 -10.865 -5.382 15.780 hybrid contribution 1.289 0.782 0.279 1.533 sum 11.389 -10.083 -5.103 16.044 Atomic orbital electron populations 1.70001 1.07081 1.27800 1.34204 1.25733 0.94684 1.00362 0.92662 0.86381 0.79793 0.80842 0.79466 1.19214 1.20427 1.19201 1.20755 0.93513 0.88443 1.54673 0.91055 1.18167 0.86756 0.80477 0.76388 1.90673 1.13643 1.84954 1.54688 1.49681 1.04547 1.03004 1.80420 1.22526 0.85081 0.96129 0.96911 1.20537 0.90531 0.98719 0.99468 0.89319 1.21286 1.03627 0.99908 0.92051 1.21237 0.91952 1.01048 1.00021 1.30320 1.11202 1.15049 1.18088 1.06977 0.76819 0.75880 0.76742 1.93619 1.85980 1.27940 1.85003 1.93670 1.37573 1.74261 1.84534 1.32169 1.13688 1.00922 1.25054 1.19507 0.75243 0.84927 0.77928 1.93262 1.45848 1.80345 1.95256 1.93218 1.70244 1.78604 1.72814 1.93200 1.83724 1.94369 1.43213 1.22110 0.96802 0.85156 0.95210 0.91707 0.91810 0.88811 0.88606 0.89259 0.89960 0.88628 0.83984 0.83546 0.86944 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.10 11.83 55.55 0.66 -21.45 16 2 C 0.09 2.29 5.50 -17.37 -0.10 2.19 16 3 Si 0.91 19.03 29.56 -169.99 -5.02 14.01 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.54 -14.17 9.09 -35.63 -0.32 -14.49 16 8 H 0.07 1.67 6.53 -52.49 -0.34 1.32 16 9 C 0.57 15.67 7.86 -12.99 -0.10 15.57 16 10 O -0.56 -17.87 15.32 5.20 0.08 -17.79 16 11 N -0.64 -13.54 3.34 -169.53 -0.57 -14.10 16 12 C 0.12 1.85 6.44 -1.74 -0.01 1.84 16 13 C -0.07 -0.90 1.90 -92.41 -0.18 -1.08 16 14 H 0.09 0.91 6.42 -51.93 -0.33 0.58 16 15 C -0.13 -1.30 4.89 -28.42 -0.14 -1.43 16 16 C -0.10 -0.90 5.87 -27.11 -0.16 -1.06 16 17 C -0.62 -6.53 6.11 37.02 0.23 -6.31 16 18 S 2.46 37.56 4.85 -107.50 -0.52 37.04 16 19 O -0.93 -15.16 14.94 -57.95 -0.87 -16.02 16 20 O -0.90 -17.89 16.12 -57.95 -0.93 -18.83 16 21 C -0.63 -9.48 0.76 -91.14 -0.07 -9.55 16 22 C 0.48 6.86 1.47 37.16 0.05 6.92 16 23 F -0.17 -2.62 15.43 2.25 0.03 -2.58 16 24 F -0.17 -2.19 14.86 2.25 0.03 -2.16 16 25 F -0.16 -2.24 15.27 2.25 0.03 -2.21 16 26 C 0.13 2.52 5.64 -1.99 -0.01 2.51 16 27 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.40 6.34 -51.93 -0.33 1.07 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 32 H 0.08 0.65 7.36 -51.93 -0.38 0.27 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.14 1.16 8.14 -51.84 -0.42 0.74 16 35 H 0.15 1.53 7.86 -51.84 -0.41 1.12 16 36 H 0.11 2.40 6.17 -51.93 -0.32 2.08 16 37 H 0.08 1.39 6.98 -51.93 -0.36 1.02 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -36.17 314.47 -6.83 -43.00 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -3.70 Total: 1.23 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.81 Total: -4.88 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.09 Total: -35.55 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -1.72 Total: -52.64 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.10 Total: -6.95 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Atomic # 16 Polarization: 37.56 SS G_CDS: -0.52 Total: 37.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.17 -6.83 -43.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650611680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.134 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds