Wall clock time and date at job start Sat Apr 11 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99563 * 2 1 4 4 H 1.48506 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47023 * 299.99884 * 3 2 1 6 6 H 1.48492 * 109.47323 * 60.00123 * 3 2 1 7 7 C 1.38796 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00580 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99793 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00095 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47209 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99997 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00002 * 179.97438 * 11 10 9 14 14 C 1.46964 * 120.59196 * 179.97438 * 13 11 10 15 15 C 1.53367 * 108.63333 * 235.24702 * 14 13 11 16 16 N 1.46968 * 108.63573 * 310.57421 * 15 14 13 17 17 C 1.34769 * 120.59783 * 235.20156 * 16 15 14 18 18 O 1.21682 * 119.99949 * 356.25111 * 17 16 15 19 19 C 1.46684 * 120.00304 * 176.51910 * 17 16 15 20 20 C 1.35658 * 126.13666 * 224.60071 * 19 17 16 21 21 N 1.30932 * 114.19484 * 179.85109 * 20 19 17 22 22 C 1.29432 * 117.36385 * 0.45479 * 21 20 19 23 23 S 1.70950 * 110.39111 * 359.74790 * 22 21 20 24 24 C 1.46969 * 118.80790 * 55.48205 * 16 15 14 25 25 C 1.46960 * 120.59268 * 0.02562 * 13 11 10 26 26 H 0.96997 * 120.00596 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47054 * 59.99666 * 10 9 7 28 28 H 1.09000 * 109.46966 * 300.00318 * 10 9 7 29 29 H 1.09005 * 109.60960 * 115.50426 * 14 13 11 30 30 H 1.08999 * 109.75590 * 355.07727 * 14 13 11 31 31 H 1.09003 * 109.60791 * 190.83345 * 15 14 13 32 32 H 1.08994 * 109.61440 * 70.32395 * 15 14 13 33 33 H 1.08008 * 122.90167 * 0.02562 * 20 19 17 34 34 H 1.08002 * 124.80686 * 179.77203 * 22 21 20 35 35 H 1.08998 * 109.61356 * 64.26519 * 24 16 15 36 36 H 1.08996 * 109.61055 * 184.77286 * 24 16 15 37 37 H 1.08997 * 109.61513 * 244.49614 * 25 13 11 38 38 H 1.09003 * 109.61146 * 5.01249 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0010 13 7 2.8444 -6.3431 -0.0003 14 6 2.3433 -7.7246 0.0009 15 6 2.9563 -8.4672 1.1946 16 7 4.4084 -8.2404 1.1934 17 6 5.2652 -9.2807 1.1940 18 8 4.8403 -10.4188 1.2643 19 6 6.7102 -9.0409 1.1156 20 6 7.5906 -9.7096 0.3295 21 7 8.8292 -9.3004 0.4427 22 6 9.0641 -8.3380 1.2756 23 16 7.6147 -7.8376 2.0316 24 6 4.9094 -6.8588 1.1979 25 6 4.2964 -6.1162 -0.0008 26 1 -0.4851 0.8400 -0.0004 27 1 3.1246 -3.7313 0.8894 28 1 3.1246 -3.7312 -0.8905 29 1 2.6333 -8.2197 -0.9260 30 1 1.2570 -7.7225 0.0900 31 1 2.7527 -9.5343 1.1053 32 1 2.5274 -8.0867 2.1216 33 1 7.2950 -10.5085 -0.3345 34 1 10.0377 -7.9112 1.4659 35 1 4.6163 -6.3663 2.1251 36 1 5.9959 -6.8633 1.1110 37 1 4.7258 -6.4964 -0.9277 38 1 4.5000 -5.0491 0.0889 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703065107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:24 Heat of formation + Delta-G solvation = -24.474092 kcal Electronic energy + Delta-G solvation = -24347.179642 eV Core-core repulsion = 20635.736655 eV Total energy + Delta-G solvation = -3711.442987 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.78151 -40.87646 -40.09444 -38.12219 -35.28848 -34.55814 -33.34032 -31.59219 -30.84258 -28.75450 -27.64744 -26.93377 -25.08661 -24.17699 -22.45915 -21.01352 -20.43170 -19.88989 -19.06527 -18.20878 -17.71717 -17.43591 -17.04361 -16.85456 -16.82195 -16.56189 -16.08778 -15.82436 -15.32044 -15.16768 -14.99305 -14.82702 -14.66575 -14.47816 -14.30493 -13.66949 -13.46869 -13.14504 -12.90348 -12.87547 -12.74300 -12.63973 -12.60552 -12.43111 -11.67577 -11.47111 -11.13887 -10.96392 -10.75703 -10.52599 -10.46837 -10.22425 -9.99921 -9.53123 -8.64853 -8.32476 -6.10388 -0.73216 0.05588 0.51391 1.23333 1.36451 1.43726 1.43993 1.54654 1.56058 1.64629 1.91057 2.10606 2.29156 3.02431 3.16972 3.22974 3.42659 3.57484 3.64009 3.90129 3.98439 4.05685 4.10844 4.19168 4.30837 4.32757 4.41044 4.44029 4.51842 4.60644 4.69818 4.83955 4.97478 5.16960 5.37097 5.45159 5.98876 6.19352 6.22957 6.55237 6.77488 7.07794 7.09533 8.76861 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.002643 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.758039 B =10591.867699 C =12042.601018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.087 0.913 9 S -0.156 6.156 10 C -0.125 4.125 11 C 0.537 3.463 12 O -0.561 6.561 13 N -0.609 5.609 14 C 0.102 3.898 15 C 0.108 3.892 16 N -0.601 5.601 17 C 0.600 3.400 18 O -0.561 6.561 19 C -0.319 4.319 20 C 0.108 3.892 21 N -0.503 5.503 22 C 0.035 3.965 23 S 0.232 5.768 24 C 0.082 3.918 25 C 0.091 3.909 26 H 0.270 0.730 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.183 0.817 34 H 0.242 0.758 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.579 -15.695 3.952 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.688 4.688 8 H 0.105 0.895 9 S 0.072 5.928 10 C -0.276 4.276 11 C 0.325 3.675 12 O -0.439 6.439 13 N -0.344 5.344 14 C -0.021 4.021 15 C -0.015 4.015 16 N -0.333 5.333 17 C 0.388 3.612 18 O -0.441 6.441 19 C -0.443 4.443 20 C -0.050 4.050 21 N -0.216 5.216 22 C -0.259 4.259 23 S 0.487 5.513 24 C -0.041 4.041 25 C -0.032 4.032 26 H 0.079 0.921 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.099 0.901 33 H 0.200 0.800 34 H 0.258 0.742 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 19.707 -15.930 4.465 25.731 hybrid contribution 0.969 0.374 -0.689 1.247 sum 20.677 -15.556 3.776 26.149 Atomic orbital electron populations 1.70193 1.08051 1.28484 1.48260 1.26125 0.95912 1.03361 0.93858 0.84914 0.78855 0.76386 0.77858 1.17573 1.20316 1.20165 1.23228 0.95429 0.91707 1.58457 0.89499 1.85691 1.10671 0.99441 1.97033 1.23389 1.03526 0.93832 1.06869 1.20199 0.85907 0.86607 0.74797 1.90697 1.17214 1.85672 1.50301 1.48016 1.07151 1.05327 1.73894 1.21973 1.00800 0.80539 0.98803 1.22013 0.78336 1.02418 0.98757 1.47982 1.06627 1.06549 1.72172 1.17035 0.84356 0.84207 0.75632 1.90834 1.78744 1.22960 1.51544 1.25571 0.98653 1.08776 1.11262 1.22241 0.85836 0.98801 0.98079 1.66329 1.20554 1.14095 1.20657 1.29618 1.05755 0.95755 0.94777 1.84050 0.98785 1.29566 1.38878 1.22789 1.00847 0.80333 1.00165 1.22441 0.78262 1.03273 0.99252 0.92106 0.86618 0.87076 0.89950 0.88813 0.87542 0.90133 0.80003 0.74217 0.88618 0.86871 0.89094 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.86 13.22 21.65 0.29 -54.58 16 2 C 0.01 0.66 5.49 84.86 0.47 1.13 16 3 Si 1.00 41.89 29.55 68.60 2.03 43.91 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -29.36 9.50 67.95 0.65 -28.71 16 8 H 0.09 4.30 7.80 -2.91 -0.02 4.28 16 9 S -0.16 -8.27 20.57 -56.49 -1.16 -9.43 16 10 C -0.13 -4.52 4.50 71.23 0.32 -4.20 16 11 C 0.54 18.52 7.72 87.66 0.68 19.20 16 12 O -0.56 -24.77 15.27 -3.05 -0.05 -24.82 16 13 N -0.61 -14.62 2.95 -817.26 -2.41 -17.03 16 14 C 0.10 2.22 6.59 86.41 0.57 2.79 16 15 C 0.11 2.05 6.58 86.41 0.57 2.62 16 16 N -0.60 -10.60 2.94 -821.97 -2.42 -13.02 16 17 C 0.60 12.32 7.56 86.45 0.65 12.97 16 18 O -0.56 -15.56 16.51 -4.29 -0.07 -15.63 16 19 C -0.32 -5.04 5.52 23.88 0.13 -4.91 16 20 C 0.11 1.75 11.30 84.23 0.95 2.70 16 21 N -0.50 -7.47 10.51 -202.57 -2.13 -9.60 16 22 C 0.03 0.28 12.22 130.60 1.60 1.88 16 23 S 0.23 1.96 20.06 -56.49 -1.13 0.83 16 24 C 0.08 1.07 6.15 86.55 0.53 1.61 16 25 C 0.09 1.41 6.52 86.55 0.56 1.98 16 26 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.12 3.58 7.72 -2.40 -0.02 3.57 16 28 H 0.11 3.56 7.91 -2.40 -0.02 3.54 16 29 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.09 2.39 7.00 -2.39 -0.02 2.38 16 31 H 0.11 2.09 7.01 -2.39 -0.02 2.07 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.24 -0.02 8.06 -2.91 -0.02 -0.04 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 1.06 3.90 -16.54 -0.06 0.99 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.12 1.60 5.91 -2.39 -0.01 1.59 16 Total: -1.00 -81.44 346.82 1.68 -79.76 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.05 Total: 10.55 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 7.68 Total: 9.04 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -6.67 Total: -94.22 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.12 Total: -40.45 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -2.30 Total: -8.60 kcal Total: -81.44 1.68 -79.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703065107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.291 kcal (2) G-P(sol) polarization free energy of solvation -81.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds