Wall clock time and date at job start Sat Apr 11 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00016 * 2 1 4 4 H 1.48502 * 109.46935 * 239.99862 * 3 2 1 5 5 H 1.48499 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47522 * 119.99956 * 3 2 1 7 7 C 1.38797 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00467 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00344 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47433 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99541 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99596 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99505 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.85121 * 23.79637 * 14 13 11 16 16 C 1.53783 * 113.61606 * 155.00028 * 14 13 11 17 17 C 1.53787 * 87.08140 * 89.19658 * 16 14 13 18 18 H 1.08999 * 113.61464 * 270.80363 * 17 16 14 19 19 N 1.46493 * 113.61358 * 139.98412 * 17 16 14 20 20 C 1.34776 * 120.00058 * 156.52943 * 19 17 16 21 21 O 1.21614 * 120.00060 * 0.02562 * 20 19 17 22 22 C 1.47265 * 119.99856 * 179.97438 * 20 19 17 23 23 N 1.30557 * 125.54088 * 359.97438 * 22 20 19 24 24 C 1.30706 * 115.90313 * 179.73462 * 23 22 20 25 25 C 1.34235 * 115.78302 * 0.51961 * 24 23 22 26 26 S 1.71076 * 109.09071 * 359.50923 * 25 24 23 27 27 C 1.53781 * 87.17216 * 25.39154 * 17 16 14 28 28 H 0.97002 * 120.00573 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47526 * 59.99559 * 10 9 7 30 30 H 1.09003 * 109.46945 * 300.00050 * 10 9 7 31 31 H 0.96994 * 120.00280 * 359.97438 * 13 11 10 32 32 H 1.09003 * 113.61001 * 334.64976 * 16 14 13 33 33 H 1.09001 * 113.61595 * 203.74472 * 16 14 13 34 34 H 0.97003 * 120.00202 * 336.52169 * 19 17 16 35 35 H 1.07994 * 122.10824 * 180.29824 * 24 23 22 36 36 H 1.08002 * 125.45719 * 179.77895 * 25 24 23 37 37 H 1.08999 * 113.61317 * 89.15991 * 27 17 16 38 38 H 1.08997 * 113.61234 * 220.05923 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3028 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0007 14 6 2.3305 -7.7151 -0.0019 15 1 1.3214 -7.7889 -0.4075 16 6 3.3105 -8.7394 -0.5980 17 6 3.8823 -8.9002 0.8205 18 1 4.6903 -8.2045 1.0470 19 7 4.2100 -10.2852 1.1676 20 6 5.1204 -10.5420 2.1277 21 8 5.6695 -9.6239 2.7062 22 6 5.4494 -11.9342 2.4769 23 7 4.9270 -12.9979 1.9289 24 6 5.3613 -14.1449 2.3807 25 6 6.2801 -14.0777 3.3571 26 16 6.6111 -12.4351 3.7019 27 6 2.5105 -8.4421 1.3432 28 1 -0.4851 0.8400 0.0004 29 1 3.1246 -3.7314 0.8905 30 1 3.1245 -3.7314 -0.8895 31 1 3.8009 -6.1835 -0.0012 32 1 4.0165 -8.3068 -1.3069 33 1 2.8251 -9.6385 -0.9776 34 1 3.7717 -11.0174 0.7066 35 1 5.0009 -15.0872 1.9954 36 1 6.7402 -14.9250 3.8437 37 1 1.8060 -9.2598 1.4953 38 1 2.5717 -7.7700 2.1991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688012131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:12 Heat of formation + Delta-G solvation = -29.813115 kcal Electronic energy + Delta-G solvation = -23022.154983 eV Core-core repulsion = 19310.480478 eV Total energy + Delta-G solvation = -3711.674505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66384 -40.90499 -40.09656 -38.97854 -35.32554 -34.57867 -33.69220 -31.56687 -30.52028 -27.73733 -27.58301 -26.77205 -25.30798 -23.02983 -22.24191 -21.06451 -20.74934 -19.83031 -19.44855 -18.11036 -18.04115 -17.30358 -17.04830 -16.87071 -16.55256 -16.42916 -16.17784 -15.96621 -15.27593 -15.09584 -14.84961 -14.63304 -14.38211 -14.34612 -14.00949 -13.51341 -13.35899 -13.18334 -13.14829 -12.86229 -12.60447 -12.49005 -11.95811 -11.75196 -11.70592 -11.58389 -11.12354 -10.98682 -10.94056 -10.74265 -10.28948 -10.27631 -10.07864 -9.90017 -8.65829 -8.33882 -6.11925 -0.83214 0.09452 0.71048 1.26500 1.27012 1.44332 1.46858 1.56807 1.58966 2.05683 2.08431 2.23806 2.29081 3.00105 3.04879 3.32093 3.36491 3.52610 3.84062 3.93880 3.97455 4.03635 4.28589 4.31566 4.38664 4.51810 4.55424 4.70231 4.76689 4.87425 4.95920 5.00240 5.06842 5.31184 5.42333 5.59361 6.20273 6.21201 6.48173 6.50817 6.95958 7.07301 7.23777 8.75034 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.028917 B = 0.001680 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.054804 B =16658.805135 C =17319.213648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.132 4.132 11 C 0.539 3.461 12 O -0.562 6.562 13 N -0.698 5.698 14 C 0.116 3.884 15 H 0.095 0.905 16 C -0.125 4.125 17 C 0.124 3.876 18 H 0.110 0.890 19 N -0.681 5.681 20 C 0.596 3.404 21 O -0.564 6.564 22 C -0.060 4.060 23 N -0.431 5.431 24 C 0.010 3.990 25 C -0.254 4.254 26 S 0.256 5.744 27 C -0.162 4.162 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.416 0.584 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.421 0.579 35 H 0.206 0.794 36 H 0.220 0.780 37 H 0.106 0.894 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.760 -32.882 3.570 37.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.283 4.283 11 C 0.325 3.675 12 O -0.440 6.440 13 N -0.351 5.351 14 C 0.009 3.991 15 H 0.114 0.886 16 C -0.164 4.164 17 C 0.019 3.981 18 H 0.128 0.872 19 N -0.332 5.332 20 C 0.379 3.621 21 O -0.442 6.442 22 C -0.333 4.333 23 N -0.150 5.150 24 C -0.146 4.146 25 C -0.395 4.395 26 S 0.509 5.491 27 C -0.202 4.202 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.253 0.747 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.259 0.741 35 H 0.223 0.777 36 H 0.236 0.764 37 H 0.125 0.875 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.278 -31.834 4.242 35.564 hybrid contribution 1.253 0.186 -0.331 1.310 sum 16.532 -31.648 3.911 35.919 Atomic orbital electron populations 1.70173 1.07941 1.28669 1.47922 1.26115 0.95964 1.03281 0.93721 0.85013 0.77815 0.75753 0.79470 1.18605 1.20347 1.18798 1.23185 0.95372 0.92080 1.58997 0.89933 1.85544 1.10460 0.99148 1.97057 1.23392 1.03637 0.94412 1.06851 1.20033 0.86232 0.86589 0.74684 1.90688 1.17330 1.86005 1.49979 1.45464 1.10091 1.04391 1.75186 1.21753 0.99562 0.80371 0.97381 0.88647 1.23666 0.97864 0.99521 0.95313 1.22720 0.96468 0.82519 0.96431 0.87246 1.45653 1.40718 1.09484 1.37341 1.17022 0.79573 0.85384 0.80124 1.90860 1.54033 1.45588 1.53758 1.27469 1.04870 0.96952 1.04025 1.66790 1.24149 0.98260 1.25762 1.22215 0.97926 0.97197 0.97272 1.27414 1.04563 1.03508 1.04045 1.84233 1.35071 0.97552 1.32217 1.23996 0.97840 1.00602 0.97770 0.91986 0.87403 0.86975 0.74709 0.88299 0.85571 0.74080 0.77747 0.76363 0.87533 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.92 29.55 68.60 2.03 45.94 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.55 -31.57 9.50 67.95 0.65 -30.92 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.50 16 10 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 11 C 0.54 19.69 7.85 87.66 0.69 20.37 16 12 O -0.56 -25.81 15.46 -3.01 -0.05 -25.85 16 13 N -0.70 -17.14 5.26 -439.74 -2.32 -19.46 16 14 C 0.12 2.38 4.33 45.58 0.20 2.57 16 15 H 0.10 2.34 7.46 -2.39 -0.02 2.33 16 16 C -0.13 -1.52 7.58 31.12 0.24 -1.28 16 17 C 0.12 1.97 4.09 45.52 0.19 2.16 16 18 H 0.11 2.02 7.50 -2.39 -0.02 2.00 16 19 N -0.68 -10.55 5.36 -443.47 -2.38 -12.93 16 20 C 0.60 12.21 7.81 86.62 0.68 12.89 16 21 O -0.56 -15.30 16.56 -4.07 -0.07 -15.37 16 22 C -0.06 -1.02 7.46 87.26 0.65 -0.37 16 23 N -0.43 -6.19 10.24 -190.31 -1.95 -8.14 16 24 C 0.01 0.09 11.24 83.95 0.94 1.04 16 25 C -0.25 -1.60 11.09 66.91 0.74 -0.86 16 26 S 0.26 3.05 23.03 -56.49 -1.30 1.75 16 27 C -0.16 -3.13 7.69 31.18 0.24 -2.89 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 31 H 0.42 7.61 8.70 -92.71 -0.81 6.80 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.13 0.98 8.11 -2.39 -0.02 0.96 16 34 H 0.42 4.86 8.37 -92.71 -0.78 4.08 16 35 H 0.21 0.57 8.06 -2.91 -0.02 0.54 16 36 H 0.22 -0.23 8.06 -2.91 -0.02 -0.25 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -83.20 363.95 -1.25 -84.45 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -0.45 Total: 15.91 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.11 Total: -0.82 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -6.35 Total: -96.51 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.11 Total: -41.22 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -2.46 Total: -7.74 kcal Total: -83.20 -1.25 -84.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688012131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.636 kcal (2) G-P(sol) polarization free energy of solvation -83.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds