Wall clock time and date at job start Sat Apr 11 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48502 * 109.46935 * 239.99862 * 3 2 1 5 5 H 1.48499 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47522 * 119.99956 * 3 2 1 7 7 C 1.38797 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00467 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00344 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47433 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99541 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99596 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99505 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.85121 * 23.79637 * 14 13 11 16 16 C 1.53783 * 113.61606 * 155.00028 * 14 13 11 17 17 C 1.53787 * 87.08140 * 89.19658 * 16 14 13 18 18 H 1.08999 * 113.61464 * 270.80363 * 17 16 14 19 19 N 1.46493 * 113.61358 * 139.98412 * 17 16 14 20 20 C 1.34776 * 120.00058 * 156.52943 * 19 17 16 21 21 O 1.21614 * 120.00060 * 0.02562 * 20 19 17 22 22 C 1.47265 * 119.99856 * 179.97438 * 20 19 17 23 23 N 1.30557 * 125.54088 * 359.97438 * 22 20 19 24 24 C 1.30706 * 115.90313 * 179.73462 * 23 22 20 25 25 C 1.34235 * 115.78302 * 0.51961 * 24 23 22 26 26 S 1.71076 * 109.09071 * 359.50923 * 25 24 23 27 27 C 1.53781 * 87.17216 * 25.39154 * 17 16 14 28 28 H 0.97002 * 120.00573 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47526 * 59.99559 * 10 9 7 30 30 H 1.09003 * 109.46945 * 300.00050 * 10 9 7 31 31 H 0.96994 * 120.00280 * 359.97438 * 13 11 10 32 32 H 1.09003 * 113.61001 * 334.64976 * 16 14 13 33 33 H 1.09001 * 113.61595 * 203.74472 * 16 14 13 34 34 H 0.97003 * 120.00202 * 336.52169 * 19 17 16 35 35 H 1.07994 * 122.10824 * 180.29824 * 24 23 22 36 36 H 1.08002 * 125.45719 * 179.77895 * 25 24 23 37 37 H 1.08999 * 113.61317 * 89.15991 * 27 17 16 38 38 H 1.08997 * 113.61234 * 220.05923 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3028 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0007 14 6 2.3305 -7.7151 -0.0019 15 1 1.3214 -7.7889 -0.4075 16 6 3.3105 -8.7394 -0.5980 17 6 3.8823 -8.9002 0.8205 18 1 4.6903 -8.2045 1.0470 19 7 4.2100 -10.2852 1.1676 20 6 5.1204 -10.5420 2.1277 21 8 5.6695 -9.6239 2.7062 22 6 5.4494 -11.9342 2.4769 23 7 4.9270 -12.9979 1.9289 24 6 5.3613 -14.1449 2.3807 25 6 6.2801 -14.0777 3.3571 26 16 6.6111 -12.4351 3.7019 27 6 2.5105 -8.4421 1.3432 28 1 -0.4851 0.8400 0.0004 29 1 3.1246 -3.7314 0.8905 30 1 3.1245 -3.7314 -0.8895 31 1 3.8009 -6.1835 -0.0012 32 1 4.0165 -8.3068 -1.3069 33 1 2.8251 -9.6385 -0.9776 34 1 3.7717 -11.0174 0.7066 35 1 5.0009 -15.0872 1.9954 36 1 6.7402 -14.9250 3.8437 37 1 1.8060 -9.2598 1.4953 38 1 2.5717 -7.7700 2.1991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688012131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:12 Heat of formation + Delta-G solvation = -1.360332 kcal Electronic energy + Delta-G solvation = -23020.921178 eV Core-core repulsion = 19310.480478 eV Total energy + Delta-G solvation = -3710.440700 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87518 -40.12244 -39.18220 -37.88876 -34.36465 -32.59736 -32.41134 -31.00801 -29.05146 -27.06106 -26.03108 -25.49380 -24.49936 -22.39616 -21.02355 -20.38125 -19.84528 -18.87515 -17.85560 -17.45008 -16.94798 -16.15746 -15.97532 -15.83911 -15.69660 -14.95302 -14.79145 -14.58672 -14.43440 -14.22453 -13.95272 -13.71039 -13.16415 -12.95023 -12.81060 -12.68995 -12.26376 -12.06518 -11.90687 -11.10861 -11.03348 -11.02250 -10.91951 -10.82771 -10.75209 -10.35814 -10.26329 -9.81271 -9.58253 -9.43389 -9.37054 -9.05002 -8.90696 -8.23219 -6.48810 -6.20168 -3.90845 -0.31038 0.59399 1.15382 1.81344 2.71263 2.71902 2.99610 3.04559 3.25051 3.28587 3.31696 3.60105 3.68119 4.12379 4.21913 4.29587 4.48593 4.53410 4.66947 4.74455 4.77279 5.12043 5.14978 5.31068 5.36441 5.43594 5.52799 5.59859 5.61892 5.82517 5.89487 5.91810 6.08127 6.15485 6.64253 6.81086 7.07095 7.60759 7.64890 7.67488 8.36493 8.58876 9.25073 10.87181 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.028917 B = 0.001680 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.054804 B =16658.805135 C =17319.213648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.515 6.515 13 N -0.723 5.723 14 C 0.129 3.871 15 H 0.111 0.889 16 C -0.151 4.151 17 C 0.120 3.880 18 H 0.119 0.881 19 N -0.692 5.692 20 C 0.598 3.402 21 O -0.524 6.524 22 C -0.024 4.024 23 N -0.426 5.426 24 C 0.028 3.972 25 C -0.281 4.281 26 S 0.257 5.743 27 C -0.164 4.164 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.399 0.601 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.412 0.588 35 H 0.179 0.821 36 H 0.185 0.815 37 H 0.094 0.906 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.311 -30.850 3.869 34.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.388 6.388 13 N -0.376 5.376 14 C 0.022 3.978 15 H 0.129 0.871 16 C -0.190 4.190 17 C 0.015 3.985 18 H 0.137 0.863 19 N -0.343 5.343 20 C 0.380 3.620 21 O -0.399 6.399 22 C -0.298 4.298 23 N -0.144 5.144 24 C -0.129 4.129 25 C -0.422 4.422 26 S 0.511 5.489 27 C -0.204 4.204 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.234 0.766 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.248 0.752 35 H 0.196 0.804 36 H 0.203 0.797 37 H 0.112 0.888 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.796 -29.746 4.565 32.701 hybrid contribution 1.955 -0.201 -0.482 2.024 sum 14.751 -29.947 4.083 33.631 Atomic orbital electron populations 1.70005 1.05946 1.27564 1.46787 1.24985 0.95025 0.99011 0.94519 0.86225 0.79235 0.81239 0.78806 1.19944 1.20819 1.19938 1.22833 0.94902 0.91666 1.59065 0.90945 1.85386 1.04855 0.96300 1.96732 1.23544 1.06658 0.95235 1.05061 1.20335 0.86510 0.86239 0.74686 1.90700 1.15354 1.85516 1.47271 1.45731 1.09873 1.04532 1.77499 1.21561 0.99172 0.81106 0.95946 0.87105 1.23750 0.99130 1.00081 0.96052 1.22839 0.97599 0.82375 0.95677 0.86330 1.45746 1.41306 1.09382 1.37878 1.16763 0.79876 0.84901 0.80434 1.90893 1.52472 1.44270 1.52292 1.27744 1.02669 0.97473 1.01923 1.66802 1.24132 0.97797 1.25664 1.21737 0.97457 0.96974 0.96764 1.26987 1.06082 1.03734 1.05395 1.84201 1.35751 0.95991 1.32917 1.24003 0.96454 1.00741 0.99212 0.92133 0.89083 0.89118 0.76637 0.89735 0.88128 0.75214 0.80390 0.79732 0.88761 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.54 9.77 7.85 -10.98 -0.09 9.69 16 12 O -0.51 -11.46 15.46 5.56 0.09 -11.37 16 13 N -0.72 -9.22 5.26 -52.92 -0.28 -9.50 16 14 C 0.13 1.39 4.33 -67.02 -0.29 1.10 16 15 H 0.11 1.38 7.46 -51.93 -0.39 0.99 16 16 C -0.15 -1.11 7.58 -25.91 -0.20 -1.30 16 17 C 0.12 1.03 4.09 -67.12 -0.27 0.75 16 18 H 0.12 1.15 7.50 -51.93 -0.39 0.76 16 19 N -0.69 -5.75 5.36 -54.14 -0.29 -6.04 16 20 C 0.60 6.21 7.81 -12.59 -0.10 6.11 16 21 O -0.52 -6.98 16.56 5.27 0.09 -6.90 16 22 C -0.02 -0.21 7.46 -14.43 -0.11 -0.32 16 23 N -0.43 -3.41 10.24 -11.50 -0.12 -3.53 16 24 C 0.03 0.16 11.24 -19.44 -0.22 -0.06 16 25 C -0.28 -1.30 11.09 29.32 0.33 -0.97 16 26 S 0.26 1.69 23.03 -107.50 -2.48 -0.79 16 27 C -0.16 -1.63 7.69 -25.82 -0.20 -1.82 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 31 H 0.40 4.03 8.70 -40.82 -0.36 3.67 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.57 8.11 -51.93 -0.42 0.15 16 34 H 0.41 2.73 8.37 -40.82 -0.34 2.39 16 35 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.19 0.30 8.06 -52.49 -0.42 -0.12 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -36.50 363.95 -9.13 -45.63 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.40 Total: 2.53 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.73 Total: -2.68 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.05 Total: -44.54 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.17 Total: -18.27 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -4.69 Total: -4.61 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.50 -9.13 -45.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688012131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.266 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds