Wall clock time and date at job start Sat Apr 11 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48493 * 109.47512 * 269.99811 * 3 2 1 5 5 H 1.48499 * 109.46991 * 30.00500 * 3 2 1 6 6 H 1.48505 * 109.46835 * 150.00044 * 3 2 1 7 7 C 1.38797 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00391 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99643 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46795 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00270 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99696 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.65218 * 359.97438 * 13 11 10 15 15 C 1.54908 * 104.83357 * 155.88832 * 14 13 11 16 16 C 1.55156 * 101.58197 * 37.01425 * 15 14 13 17 17 H 1.08997 * 110.72273 * 82.85614 * 16 15 14 18 18 N 1.46502 * 110.72097 * 206.13643 * 16 15 14 19 19 C 1.34776 * 119.99905 * 199.97606 * 18 16 15 20 20 O 1.21576 * 119.99964 * 359.97438 * 19 18 16 21 21 C 1.47693 * 120.00060 * 179.97438 * 19 18 16 22 22 C 1.39480 * 122.10252 * 179.97438 * 21 19 18 23 23 C 1.35008 * 111.68295 * 180.02562 * 22 21 19 24 24 S 1.71764 * 105.45035 * 359.97438 * 23 22 21 25 25 N 1.30604 * 122.10312 * 359.71084 * 21 19 18 26 26 C 1.47031 * 125.64646 * 179.97438 * 13 11 10 27 27 H 0.96995 * 119.99873 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47529 * 60.00360 * 10 9 7 29 29 H 1.09001 * 109.47534 * 299.99793 * 10 9 7 30 30 H 1.09000 * 110.36378 * 37.05323 * 14 13 11 31 31 H 1.09001 * 110.46274 * 274.77499 * 14 13 11 32 32 H 1.08999 * 111.00895 * 278.93886 * 15 14 13 33 33 H 1.09000 * 111.04072 * 155.09810 * 15 14 13 34 34 H 0.97003 * 120.00356 * 19.96921 * 18 16 15 35 35 H 1.08000 * 124.16240 * 0.03299 * 22 21 19 36 36 H 1.08000 * 127.27701 * 180.02562 * 23 22 21 37 37 H 1.08998 * 109.88059 * 61.62395 * 26 13 11 38 38 H 1.08994 * 109.87878 * 300.45675 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 4.3153 -6.2447 -0.0025 15 6 4.8024 -7.5822 0.6087 16 6 3.7732 -8.5851 0.0237 17 1 4.0589 -8.8873 -0.9838 18 7 3.6338 -9.7532 0.8969 19 6 3.1236 -10.9016 0.4098 20 8 2.7786 -10.9681 -0.7541 21 6 2.9835 -12.0794 1.2899 22 6 2.4609 -13.2889 0.8322 23 6 2.4279 -14.2197 1.8095 24 16 3.0688 -13.4444 3.2017 25 7 3.3458 -12.0554 2.5445 26 6 2.4668 -7.7640 -0.0019 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7313 0.8894 29 1 3.1246 -3.7313 -0.8905 30 1 4.6396 -5.4058 0.6133 31 1 4.6893 -6.1343 -1.0203 32 1 4.7483 -7.5571 1.6971 33 1 5.8125 -7.8199 0.2752 34 1 3.9087 -9.7001 1.8257 35 1 2.1242 -13.4598 -0.1797 36 1 2.0742 -15.2372 1.7320 37 1 1.9004 -7.9970 -0.9036 38 1 1.8699 -7.9890 0.8819 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687135721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:04 Heat of formation + Delta-G solvation = -46.102863 kcal Electronic energy + Delta-G solvation = -23536.753766 eV Core-core repulsion = 19824.372885 eV Total energy + Delta-G solvation = -3712.380881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74562 -40.96129 -39.53235 -38.39216 -35.53435 -34.59086 -32.77819 -32.07491 -30.92557 -29.37947 -27.72714 -27.31911 -24.70883 -23.07733 -22.02979 -21.26247 -20.73147 -19.67235 -19.31903 -18.80431 -18.19371 -17.79796 -16.89840 -16.84652 -16.65590 -16.46586 -15.87724 -15.63509 -15.49527 -14.95486 -14.64866 -14.56128 -14.42321 -14.23483 -14.00911 -13.73473 -13.37545 -13.16988 -12.95034 -12.89007 -12.74506 -12.61981 -12.36991 -12.22203 -11.92385 -11.73825 -11.20298 -11.14636 -11.06860 -10.87208 -10.41519 -10.29018 -9.81103 -9.78012 -8.69673 -8.34932 -6.14303 -0.46495 0.51671 0.68848 0.77598 1.19986 1.42630 1.43113 1.50447 1.55315 1.81766 2.06788 2.18711 2.26760 2.99253 3.18826 3.34483 3.45506 3.65405 3.82953 3.85799 3.96373 4.10154 4.21851 4.28150 4.38938 4.42565 4.53299 4.58543 4.67407 4.70755 4.85396 4.90634 5.00212 5.18585 5.23776 5.34593 5.41426 6.19479 6.28513 6.33144 6.94940 7.04504 7.06012 8.74447 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.001828 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.129491 B =15311.203964 C =15447.447123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.157 6.157 10 C -0.117 4.117 11 C 0.544 3.456 12 O -0.570 6.570 13 N -0.615 5.615 14 C 0.090 3.910 15 C -0.120 4.120 16 C 0.144 3.856 17 H 0.110 0.890 18 N -0.693 5.693 19 C 0.589 3.411 20 O -0.560 6.560 21 C 0.023 3.977 22 C -0.157 4.157 23 C -0.268 4.268 24 S 0.541 5.459 25 N -0.549 5.549 26 C 0.098 3.902 27 H 0.271 0.729 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.420 0.580 35 H 0.169 0.831 36 H 0.221 0.779 37 H 0.051 0.949 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.152 -30.843 7.182 35.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.071 5.929 10 C -0.268 4.268 11 C 0.333 3.667 12 O -0.449 6.449 13 N -0.351 5.351 14 C -0.032 4.032 15 C -0.158 4.158 16 C 0.038 3.962 17 H 0.128 0.872 18 N -0.345 5.345 19 C 0.372 3.628 20 O -0.438 6.438 21 C -0.149 4.149 22 C -0.189 4.189 23 C -0.417 4.417 24 S 0.696 5.304 25 N -0.387 5.387 26 C -0.027 4.027 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.258 0.742 35 H 0.186 0.814 36 H 0.238 0.762 37 H 0.070 0.930 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.645 -30.625 8.329 34.953 hybrid contribution 0.464 1.198 -1.717 2.145 sum 15.109 -29.426 6.611 33.733 Atomic orbital electron populations 1.70196 1.08068 1.28631 1.47998 1.26179 0.95990 1.03451 0.93709 0.84915 0.78228 0.75786 0.78801 1.19324 1.20375 1.17925 1.23193 0.95401 0.91650 1.58897 0.89611 1.85682 1.10704 0.99494 1.97061 1.23290 1.03406 0.93260 1.06805 1.19933 0.85392 0.86138 0.75267 1.90693 1.17414 1.85821 1.50942 1.48365 1.08501 1.04758 1.73450 1.22731 0.77114 0.99991 1.03344 1.23105 0.99659 0.90841 1.02151 1.21952 0.93388 0.84528 0.96338 0.87208 1.45685 1.63260 1.10049 1.15463 1.17640 0.76734 0.82464 0.85988 1.90816 1.50655 1.84214 1.18102 1.20965 1.06704 0.96987 0.90273 1.21498 1.02814 0.90909 1.03691 1.27645 1.07098 1.07308 0.99652 1.80350 1.43549 0.93558 1.12936 1.71973 1.25759 1.27940 1.12997 1.22306 0.98546 0.80552 1.01270 0.92005 0.86935 0.87129 0.88349 0.88855 0.88588 0.85278 0.74196 0.81353 0.76199 0.93034 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16 2 C 0.01 0.65 5.49 84.86 0.47 1.11 16 3 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.54 -31.22 9.50 67.95 0.65 -30.58 16 8 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 9 S -0.16 -8.92 20.57 -56.49 -1.16 -10.08 16 10 C -0.12 -4.78 5.16 71.24 0.37 -4.41 16 11 C 0.54 22.03 7.87 87.66 0.69 22.72 16 12 O -0.57 -29.03 16.19 -3.01 -0.05 -29.08 16 13 N -0.62 -17.95 3.33 -811.79 -2.70 -20.65 16 14 C 0.09 1.56 6.69 86.86 0.58 2.15 16 15 C -0.12 -1.38 6.69 31.99 0.21 -1.16 16 16 C 0.14 2.63 3.23 46.18 0.15 2.78 16 17 H 0.11 2.08 7.70 -2.39 -0.02 2.06 16 18 N -0.69 -12.48 5.13 -439.92 -2.25 -14.73 16 19 C 0.59 13.27 7.81 86.74 0.68 13.95 16 20 O -0.56 -16.28 16.39 -3.96 -0.06 -16.34 16 21 C 0.02 0.43 6.66 42.13 0.28 0.71 16 22 C -0.16 -2.28 9.98 21.83 0.22 -2.06 16 23 C -0.27 -1.96 11.41 67.08 0.77 -1.20 16 24 S 0.54 4.08 23.20 -56.49 -1.31 2.77 16 25 N -0.55 -8.36 10.71 -75.30 -0.81 -9.17 16 26 C 0.10 2.70 6.62 86.73 0.57 3.27 16 27 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.11 4.08 7.85 -2.40 -0.02 4.06 16 29 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 30 H 0.10 1.54 7.48 -2.39 -0.02 1.52 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 0.97 8.00 -2.39 -0.02 0.95 16 33 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.42 6.08 7.98 -92.71 -0.74 5.34 16 35 H 0.17 2.48 7.99 -2.91 -0.02 2.46 16 36 H 0.22 0.01 8.06 -2.91 -0.02 -0.01 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.68 8.03 -2.39 -0.02 1.66 16 Total: -1.00 -86.96 358.49 -0.04 -87.00 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.37 Total: 13.77 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 5.63 Total: 7.27 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -5.48 Total: -101.00 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.11 Total: -45.42 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -4.84 SS G_CDS: -2.47 Total: -7.32 kcal Total: -86.96 -0.04 -87.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687135721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.898 kcal (2) G-P(sol) polarization free energy of solvation -86.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds