Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29515 * 121.53688 * 2 1 4 4 S 1.69476 * 107.84749 * 179.97438 * 3 2 1 5 5 C 1.72015 * 96.02628 * 359.80191 * 4 3 2 6 6 C 1.37900 * 105.36453 * 0.33139 * 5 4 3 7 7 C 1.47336 * 123.08185 * 179.88877 * 6 5 4 8 8 O 1.21622 * 119.99698 * 175.11443 * 7 6 5 9 9 N 1.34778 * 120.00674 * 355.38769 * 7 6 5 10 10 C 1.47072 * 136.05285 * 4.92315 * 9 7 6 11 11 C 1.53750 * 87.88721 * 152.96260 * 10 9 7 12 12 N 1.46500 * 114.39256 * 272.67508 * 11 10 9 13 13 C 1.34781 * 119.99833 * 248.58197 * 12 11 10 14 14 O 1.21280 * 119.99999 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99865 * 180.02562 * 13 12 11 16 16 S 1.80993 * 109.46949 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99966 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99560 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00006 * 179.97438 * 17 16 15 20 20 N 1.31631 * 120.00202 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99653 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47104 * 90.00298 * 21 19 17 23 23 H 1.48508 * 109.46687 * 210.00112 * 21 19 17 24 24 H 1.48498 * 109.47542 * 329.99838 * 21 19 17 25 25 C 1.47061 * 136.06015 * 185.29032 * 9 7 6 26 26 H 1.09006 * 109.46717 * 270.02300 * 1 2 3 27 27 H 1.08998 * 109.47044 * 30.02178 * 1 2 3 28 28 H 1.08997 * 109.46998 * 150.02115 * 1 2 3 29 29 H 1.08003 * 127.31438 * 180.24925 * 5 4 3 30 30 H 1.09001 * 113.46385 * 267.69258 * 10 9 7 31 31 H 1.08997 * 113.46769 * 38.13385 * 10 9 7 32 32 H 1.08994 * 114.27146 * 139.79084 * 11 10 9 33 33 H 0.97001 * 120.00261 * 68.58729 * 12 11 10 34 34 H 1.09004 * 109.47152 * 300.00544 * 15 13 12 35 35 H 1.09000 * 109.47164 * 60.00176 * 15 13 12 36 36 H 0.96995 * 120.00193 * 180.02562 * 20 19 17 37 37 H 1.08997 * 113.46940 * 321.86721 * 25 9 7 38 38 H 1.09003 * 113.46909 * 92.31072 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8311 0.7028 0.0007 5 6 3.6017 -1.0020 0.0069 6 6 2.2351 -1.1868 0.0005 7 6 1.6036 -2.5180 0.0006 8 8 0.3944 -2.6173 0.0844 9 7 2.3663 -3.6258 -0.0867 10 6 3.8070 -3.9207 -0.1061 11 6 3.4743 -5.3019 0.4818 12 7 3.4008 -5.3352 1.9445 13 6 4.3353 -6.0015 2.6512 14 8 5.2372 -6.5730 2.0762 15 6 4.2594 -6.0361 4.1559 16 16 5.6452 -7.0008 4.8078 17 6 5.3176 -6.8786 6.5348 18 1 4.4590 -6.3239 6.8835 19 6 6.1622 -7.4962 7.4468 20 7 7.2082 -8.1727 7.0217 21 14 5.8143 -7.3672 9.2776 22 1 4.9439 -8.4950 9.6967 23 1 7.0936 -7.4233 10.0296 24 1 5.1290 -6.0809 9.5619 25 6 2.1241 -5.0710 -0.2111 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 4.3657 -1.7654 0.0131 30 1 4.2272 -3.9664 -1.1108 31 1 4.3883 -3.2898 0.5663 32 1 4.0583 -6.1204 0.0610 33 1 2.6796 -4.8778 2.4045 34 1 4.3095 -5.0195 4.5458 35 1 3.3200 -6.4966 4.4618 36 1 7.7983 -8.6045 7.6590 37 1 1.2718 -5.4201 0.3718 38 1 2.1008 -5.4200 -1.2435 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688592705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = 20.722343 kcal Electronic energy + Delta-G solvation = -23847.921750 eV Core-core repulsion = 20138.438627 eV Total energy + Delta-G solvation = -3709.483123 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29895 -39.86196 -38.65221 -37.61836 -33.77035 -32.48033 -32.41261 -30.01670 -29.88485 -28.49080 -26.60548 -25.54900 -24.79292 -22.46143 -20.97865 -20.34572 -19.68194 -18.22392 -17.97087 -17.28495 -16.85498 -16.30205 -16.08203 -15.79675 -15.10140 -14.96006 -14.87506 -14.84382 -14.10417 -13.86311 -13.67156 -13.49644 -13.31970 -13.21106 -12.73767 -12.66384 -12.59477 -12.29102 -12.03440 -11.75743 -11.29605 -11.11951 -11.10364 -11.07276 -10.80992 -10.20780 -10.09513 -9.87858 -9.65314 -9.31272 -9.16797 -9.10067 -9.01592 -8.32016 -6.56826 -6.26926 -3.98166 -0.01500 0.92802 1.33013 1.43044 2.30377 2.77937 2.83574 2.87239 3.19463 3.23438 3.27549 3.54494 3.87768 3.99788 4.12185 4.15516 4.45456 4.52236 4.75415 4.90422 4.92750 4.96758 5.00595 5.06964 5.08730 5.20769 5.24941 5.34564 5.41143 5.44465 5.67671 5.78586 5.86684 6.05416 6.24332 6.39367 7.20611 7.48338 7.55204 7.70310 8.30268 8.39754 9.18854 10.80473 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.002318 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.793283 B =12077.626293 C =12756.544646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 N -0.470 5.470 4 S 0.296 5.704 5 C -0.177 4.177 6 C -0.209 4.209 7 C 0.616 3.384 8 O -0.527 6.527 9 N -0.641 5.641 10 C 0.072 3.928 11 C 0.116 3.884 12 N -0.719 5.719 13 C 0.538 3.462 14 O -0.512 6.512 15 C -0.155 4.155 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.099 3.901 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.196 0.804 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.402 0.598 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.269 0.731 37 H 0.089 0.911 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 13.995 -18.123 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.012 4.012 3 N -0.291 5.291 4 S 0.452 5.548 5 C -0.326 4.326 6 C -0.231 4.231 7 C 0.404 3.596 8 O -0.405 6.405 9 N -0.377 5.377 10 C -0.053 4.053 11 C 0.008 3.992 12 N -0.372 5.372 13 C 0.325 3.675 14 O -0.385 6.385 15 C -0.305 4.305 16 S 0.169 5.831 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.024 4.024 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.125 0.875 29 H 0.213 0.787 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.149 0.851 33 H 0.237 0.763 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.994 15.165 -18.954 25.556 hybrid contribution -2.192 -0.588 2.041 3.052 sum -10.185 14.576 -16.913 24.541 Atomic orbital electron populations 1.20886 0.85294 1.04838 1.04426 1.21450 0.99605 0.86594 0.93582 1.76494 1.00402 1.26118 1.26100 1.84180 1.10557 0.95547 1.64510 1.27931 0.99787 1.04992 0.99928 1.20295 0.92181 0.95602 1.15009 1.16757 0.85301 0.81462 0.76041 1.90764 1.13145 1.85854 1.50718 1.49469 1.08974 1.06452 1.72794 1.23976 0.82629 0.96545 1.02124 1.22104 0.97048 0.97669 0.82345 1.45659 1.30655 1.56082 1.04834 1.20391 0.80742 0.76961 0.89453 1.90711 1.33300 1.42945 1.71539 1.23543 1.07691 1.06244 0.93048 1.85368 1.28530 1.65447 1.03773 1.22859 1.15145 1.39342 0.91114 0.90894 1.24990 0.94425 0.94453 0.99662 1.70007 1.13635 1.31491 1.35132 0.86164 0.77920 0.78688 0.82723 1.20229 1.20722 1.19677 1.23456 0.98851 0.78368 1.01751 0.89578 0.90739 0.87524 0.78676 0.87961 0.89553 0.85083 0.76296 0.89130 0.88997 0.92128 0.89298 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.45 36.01 0.34 -0.51 16 2 C 0.17 1.74 6.75 -83.20 -0.56 1.17 16 3 N -0.47 -5.10 11.97 32.50 0.39 -4.72 16 4 S 0.30 2.45 23.69 -107.50 -2.55 -0.10 16 5 C -0.18 -1.39 10.47 30.61 0.32 -1.07 16 6 C -0.21 -2.07 5.86 -105.95 -0.62 -2.69 16 7 C 0.62 6.60 8.01 -12.56 -0.10 6.50 16 8 O -0.53 -6.92 14.59 5.26 0.08 -6.84 16 9 N -0.64 -5.42 3.68 -186.38 -0.69 -6.10 16 10 C 0.07 0.48 6.67 -8.37 -0.06 0.42 16 11 C 0.12 0.98 4.61 -67.68 -0.31 0.67 16 12 N -0.72 -8.08 5.40 -53.49 -0.29 -8.36 16 13 C 0.54 8.80 7.85 -10.98 -0.09 8.72 16 14 O -0.51 -10.17 15.45 5.56 0.09 -10.08 16 15 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 16 S -0.06 -1.49 20.57 -107.50 -2.21 -3.71 16 17 C -0.54 -14.87 9.50 30.94 0.29 -14.57 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16 21 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.10 0.70 8.38 -8.50 -0.07 0.63 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.11 1.06 5.75 -51.93 -0.30 0.76 16 29 H 0.20 1.11 4.77 -52.48 -0.25 0.86 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.59 6.14 -51.93 -0.32 0.27 16 32 H 0.13 1.16 7.45 -51.93 -0.39 0.77 16 33 H 0.40 4.00 8.76 -40.82 -0.36 3.64 16 34 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 35 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -35.24 354.63 -8.97 -44.21 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.12 Total: 0.64 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.73 Total: -1.45 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.15 Total: -44.02 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.16 Total: -16.92 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -4.76 Total: -3.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.24 -8.97 -44.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688592705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.935 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds