Wall clock time and date at job start Sat Apr 11 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48502 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46991 * 299.99595 * 3 2 1 6 6 H 1.48501 * 109.46940 * 59.99841 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 H 1.08994 * 112.73607 * 303.76497 * 15 14 13 17 17 C 1.53498 * 113.46940 * 172.94012 * 15 14 13 18 18 C 1.53492 * 83.34507 * 219.15378 * 17 15 14 19 19 N 1.47065 * 87.98739 * 26.06556 * 18 17 15 20 20 C 1.34781 * 136.05804 * 152.90867 * 19 18 17 21 21 O 1.21622 * 119.99740 * 179.97438 * 20 19 18 22 22 C 1.47252 * 119.99864 * 359.95985 * 20 19 18 23 23 N 1.30560 * 125.54053 * 179.97438 * 22 20 19 24 24 C 1.30702 * 115.90499 * 180.02562 * 23 22 20 25 25 C 1.34232 * 115.78480 * 359.97438 * 24 23 22 26 26 S 1.71072 * 109.09285 * 359.73234 * 25 24 23 27 27 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 29 29 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 30 30 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 31 31 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 32 32 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 33 33 H 1.09003 * 114.20603 * 332.73962 * 17 15 14 34 34 H 1.08998 * 114.20323 * 105.56120 * 17 15 14 35 35 H 1.09001 * 113.46704 * 271.28829 * 18 17 15 36 36 H 1.09003 * 113.52343 * 140.85643 * 18 17 15 37 37 H 1.08008 * 122.10682 * 179.97438 * 24 23 22 38 38 H 1.07999 * 125.45395 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 6 3.5025 -8.6985 0.0125 16 1 4.1844 -8.5454 -0.8239 17 6 3.0725 -10.1610 0.1927 18 6 4.3293 -10.2356 1.0706 19 7 4.1826 -8.7925 1.3130 20 6 4.5224 -7.9338 2.2948 21 8 4.2491 -6.7532 2.1916 22 6 5.2242 -8.4252 3.4924 23 7 5.6033 -7.6922 4.5041 24 6 6.2144 -8.3252 5.4707 25 6 6.3712 -9.6468 5.2956 26 16 5.6818 -10.0983 3.7964 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7313 0.8906 29 1 3.1245 -3.7313 -0.8893 30 1 3.8009 -6.1835 0.0004 31 1 1.7216 -7.8708 0.8982 32 1 1.7219 -7.8795 -0.8818 33 1 2.1377 -10.2880 0.7387 34 1 3.1270 -10.7581 -0.7175 35 1 5.2317 -10.4929 0.5160 36 1 4.1985 -10.8418 1.9670 37 1 6.5707 -7.8169 6.3545 38 1 6.8511 -10.3183 5.9920 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689509162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:22 Heat of formation + Delta-G solvation = -4.807644 kcal Electronic energy + Delta-G solvation = -24064.382636 eV Core-core repulsion = 20353.792450 eV Total energy + Delta-G solvation = -3710.590186 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.84184 -40.76390 -40.26942 -38.75469 -35.62916 -34.61750 -32.34435 -31.46853 -30.76351 -28.76714 -27.66445 -27.23017 -24.33293 -23.79505 -21.78065 -21.47395 -20.34744 -19.94630 -19.23200 -17.98069 -17.69593 -17.54626 -17.45113 -16.91624 -16.58247 -16.48823 -16.00346 -15.89085 -15.46813 -14.97405 -14.78265 -14.61168 -14.49345 -14.39416 -13.97678 -13.66629 -13.32134 -13.19771 -13.02674 -12.92029 -12.73134 -12.64960 -12.42051 -11.86600 -11.69841 -11.42487 -11.18351 -10.94033 -10.77288 -10.71214 -10.33666 -10.07319 -10.03930 -9.83474 -8.70306 -8.37653 -6.16240 -0.82802 0.11422 0.59069 1.22468 1.27959 1.37636 1.38946 1.44857 1.56894 1.62122 2.12036 2.24164 2.34876 2.95688 3.05810 3.28574 3.38825 3.69755 3.81614 3.96009 4.00428 4.14239 4.21796 4.24109 4.29512 4.36144 4.40489 4.45669 4.56913 4.74202 4.87665 4.97949 5.04724 5.29766 5.38262 5.45707 6.17108 6.39303 6.46206 6.58058 6.92841 7.02834 7.23561 8.72295 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.002562 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.402504 B =10925.843397 C =12409.108838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 1.003 2.997 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.077 0.923 9 S -0.144 6.144 10 C -0.127 4.127 11 C 0.536 3.464 12 O -0.569 6.569 13 N -0.701 5.701 14 C 0.113 3.887 15 C 0.124 3.876 16 H 0.134 0.866 17 C -0.119 4.119 18 C 0.087 3.913 19 N -0.646 5.646 20 C 0.606 3.394 21 O -0.543 6.543 22 C -0.050 4.050 23 N -0.452 5.452 24 C 0.001 3.999 25 C -0.255 4.255 26 S 0.278 5.722 27 H 0.273 0.727 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.408 0.592 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.193 0.807 38 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.237 -34.034 4.368 38.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.824 3.176 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.696 4.696 8 H 0.095 0.905 9 S 0.083 5.917 10 C -0.278 4.278 11 C 0.321 3.679 12 O -0.449 6.449 13 N -0.353 5.353 14 C -0.011 4.011 15 C 0.022 3.978 16 H 0.152 0.848 17 C -0.157 4.157 18 C -0.034 4.034 19 N -0.383 5.383 20 C 0.392 3.608 21 O -0.420 6.420 22 C -0.323 4.323 23 N -0.169 5.169 24 C -0.155 4.155 25 C -0.395 4.395 26 S 0.532 5.468 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.245 0.755 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.111 0.889 37 H 0.209 0.791 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 15.798 -33.892 3.910 37.597 hybrid contribution 2.243 2.400 1.375 3.561 sum 18.041 -31.492 5.285 36.677 Atomic orbital electron populations 1.70193 1.07919 1.28645 1.47914 1.26172 0.96077 1.03345 0.93583 0.84862 0.78361 0.76053 0.78362 1.18430 1.19248 1.19728 1.23217 0.95190 0.92143 1.59098 0.90479 1.85395 1.10303 0.99025 1.96995 1.23320 1.03510 0.95241 1.05737 1.19901 0.86192 0.86651 0.75129 1.90648 1.17050 1.86145 1.51034 1.45671 1.09935 1.05253 1.74462 1.21751 0.97024 0.80111 1.02261 1.23457 0.92392 0.96516 0.85445 0.84821 1.23474 0.97974 0.91593 1.02637 1.23590 1.01010 0.78222 1.00551 1.49773 1.58264 1.11740 1.18521 1.16590 0.78250 0.84537 0.81380 1.90892 1.54550 1.17398 1.79148 1.27248 1.09916 0.95539 0.99604 1.66595 1.10082 1.39164 1.01095 1.22177 1.01532 0.92210 0.99580 1.27512 1.06766 1.00551 1.04690 1.83281 1.45806 1.06638 1.11112 0.91841 0.89221 0.87479 0.75542 0.93732 0.89059 0.88299 0.84088 0.85209 0.88898 0.79054 0.75990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.76 13.22 21.65 0.29 -58.48 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 46.60 29.55 68.60 2.03 48.62 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.55 -34.18 9.50 67.95 0.65 -33.53 16 8 H 0.08 4.56 7.80 -2.91 -0.02 4.54 16 9 S -0.14 -8.85 20.57 -56.49 -1.16 -10.01 16 10 C -0.13 -6.09 6.16 71.24 0.44 -5.65 16 11 C 0.54 23.74 7.85 87.66 0.69 24.43 16 12 O -0.57 -29.58 15.86 -3.04 -0.05 -29.62 16 13 N -0.70 -22.81 4.17 -463.05 -1.93 -24.74 16 14 C 0.11 2.70 5.36 86.38 0.46 3.17 16 15 C 0.12 1.53 4.07 41.79 0.17 1.70 16 16 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 17 C -0.12 -0.39 8.03 30.93 0.25 -0.14 16 18 C 0.09 0.33 7.26 83.18 0.60 0.93 16 19 N -0.65 -10.20 3.57 -837.81 -2.99 -13.19 16 20 C 0.61 15.96 7.96 86.61 0.69 16.65 16 21 O -0.54 -20.22 14.96 -4.10 -0.06 -20.29 16 22 C -0.05 -1.13 7.45 87.25 0.65 -0.48 16 23 N -0.45 -12.19 10.59 -190.31 -2.02 -14.21 16 24 C 0.00 0.02 11.24 83.95 0.94 0.96 16 25 C -0.25 -2.39 11.09 66.90 0.74 -1.65 16 26 S 0.28 2.56 20.05 -56.49 -1.13 1.43 16 27 H 0.27 16.16 8.31 -92.70 -0.77 15.39 16 28 H 0.09 4.31 8.14 -2.39 -0.02 4.29 16 29 H 0.11 4.62 8.14 -2.40 -0.02 4.60 16 30 H 0.41 12.20 7.35 -92.71 -0.68 11.52 16 31 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 33 H 0.10 0.51 8.12 -2.39 -0.02 0.49 16 34 H 0.14 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.09 0.16 6.37 -2.39 -0.02 0.15 16 37 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 38 H 0.22 0.21 8.06 -2.91 -0.02 0.19 16 Total: -1.00 -99.30 356.40 0.15 -99.15 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.43 Total: 13.70 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.75 Total: 7.64 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -6.65 Total: -110.62 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.11 Total: -49.91 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 16 Polarization: -6.29 SS G_CDS: -2.29 Total: -8.58 kcal Total: -99.30 0.15 -99.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.340 kcal (2) G-P(sol) polarization free energy of solvation -99.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds