Wall clock time and date at job start Sat Apr 11 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48494 * 109.47250 * 239.99797 * 3 2 1 5 5 H 1.48498 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46644 * 120.00043 * 3 2 1 7 7 C 1.38800 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00204 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00173 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47467 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99546 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00170 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00185 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47317 * 179.97438 * 14 13 11 16 16 C 1.53502 * 114.20611 * 185.00208 * 15 14 13 17 17 N 1.47068 * 87.98366 * 220.34410 * 16 15 14 18 18 C 1.34778 * 136.05688 * 207.08525 * 17 16 15 19 19 O 1.21625 * 119.99705 * 359.97438 * 18 17 16 20 20 C 1.47269 * 119.99897 * 179.97438 * 18 17 16 21 21 C 1.35203 * 123.14072 * 179.72726 * 20 18 17 22 22 S 1.70941 * 108.82975 * 180.27164 * 21 20 18 23 23 C 1.70775 * 91.12839 * 359.97438 * 22 21 20 24 24 N 1.28648 * 110.55905 * 0.02562 * 23 22 21 25 25 C 1.47072 * 87.88458 * 27.34088 * 17 16 15 26 26 H 0.97003 * 119.99799 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47020 * 59.99124 * 10 9 7 28 28 H 1.09001 * 109.46716 * 299.99939 * 10 9 7 29 29 H 0.97002 * 120.00054 * 359.97438 * 13 11 10 30 30 H 1.08997 * 109.46888 * 59.99707 * 14 13 11 31 31 H 1.09000 * 109.47176 * 300.00216 * 14 13 11 32 32 H 1.09002 * 113.28229 * 318.06534 * 15 14 13 33 33 H 1.09002 * 113.46545 * 105.56229 * 16 15 14 34 34 H 1.09000 * 113.46507 * 335.12267 * 16 15 14 35 35 H 1.07999 * 125.58775 * 0.27316 * 21 20 18 36 36 H 1.07996 * 124.72224 * 179.97438 * 23 22 21 37 37 H 1.08996 * 113.46696 * 87.43887 * 25 17 16 38 38 H 1.08996 * 113.46637 * 217.87910 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9872 -5.3028 -0.0018 12 8 0.7909 -5.5023 -0.0019 13 7 2.8439 -6.3431 -0.0009 14 6 2.3302 -7.7151 -0.0007 15 6 3.5022 -8.6986 -0.0004 16 6 3.0878 -10.1716 -0.1223 17 7 4.1251 -10.4916 0.8700 18 6 4.8885 -11.5625 1.1649 19 8 4.7811 -12.5838 0.5133 20 6 5.8527 -11.4958 2.2761 21 6 6.6454 -12.5323 2.6301 22 16 7.6092 -12.0604 3.9607 23 6 6.8993 -10.5072 3.9673 24 7 6.0220 -10.4075 3.0316 25 6 3.9581 -9.1310 1.4029 26 1 -0.4850 0.8401 0.0004 27 1 3.1237 -3.7317 0.8891 28 1 3.1250 -3.7310 -0.8908 29 1 3.8007 -6.1836 -0.0004 30 1 1.7220 -7.8755 -0.8910 31 1 1.7210 -7.8749 0.8889 32 1 4.3111 -8.4051 -0.6695 33 1 3.2826 -10.5973 -1.1066 34 1 2.0751 -10.3681 0.2297 35 1 6.6663 -13.4998 2.1508 36 1 7.1511 -9.7186 4.6609 37 1 3.1748 -9.0533 2.1568 38 1 4.8943 -8.6703 1.7178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704561793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:35 Heat of formation + Delta-G solvation = 17.658685 kcal Electronic energy + Delta-G solvation = -23087.815875 eV Core-core repulsion = 19378.199902 eV Total energy + Delta-G solvation = -3709.615973 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19543 -39.99958 -38.99428 -38.00802 -34.51201 -32.42894 -31.42430 -30.92431 -29.26516 -26.96092 -26.25334 -25.54374 -25.18181 -22.70308 -20.99232 -20.24722 -19.73759 -18.74810 -17.85791 -16.95285 -16.70519 -16.66674 -16.21245 -15.70088 -15.59114 -15.16756 -14.82449 -14.79083 -14.18645 -14.03247 -13.89404 -13.65045 -13.33815 -13.07255 -12.93387 -12.63864 -12.45850 -12.43362 -11.80727 -11.68062 -11.04835 -11.04303 -10.99473 -10.77117 -10.54282 -10.28523 -10.26549 -9.82752 -9.61616 -9.42977 -9.07596 -9.06527 -8.91136 -8.24203 -6.50168 -6.21662 -3.92331 -0.00401 0.70801 1.05846 1.49005 2.42766 2.91786 3.01620 3.08721 3.23283 3.27099 3.30051 3.53292 3.63170 3.98156 4.20406 4.25448 4.49762 4.58077 4.67088 4.74412 4.85497 5.02495 5.13349 5.14387 5.16948 5.23625 5.30349 5.50250 5.59022 5.60368 5.71090 5.88834 5.91777 6.13794 6.57351 6.85260 7.25185 7.59091 7.67813 7.71239 8.34866 8.59571 9.23488 10.85652 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.001775 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.169860 B =15767.906897 C =16953.253147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.738 5.738 14 C 0.135 3.865 15 C -0.140 4.140 16 C 0.116 3.884 17 N -0.631 5.631 18 C 0.622 3.378 19 O -0.536 6.536 20 C 0.010 3.990 21 C -0.224 4.224 22 S 0.215 5.785 23 C -0.001 4.001 24 N -0.437 5.437 25 C 0.116 3.884 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.399 0.601 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.190 0.810 36 H 0.207 0.793 37 H 0.090 0.910 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.315 -25.108 7.511 31.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.393 5.393 14 C 0.010 3.990 15 C -0.160 4.160 16 C -0.007 4.007 17 N -0.365 5.365 18 C 0.410 3.590 19 O -0.413 6.413 20 C -0.125 4.125 21 C -0.366 4.366 22 S 0.469 5.531 23 C -0.300 4.300 24 N -0.151 5.151 25 C -0.007 4.007 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.233 0.767 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.207 0.793 36 H 0.224 0.776 37 H 0.108 0.892 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.655 -26.026 7.753 31.345 hybrid contribution 1.849 1.338 -0.586 2.356 sum 17.504 -24.688 7.166 31.100 Atomic orbital electron populations 1.70011 1.05940 1.27561 1.46761 1.24995 0.95035 0.99025 0.94550 0.86223 0.79232 0.81252 0.78787 1.19946 1.20828 1.19950 1.22826 0.94870 0.91673 1.59059 0.90972 1.85401 1.04934 0.96315 1.96725 1.23530 1.06573 0.95374 1.04949 1.20303 0.86500 0.86278 0.75100 1.90710 1.15376 1.85609 1.47450 1.45965 1.10007 1.05258 1.78081 1.21126 0.94507 0.80329 1.03061 1.23333 0.99607 0.94454 0.98570 1.22998 0.92167 0.91868 0.93637 1.49239 1.38026 1.13792 1.35428 1.16493 0.79444 0.81315 0.81794 1.90836 1.69375 1.29555 1.51572 1.20362 1.02010 0.89871 1.00262 1.26660 1.01314 1.05632 1.02998 1.83034 1.36577 1.08665 1.24796 1.28564 0.98161 1.01822 1.01493 1.67042 1.16625 1.26746 1.04727 1.23254 1.02565 0.79162 0.95715 0.92130 0.89188 0.89212 0.76715 0.90758 0.90943 0.86936 0.89696 0.88863 0.79288 0.77618 0.89194 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 11 C 0.53 9.42 7.85 -10.99 -0.09 9.34 16 12 O -0.52 -11.35 15.86 5.56 0.09 -11.26 16 13 N -0.74 -8.81 5.56 -60.30 -0.33 -9.14 16 14 C 0.13 1.33 5.59 -4.04 -0.02 1.30 16 15 C -0.14 -1.03 4.12 -89.97 -0.37 -1.40 16 16 C 0.12 0.94 8.19 -8.50 -0.07 0.87 16 17 N -0.63 -6.29 3.69 -186.37 -0.69 -6.98 16 18 C 0.62 7.39 8.05 -12.59 -0.10 7.29 16 19 O -0.54 -7.82 17.49 5.26 0.09 -7.73 16 20 C 0.01 0.10 6.69 -84.52 -0.57 -0.47 16 21 C -0.22 -1.65 10.62 29.65 0.31 -1.33 16 22 S 0.21 0.90 22.97 -107.50 -2.47 -1.57 16 23 C 0.00 0.00 12.17 51.43 0.63 0.62 16 24 N -0.44 -3.74 8.74 -12.36 -0.11 -3.85 16 25 C 0.12 0.93 7.22 -8.36 -0.06 0.87 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 28 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 29 H 0.40 3.61 8.47 -40.82 -0.35 3.26 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.76 7.80 -51.93 -0.41 0.35 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.19 1.24 8.03 -52.49 -0.42 0.81 16 36 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 38 H 0.09 0.75 7.28 -51.93 -0.38 0.37 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -37.84 363.05 -8.83 -46.67 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.46 Total: -0.20 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 0.08 Total: 1.50 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.40 Total: -45.23 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.18 Total: -18.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -4.68 Total: -5.40 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.84 -8.83 -46.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704561793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.329 kcal (2) G-P(sol) polarization free energy of solvation -37.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds