Wall clock time and date at job start Sat Apr 11 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99563 * 2 1 4 4 H 1.48506 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47023 * 299.99884 * 3 2 1 6 6 H 1.48492 * 109.47323 * 60.00123 * 3 2 1 7 7 C 1.38796 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00580 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99793 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00095 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47209 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99997 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00002 * 179.97438 * 11 10 9 14 14 C 1.46964 * 120.59196 * 179.97438 * 13 11 10 15 15 C 1.53367 * 108.63333 * 235.24702 * 14 13 11 16 16 N 1.46968 * 108.63573 * 310.57421 * 15 14 13 17 17 C 1.34769 * 120.59783 * 235.20156 * 16 15 14 18 18 O 1.21682 * 119.99949 * 356.25111 * 17 16 15 19 19 C 1.46684 * 120.00304 * 176.51910 * 17 16 15 20 20 C 1.35658 * 126.13666 * 224.60071 * 19 17 16 21 21 N 1.30932 * 114.19484 * 179.85109 * 20 19 17 22 22 C 1.29432 * 117.36385 * 0.45479 * 21 20 19 23 23 S 1.70950 * 110.39111 * 359.74790 * 22 21 20 24 24 C 1.46969 * 118.80790 * 55.48205 * 16 15 14 25 25 C 1.46960 * 120.59268 * 0.02562 * 13 11 10 26 26 H 0.96997 * 120.00596 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47054 * 59.99666 * 10 9 7 28 28 H 1.09000 * 109.46966 * 300.00318 * 10 9 7 29 29 H 1.09005 * 109.60960 * 115.50426 * 14 13 11 30 30 H 1.08999 * 109.75590 * 355.07727 * 14 13 11 31 31 H 1.09003 * 109.60791 * 190.83345 * 15 14 13 32 32 H 1.08994 * 109.61440 * 70.32395 * 15 14 13 33 33 H 1.08008 * 122.90167 * 0.02562 * 20 19 17 34 34 H 1.08002 * 124.80686 * 179.77203 * 22 21 20 35 35 H 1.08998 * 109.61356 * 64.26519 * 24 16 15 36 36 H 1.08996 * 109.61055 * 184.77286 * 24 16 15 37 37 H 1.08997 * 109.61513 * 244.49614 * 25 13 11 38 38 H 1.09003 * 109.61146 * 5.01249 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0010 13 7 2.8444 -6.3431 -0.0003 14 6 2.3433 -7.7246 0.0009 15 6 2.9563 -8.4672 1.1946 16 7 4.4084 -8.2404 1.1934 17 6 5.2652 -9.2807 1.1940 18 8 4.8403 -10.4188 1.2643 19 6 6.7102 -9.0409 1.1156 20 6 7.5906 -9.7096 0.3295 21 7 8.8292 -9.3004 0.4427 22 6 9.0641 -8.3380 1.2756 23 16 7.6147 -7.8376 2.0316 24 6 4.9094 -6.8588 1.1979 25 6 4.2964 -6.1162 -0.0008 26 1 -0.4851 0.8400 -0.0004 27 1 3.1246 -3.7313 0.8894 28 1 3.1246 -3.7312 -0.8905 29 1 2.6333 -8.2197 -0.9260 30 1 1.2570 -7.7225 0.0900 31 1 2.7527 -9.5343 1.1053 32 1 2.5274 -8.0867 2.1216 33 1 7.2950 -10.5085 -0.3345 34 1 10.0377 -7.9112 1.4659 35 1 4.6163 -6.3663 2.1251 36 1 5.9959 -6.8633 1.1110 37 1 4.7258 -6.4964 -0.9277 38 1 4.5000 -5.0491 0.0889 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703065107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:25 Heat of formation + Delta-G solvation = 1.397594 kcal Electronic energy + Delta-G solvation = -24346.057762 eV Core-core repulsion = 20635.736655 eV Total energy + Delta-G solvation = -3710.321107 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93430 -40.01898 -39.14230 -37.06109 -34.23143 -32.49225 -32.47052 -30.91062 -29.53305 -27.81460 -26.32645 -25.54143 -24.25472 -23.30813 -21.62509 -20.21745 -19.64354 -18.52524 -17.72557 -17.12102 -16.95477 -16.45748 -15.93337 -15.80420 -15.60495 -15.32561 -14.86026 -14.72011 -14.50155 -14.28141 -14.06975 -13.83350 -13.42771 -13.37399 -12.92384 -12.59820 -12.15150 -12.01331 -11.98471 -11.86749 -11.60816 -11.12002 -11.08132 -10.80676 -10.66308 -10.20583 -9.87468 -9.85624 -9.66632 -9.47738 -9.44338 -9.13138 -8.53956 -8.29825 -6.57371 -6.27564 -3.98947 -0.18345 0.59345 1.02606 2.04640 2.28156 2.59126 2.86375 2.91179 3.17288 3.20673 3.26478 3.48195 3.73462 4.01428 4.13791 4.35636 4.44717 4.64237 4.73223 4.77708 4.81219 4.92260 5.01196 5.07981 5.15439 5.27229 5.39662 5.46832 5.53026 5.60231 5.67662 5.76225 5.98000 5.99672 6.39345 6.77879 7.08137 7.35956 7.53781 7.57438 8.29102 8.39944 9.17887 10.79871 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.002643 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.758039 B =10591.867699 C =12042.601018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.536 3.464 12 O -0.511 6.511 13 N -0.622 5.622 14 C 0.100 3.900 15 C 0.100 3.900 16 N -0.602 5.602 17 C 0.598 3.402 18 O -0.521 6.521 19 C -0.289 4.289 20 C 0.109 3.891 21 N -0.473 5.473 22 C 0.022 3.978 23 S 0.187 5.813 24 C 0.080 3.920 25 C 0.098 3.902 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.185 0.815 34 H 0.206 0.794 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.852 -16.466 3.473 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.324 3.676 12 O -0.384 6.384 13 N -0.359 5.359 14 C -0.024 4.024 15 C -0.022 4.022 16 N -0.335 5.335 17 C 0.384 3.616 18 O -0.398 6.398 19 C -0.413 4.413 20 C -0.047 4.047 21 N -0.186 5.186 22 C -0.272 4.272 23 S 0.441 5.559 24 C -0.045 4.045 25 C -0.027 4.027 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.202 0.798 34 H 0.223 0.777 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.919 -16.691 3.977 23.406 hybrid contribution 1.998 0.734 -0.558 2.201 sum 17.917 -15.957 3.419 24.235 Atomic orbital electron populations 1.70021 1.05971 1.27438 1.46768 1.24998 0.95028 0.99072 0.94482 0.86113 0.79554 0.81855 0.77947 1.19594 1.20555 1.20547 1.22881 0.94890 0.91537 1.59054 0.90852 1.85462 1.04757 0.96392 1.96699 1.23564 1.06705 0.95263 1.04744 1.20399 0.86203 0.86153 0.74805 1.90708 1.15072 1.85096 1.47570 1.48065 1.05999 1.05849 1.76002 1.21918 1.01496 0.81381 0.97574 1.22147 0.77917 1.02684 0.99467 1.47930 1.06970 1.05935 1.72704 1.16794 0.83476 0.84733 0.76588 1.90859 1.77841 1.21445 1.49697 1.25727 0.99582 1.06546 1.09484 1.22164 0.85508 0.98926 0.98151 1.66271 1.20745 1.12555 1.19044 1.28963 1.04319 0.97272 0.96685 1.84251 0.99804 1.31450 1.40361 1.22679 0.99809 0.81582 1.00447 1.22121 0.80745 1.02099 0.97729 0.92172 0.89168 0.89152 0.91181 0.87255 0.87525 0.90217 0.79766 0.77715 0.89464 0.88797 0.90745 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.22 55.49 0.73 -24.79 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.65 9.50 30.94 0.29 -14.36 16 8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.85 4.50 36.00 0.16 -2.69 16 11 C 0.54 9.41 7.72 -10.99 -0.08 9.32 16 12 O -0.51 -10.98 15.27 5.55 0.08 -10.90 16 13 N -0.62 -7.96 2.95 -172.25 -0.51 -8.47 16 14 C 0.10 1.12 6.59 -3.60 -0.02 1.10 16 15 C 0.10 1.00 6.58 -3.60 -0.02 0.97 16 16 N -0.60 -5.83 2.94 -173.79 -0.51 -6.34 16 17 C 0.60 6.47 7.56 -12.85 -0.10 6.37 16 18 O -0.52 -7.24 16.51 5.20 0.09 -7.16 16 19 C -0.29 -2.55 5.52 -37.10 -0.20 -2.75 16 20 C 0.11 0.95 11.30 -18.86 -0.21 0.74 16 21 N -0.47 -4.04 10.51 -15.38 -0.16 -4.20 16 22 C 0.02 0.13 12.22 51.75 0.63 0.76 16 23 S 0.19 1.10 20.06 -107.50 -2.16 -1.05 16 24 C 0.08 0.64 6.15 -3.39 -0.02 0.62 16 25 C 0.10 0.91 6.52 -3.40 -0.02 0.89 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.09 1.52 7.72 -51.92 -0.40 1.12 16 28 H 0.09 1.56 7.91 -51.92 -0.41 1.15 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.11 1.36 7.00 -51.93 -0.36 1.00 16 31 H 0.11 1.05 7.01 -51.93 -0.36 0.69 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.19 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.21 0.47 8.06 -52.49 -0.42 0.04 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.61 3.90 -29.67 -0.12 0.49 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.93 5.91 -51.93 -0.31 0.63 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -36.08 346.82 -8.18 -44.27 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.04 Total: -1.42 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 0.30 Total: 2.91 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.45 Total: -43.80 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.17 Total: -18.06 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -4.37 Total: -4.83 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.08 -8.18 -44.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703065107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.663 kcal (2) G-P(sol) polarization free energy of solvation -36.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds