Wall clock time and date at job start Sat Apr 11 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48505 * 109.46972 * 270.00021 * 3 2 1 5 5 H 1.48495 * 109.47015 * 29.99591 * 3 2 1 6 6 H 1.48496 * 109.47365 * 149.99733 * 3 2 1 7 7 C 1.38796 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99867 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00090 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00113 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99961 * 179.97438 * 11 10 9 14 14 C 1.47019 * 125.64840 * 359.69318 * 13 11 10 15 15 C 1.54329 * 107.26632 * 178.84700 * 14 13 11 16 16 C 1.55159 * 103.02245 * 338.14378 * 15 14 13 17 17 H 1.08997 * 111.00081 * 277.23050 * 16 15 14 18 18 N 1.46497 * 111.04111 * 153.39022 * 16 15 14 19 19 C 1.34775 * 119.99946 * 161.32541 * 18 16 15 20 20 O 1.21623 * 120.00345 * 0.02562 * 19 18 16 21 21 C 1.47255 * 120.00089 * 179.97438 * 19 18 16 22 22 N 1.30564 * 125.54082 * 359.70404 * 21 19 18 23 23 C 1.30703 * 115.90621 * 179.81908 * 22 21 19 24 24 C 1.34233 * 115.78142 * 0.46877 * 23 22 21 25 25 S 1.71072 * 109.09394 * 359.75186 * 24 23 22 26 26 C 1.47426 * 125.64612 * 179.97438 * 13 11 10 27 27 H 0.97005 * 120.00078 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47352 * 59.99711 * 10 9 7 29 29 H 1.08997 * 109.47275 * 300.00187 * 10 9 7 30 30 H 1.08995 * 109.88426 * 298.39753 * 14 13 11 31 31 H 1.09007 * 109.88165 * 59.55764 * 14 13 11 32 32 H 1.08997 * 110.85254 * 219.67372 * 15 14 13 33 33 H 1.09007 * 110.51542 * 96.45300 * 15 14 13 34 34 H 0.97001 * 119.99985 * 341.33977 * 18 16 15 35 35 H 1.07999 * 122.10776 * 180.22112 * 23 22 21 36 36 H 1.08001 * 125.45248 * 179.74890 * 24 23 22 37 37 H 1.09002 * 110.36613 * 322.93126 * 26 13 11 38 38 H 1.08998 * 110.36249 * 85.14655 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 4.3109 -6.2452 -0.0067 15 6 4.8664 -7.6847 0.0254 16 6 3.6852 -8.5022 0.6119 17 1 3.6718 -8.4436 1.7002 18 7 3.7369 -9.8962 0.1644 19 6 3.0522 -10.8446 0.8337 20 8 2.3910 -10.5432 1.8090 21 6 3.1037 -12.2458 0.3836 22 7 3.7705 -12.6873 -0.6484 23 6 3.6867 -13.9718 -0.8754 24 6 2.9174 -14.6664 -0.0224 25 16 2.2699 -13.5969 1.1452 26 6 2.4654 -7.7680 0.0018 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7313 0.8905 29 1 3.1243 -3.7314 -0.8894 30 1 4.6439 -5.7373 -0.9118 31 1 4.6504 -5.6990 0.8735 32 1 5.7397 -7.7492 0.6744 33 1 5.1074 -8.0237 -0.9821 34 1 4.2641 -10.1366 -0.6136 35 1 4.2007 -14.4438 -1.6997 36 1 2.7363 -15.7302 -0.0664 37 1 1.5806 -7.9249 0.6188 38 1 2.2833 -8.1128 -1.0160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703806538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:31 Heat of formation + Delta-G solvation = -13.450449 kcal Electronic energy + Delta-G solvation = -23437.328380 eV Core-core repulsion = 19726.363414 eV Total energy + Delta-G solvation = -3710.964966 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.77048 -39.95818 -39.13933 -37.28098 -34.56229 -32.41818 -31.65533 -30.61609 -29.69815 -28.07710 -26.60980 -25.46927 -23.69407 -22.60201 -21.39522 -20.44792 -19.41235 -18.97737 -17.77579 -17.43125 -16.96089 -16.56310 -15.87929 -15.70590 -15.37489 -15.05315 -14.79277 -14.44742 -14.27375 -14.10709 -13.91968 -13.74139 -13.60012 -13.02379 -12.66198 -12.54272 -12.06284 -12.01441 -11.92038 -11.73687 -11.18504 -11.05321 -11.00964 -10.91972 -10.75847 -10.39219 -10.23997 -9.82199 -9.68060 -9.46546 -9.35093 -9.05489 -8.52962 -8.21912 -6.48993 -6.20285 -3.91032 -0.29278 0.60637 1.17591 1.82597 2.52039 2.72741 2.98930 3.07304 3.23239 3.27113 3.31381 3.56756 3.66607 4.09332 4.21381 4.34178 4.51018 4.55796 4.63479 4.79056 4.93093 5.04835 5.07299 5.14783 5.39229 5.45766 5.48452 5.59958 5.63196 5.68043 5.80850 5.93393 5.98186 6.14427 6.38094 6.79997 7.05050 7.60365 7.62305 7.64326 8.36372 8.55211 9.24804 10.87136 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.036798 B = 0.001816 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.731007 B =15416.687987 C =15829.724950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.512 6.512 13 N -0.626 5.626 14 C 0.104 3.896 15 C -0.136 4.136 16 C 0.132 3.868 17 H 0.110 0.890 18 N -0.694 5.694 19 C 0.600 3.400 20 O -0.518 6.518 21 C -0.024 4.024 22 N -0.425 5.425 23 C 0.028 3.972 24 C -0.281 4.281 25 S 0.261 5.739 26 C 0.098 3.902 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.413 0.587 35 H 0.179 0.821 36 H 0.186 0.814 37 H 0.086 0.914 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.206 -30.195 -0.709 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.385 6.385 13 N -0.364 5.364 14 C -0.019 4.019 15 C -0.174 4.174 16 C 0.026 3.974 17 H 0.128 0.872 18 N -0.346 5.346 19 C 0.382 3.618 20 O -0.392 6.392 21 C -0.299 4.299 22 N -0.144 5.144 23 C -0.129 4.129 24 C -0.422 4.422 25 S 0.516 5.484 26 C -0.026 4.026 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.250 0.750 35 H 0.196 0.804 36 H 0.203 0.797 37 H 0.104 0.896 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.338 -29.769 0.587 31.519 hybrid contribution 2.797 0.484 -1.344 3.141 sum 13.135 -29.285 -0.757 32.105 Atomic orbital electron populations 1.70020 1.05953 1.27449 1.46818 1.24995 0.95029 0.99024 0.94552 0.86164 0.79407 0.81573 0.78325 1.20287 1.20751 1.19692 1.22856 0.94897 0.91597 1.58975 0.90907 1.85435 1.04916 0.96330 1.96712 1.23505 1.06500 0.94799 1.04867 1.20058 0.85666 0.85390 0.75109 1.90721 1.14925 1.85035 1.47857 1.48398 1.06472 1.05407 1.76148 1.21968 0.80589 0.96527 1.02856 1.22932 0.97656 0.94247 1.02558 1.22215 0.95386 0.78981 1.00773 0.87177 1.45559 1.49884 1.06687 1.32502 1.16723 0.79842 0.82303 0.82931 1.90924 1.40876 1.81285 1.26119 1.27652 1.04030 0.99678 0.98504 1.66801 1.18446 1.14513 1.14590 1.21729 1.01208 0.87922 1.02069 1.26996 1.05785 1.07210 1.02192 1.84218 1.41770 0.96714 1.25736 1.22472 0.98087 0.80838 1.01250 0.92180 0.89177 0.89232 0.90638 0.90688 0.88924 0.89679 0.75018 0.80377 0.79714 0.89580 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.02 5.35 36.01 0.19 -2.82 16 11 C 0.55 10.85 7.87 -10.98 -0.09 10.76 16 12 O -0.51 -12.28 16.12 5.56 0.09 -12.19 16 13 N -0.63 -9.13 3.33 -170.53 -0.57 -9.70 16 14 C 0.10 1.04 6.49 -3.06 -0.02 1.02 16 15 C -0.14 -0.93 6.57 -24.89 -0.16 -1.09 16 16 C 0.13 1.24 3.32 -65.79 -0.22 1.03 16 17 H 0.11 1.15 7.73 -51.93 -0.40 0.75 16 18 N -0.69 -5.95 5.23 -52.87 -0.28 -6.23 16 19 C 0.60 6.40 7.81 -12.60 -0.10 6.30 16 20 O -0.52 -7.14 16.69 5.26 0.09 -7.05 16 21 C -0.02 -0.22 7.46 -14.43 -0.11 -0.33 16 22 N -0.43 -3.47 10.24 -11.50 -0.12 -3.58 16 23 C 0.03 0.16 11.24 -19.44 -0.22 -0.05 16 24 C -0.28 -1.35 11.09 29.32 0.33 -1.02 16 25 S 0.26 1.78 23.03 -107.50 -2.48 -0.69 16 26 C 0.10 1.27 6.60 -2.54 -0.02 1.25 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 29 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.46 8.00 -51.92 -0.42 0.05 16 34 H 0.41 2.75 8.17 -40.82 -0.33 2.42 16 35 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.19 0.34 8.06 -52.49 -0.42 -0.09 16 37 H 0.09 1.33 8.04 -51.93 -0.42 0.92 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -37.18 361.10 -9.03 -46.21 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.49 Total: -1.20 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.21 Total: 2.02 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.23 Total: -45.09 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.18 Total: -19.24 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -4.69 Total: -4.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.18 -9.03 -46.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703806538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.756 kcal (2) G-P(sol) polarization free energy of solvation -37.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds