Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29515 * 121.53688 * 2 1 4 4 S 1.69476 * 107.84749 * 179.97438 * 3 2 1 5 5 C 1.72015 * 96.02628 * 359.80191 * 4 3 2 6 6 C 1.37900 * 105.36453 * 0.33139 * 5 4 3 7 7 C 1.47336 * 123.08185 * 179.88877 * 6 5 4 8 8 O 1.21622 * 119.99698 * 175.11443 * 7 6 5 9 9 N 1.34778 * 120.00674 * 355.38769 * 7 6 5 10 10 C 1.47072 * 136.05285 * 4.92315 * 9 7 6 11 11 C 1.53750 * 87.88721 * 152.96260 * 10 9 7 12 12 N 1.46500 * 114.39256 * 272.67508 * 11 10 9 13 13 C 1.34781 * 119.99833 * 248.58197 * 12 11 10 14 14 O 1.21280 * 119.99999 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99865 * 180.02562 * 13 12 11 16 16 S 1.80993 * 109.46949 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99966 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99560 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00006 * 179.97438 * 17 16 15 20 20 N 1.31631 * 120.00202 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99653 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47104 * 90.00298 * 21 19 17 23 23 H 1.48508 * 109.46687 * 210.00112 * 21 19 17 24 24 H 1.48498 * 109.47542 * 329.99838 * 21 19 17 25 25 C 1.47061 * 136.06015 * 185.29032 * 9 7 6 26 26 H 1.09006 * 109.46717 * 270.02300 * 1 2 3 27 27 H 1.08998 * 109.47044 * 30.02178 * 1 2 3 28 28 H 1.08997 * 109.46998 * 150.02115 * 1 2 3 29 29 H 1.08003 * 127.31438 * 180.24925 * 5 4 3 30 30 H 1.09001 * 113.46385 * 267.69258 * 10 9 7 31 31 H 1.08997 * 113.46769 * 38.13385 * 10 9 7 32 32 H 1.08994 * 114.27146 * 139.79084 * 11 10 9 33 33 H 0.97001 * 120.00261 * 68.58729 * 12 11 10 34 34 H 1.09004 * 109.47152 * 300.00544 * 15 13 12 35 35 H 1.09000 * 109.47164 * 60.00176 * 15 13 12 36 36 H 0.96995 * 120.00193 * 180.02562 * 20 19 17 37 37 H 1.08997 * 113.46940 * 321.86721 * 25 9 7 38 38 H 1.09003 * 113.46909 * 92.31072 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8311 0.7028 0.0007 5 6 3.6017 -1.0020 0.0069 6 6 2.2351 -1.1868 0.0005 7 6 1.6036 -2.5180 0.0006 8 8 0.3944 -2.6173 0.0844 9 7 2.3663 -3.6258 -0.0867 10 6 3.8070 -3.9207 -0.1061 11 6 3.4743 -5.3019 0.4818 12 7 3.4008 -5.3352 1.9445 13 6 4.3353 -6.0015 2.6512 14 8 5.2372 -6.5730 2.0762 15 6 4.2594 -6.0361 4.1559 16 16 5.6452 -7.0008 4.8078 17 6 5.3176 -6.8786 6.5348 18 1 4.4590 -6.3239 6.8835 19 6 6.1622 -7.4962 7.4468 20 7 7.2082 -8.1727 7.0217 21 14 5.8143 -7.3672 9.2776 22 1 4.9439 -8.4950 9.6967 23 1 7.0936 -7.4233 10.0296 24 1 5.1290 -6.0809 9.5619 25 6 2.1241 -5.0710 -0.2111 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 4.3657 -1.7654 0.0131 30 1 4.2272 -3.9664 -1.1108 31 1 4.3883 -3.2898 0.5663 32 1 4.0583 -6.1204 0.0610 33 1 2.6796 -4.8778 2.4045 34 1 4.3095 -5.0195 4.5458 35 1 3.3200 -6.4966 4.4618 36 1 7.7983 -8.6045 7.6590 37 1 1.2718 -5.4201 0.3718 38 1 2.1008 -5.4200 -1.2435 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688592705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = -5.245771 kcal Electronic energy + Delta-G solvation = -23849.047812 eV Core-core repulsion = 20138.438627 eV Total energy + Delta-G solvation = -3710.609185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.04199 -40.76050 -39.68469 -38.45497 -34.83922 -34.57424 -33.18040 -31.17051 -30.60311 -29.52190 -27.65379 -27.17685 -25.50883 -23.30076 -22.00894 -21.18474 -20.35778 -19.85136 -18.93361 -18.18953 -17.76729 -17.34553 -16.92462 -16.87313 -16.67191 -16.32949 -16.04407 -15.56836 -15.48770 -14.76858 -14.62320 -14.57452 -14.34156 -14.16874 -13.94096 -13.44756 -13.40786 -13.32149 -13.16048 -12.92029 -12.88711 -12.61503 -12.44371 -12.00521 -11.83164 -11.73127 -11.14106 -11.02040 -10.93692 -10.85952 -10.27826 -10.17570 -9.98431 -9.67919 -8.64628 -8.34775 -6.11545 -0.68349 0.27784 0.63425 0.67585 1.26543 1.42077 1.46422 1.55428 1.56706 1.64796 2.07744 2.19367 2.28004 2.99613 3.21124 3.30653 3.35709 3.45240 3.78630 3.85332 3.92925 4.11632 4.28463 4.29892 4.36303 4.41803 4.52452 4.52905 4.60565 4.66043 4.67525 4.74307 4.82624 5.16203 5.42580 5.46098 5.53331 6.20042 6.38921 6.53143 6.95907 7.07380 7.18345 8.74132 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.002318 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.793283 B =12077.626293 C =12756.544646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.155 3.845 3 N -0.502 5.502 4 S 0.324 5.676 5 C -0.161 4.161 6 C -0.229 4.229 7 C 0.613 3.387 8 O -0.560 6.560 9 N -0.642 5.642 10 C 0.078 3.922 11 C 0.106 3.894 12 N -0.698 5.698 13 C 0.545 3.455 14 O -0.551 6.551 15 C -0.135 4.135 16 S -0.140 6.140 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.016 3.984 20 N -0.909 5.909 21 Si 0.995 3.005 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.260 1.260 25 C 0.106 3.894 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.220 0.780 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.411 0.589 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.082 0.918 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 14.869 -18.450 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 N -0.324 5.324 4 S 0.480 5.520 5 C -0.310 4.310 6 C -0.250 4.250 7 C 0.402 3.598 8 O -0.441 6.441 9 N -0.376 5.376 10 C -0.045 4.045 11 C -0.001 4.001 12 N -0.350 5.350 13 C 0.332 3.668 14 O -0.428 6.428 15 C -0.286 4.286 16 S 0.087 5.913 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.189 4.189 20 N -0.546 5.546 21 Si 0.817 3.183 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.184 1.184 25 C -0.016 4.016 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.236 0.764 30 H 0.155 0.845 31 H 0.107 0.893 32 H 0.150 0.850 33 H 0.248 0.752 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.528 16.055 -19.312 26.522 hybrid contribution -2.048 -0.809 2.030 2.995 sum -10.576 15.246 -17.282 25.357 Atomic orbital electron populations 1.20836 0.85109 1.04768 1.04355 1.21630 1.00115 0.86874 0.93595 1.76382 1.02030 1.26849 1.27114 1.84074 1.08804 0.95482 1.63675 1.28212 0.99460 1.05435 0.97909 1.20287 0.92909 0.95173 1.16653 1.16857 0.85039 0.82076 0.75818 1.90747 1.14495 1.86353 1.52477 1.49504 1.09777 1.06482 1.71861 1.24128 0.81729 0.94709 1.03918 1.22308 0.98512 0.99081 0.80193 1.45389 1.29175 1.54236 1.06231 1.19884 0.81216 0.77297 0.88452 1.90704 1.35202 1.45070 1.71821 1.23397 1.04644 1.05564 0.94986 1.85456 1.33411 1.67920 1.04522 1.23200 1.15356 1.39293 0.91730 0.90199 1.26059 0.94061 0.93878 1.04942 1.70159 1.14846 1.32634 1.36918 0.85009 0.77952 0.79208 0.76174 1.19405 1.20267 1.18427 1.23574 0.97489 0.77478 1.03100 0.89636 0.89894 0.88400 0.76380 0.84481 0.89276 0.85026 0.75245 0.87560 0.87530 0.91966 0.89922 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.45 71.24 0.67 -0.97 16 2 C 0.15 3.15 6.75 43.14 0.29 3.44 16 3 N -0.50 -10.47 11.97 -51.09 -0.61 -11.08 16 4 S 0.32 4.76 23.69 -56.49 -1.34 3.42 16 5 C -0.16 -2.13 10.47 67.74 0.71 -1.42 16 6 C -0.23 -4.19 5.86 -20.72 -0.12 -4.31 16 7 C 0.61 12.19 8.01 86.64 0.69 12.88 16 8 O -0.56 -14.37 14.59 -4.10 -0.06 -14.43 16 9 N -0.64 -9.10 3.68 -861.83 -3.17 -12.28 16 10 C 0.08 0.77 6.67 83.27 0.56 1.33 16 11 C 0.11 1.50 4.61 45.55 0.21 1.71 16 12 N -0.70 -14.17 5.40 -441.52 -2.38 -16.55 16 13 C 0.55 17.21 7.85 87.66 0.69 17.90 16 14 O -0.55 -21.72 15.45 -3.03 -0.05 -21.77 16 15 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 16 S -0.14 -7.39 20.57 -56.49 -1.16 -8.55 16 17 C -0.55 -30.46 9.50 67.95 0.65 -29.82 16 18 H 0.08 4.16 7.80 -2.91 -0.02 4.13 16 19 C 0.02 0.87 5.49 84.86 0.47 1.34 16 20 N -0.91 -54.49 13.22 21.65 0.29 -54.20 16 21 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 25 C 0.11 1.19 8.38 83.18 0.70 1.89 16 26 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 1.98 5.75 -2.39 -0.01 1.96 16 29 H 0.22 1.68 4.77 -2.91 -0.01 1.66 16 30 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.88 6.14 -2.39 -0.01 0.87 16 32 H 0.13 2.01 7.45 -2.39 -0.02 1.99 16 33 H 0.41 7.17 8.76 -92.71 -0.81 6.36 16 34 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.27 15.11 8.31 -92.71 -0.77 14.33 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -78.62 354.63 -0.20 -78.82 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.32 Total: 12.28 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.95 Total: -0.53 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -5.88 Total: -94.11 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.11 Total: -36.20 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.50 Total: -5.14 kcal Total: -78.62 -0.20 -78.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688592705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.576 kcal (2) G-P(sol) polarization free energy of solvation -78.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds