Wall clock time and date at job start Sat Apr 11 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48494 * 109.47250 * 239.99797 * 3 2 1 5 5 H 1.48498 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46644 * 120.00043 * 3 2 1 7 7 C 1.38800 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00204 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00173 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47467 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99546 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00170 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00185 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47317 * 179.97438 * 14 13 11 16 16 C 1.53502 * 114.20611 * 185.00208 * 15 14 13 17 17 N 1.47068 * 87.98366 * 220.34410 * 16 15 14 18 18 C 1.34778 * 136.05688 * 207.08525 * 17 16 15 19 19 O 1.21625 * 119.99705 * 359.97438 * 18 17 16 20 20 C 1.47269 * 119.99897 * 179.97438 * 18 17 16 21 21 C 1.35203 * 123.14072 * 179.72726 * 20 18 17 22 22 S 1.70941 * 108.82975 * 180.27164 * 21 20 18 23 23 C 1.70775 * 91.12839 * 359.97438 * 22 21 20 24 24 N 1.28648 * 110.55905 * 0.02562 * 23 22 21 25 25 C 1.47072 * 87.88458 * 27.34088 * 17 16 15 26 26 H 0.97003 * 119.99799 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47020 * 59.99124 * 10 9 7 28 28 H 1.09001 * 109.46716 * 299.99939 * 10 9 7 29 29 H 0.97002 * 120.00054 * 359.97438 * 13 11 10 30 30 H 1.08997 * 109.46888 * 59.99707 * 14 13 11 31 31 H 1.09000 * 109.47176 * 300.00216 * 14 13 11 32 32 H 1.09002 * 113.28229 * 318.06534 * 15 14 13 33 33 H 1.09002 * 113.46545 * 105.56229 * 16 15 14 34 34 H 1.09000 * 113.46507 * 335.12267 * 16 15 14 35 35 H 1.07999 * 125.58775 * 0.27316 * 21 20 18 36 36 H 1.07996 * 124.72224 * 179.97438 * 23 22 21 37 37 H 1.08996 * 113.46696 * 87.43887 * 25 17 16 38 38 H 1.08996 * 113.46637 * 217.87910 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9872 -5.3028 -0.0018 12 8 0.7909 -5.5023 -0.0019 13 7 2.8439 -6.3431 -0.0009 14 6 2.3302 -7.7151 -0.0007 15 6 3.5022 -8.6986 -0.0004 16 6 3.0878 -10.1716 -0.1223 17 7 4.1251 -10.4916 0.8700 18 6 4.8885 -11.5625 1.1649 19 8 4.7811 -12.5838 0.5133 20 6 5.8527 -11.4958 2.2761 21 6 6.6454 -12.5323 2.6301 22 16 7.6092 -12.0604 3.9607 23 6 6.8993 -10.5072 3.9673 24 7 6.0220 -10.4075 3.0316 25 6 3.9581 -9.1310 1.4029 26 1 -0.4850 0.8401 0.0004 27 1 3.1237 -3.7317 0.8891 28 1 3.1250 -3.7310 -0.8908 29 1 3.8007 -6.1836 -0.0004 30 1 1.7220 -7.8755 -0.8910 31 1 1.7210 -7.8749 0.8889 32 1 4.3111 -8.4051 -0.6695 33 1 3.2826 -10.5973 -1.1066 34 1 2.0751 -10.3681 0.2297 35 1 6.6663 -13.4998 2.1508 36 1 7.1511 -9.7186 4.6609 37 1 3.1748 -9.0533 2.1568 38 1 4.8943 -8.6703 1.7178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704561793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:34 Heat of formation + Delta-G solvation = -11.262459 kcal Electronic energy + Delta-G solvation = -23089.069990 eV Core-core repulsion = 19378.199902 eV Total energy + Delta-G solvation = -3710.870088 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89832 -40.76562 -40.16308 -38.87372 -35.69072 -34.55445 -32.31973 -31.64463 -30.50744 -27.85255 -27.51306 -26.96191 -25.91359 -23.37854 -21.91708 -21.36719 -20.30766 -19.77095 -19.37393 -17.80830 -17.65578 -17.57478 -17.24861 -16.85229 -16.61024 -16.58012 -15.97459 -15.92007 -15.47430 -15.03686 -14.68719 -14.58386 -14.35125 -14.24771 -14.13515 -13.60504 -13.55076 -13.13901 -13.08836 -12.91409 -12.83558 -12.61318 -12.44153 -11.76263 -11.68266 -11.32859 -11.10284 -10.90337 -10.79382 -10.75421 -10.23756 -10.13911 -10.05372 -9.77324 -8.63007 -8.31862 -6.09432 -0.50757 0.29862 0.61711 0.88091 1.29881 1.45775 1.49354 1.58791 1.67548 1.74033 2.19927 2.28652 2.33736 2.99992 3.02113 3.19526 3.37567 3.69289 3.81073 3.93376 4.07601 4.09365 4.19012 4.26857 4.35988 4.42651 4.54098 4.57342 4.59447 4.70024 4.76884 4.81819 5.00173 5.18798 5.44462 5.48331 6.22371 6.36016 6.48310 6.56456 6.92713 7.09444 7.30449 8.76915 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.001775 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.169860 B =15767.906897 C =16953.253147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.137 3.863 15 C -0.116 4.116 16 C 0.110 3.890 17 N -0.636 5.636 18 C 0.612 3.388 19 O -0.579 6.579 20 C -0.019 4.019 21 C -0.241 4.241 22 S 0.295 5.705 23 C -0.007 4.007 24 N -0.464 5.464 25 C 0.120 3.880 26 H 0.270 0.730 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.418 0.582 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.189 0.811 36 H 0.238 0.762 37 H 0.093 0.907 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.459 -24.940 8.586 33.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.012 3.988 15 C -0.136 4.136 16 C -0.012 4.012 17 N -0.368 5.368 18 C 0.401 3.599 19 O -0.460 6.460 20 C -0.154 4.154 21 C -0.384 4.384 22 S 0.551 5.449 23 C -0.305 4.305 24 N -0.179 5.179 25 C -0.002 4.002 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.255 0.745 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.206 0.794 36 H 0.254 0.746 37 H 0.111 0.889 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 18.862 -25.870 8.845 33.215 hybrid contribution 0.984 1.121 -0.844 1.714 sum 19.846 -24.749 8.001 32.716 Atomic orbital electron populations 1.70183 1.07954 1.28601 1.48041 1.26129 0.95966 1.03329 0.93840 0.85014 0.77793 0.75757 0.79500 1.18694 1.20567 1.18601 1.23179 0.95367 0.92035 1.58768 0.89837 1.85585 1.10743 0.99269 1.97053 1.23378 1.03447 0.94413 1.06892 1.20008 0.86191 0.86639 0.75117 1.90703 1.17471 1.86104 1.50210 1.45677 1.10363 1.04874 1.75521 1.21208 0.95422 0.79243 1.02891 1.23132 0.98760 0.93154 0.98516 1.23138 0.92388 0.92126 0.93583 1.49368 1.37784 1.14008 1.35652 1.16942 0.79848 0.81060 0.82086 1.90789 1.70876 1.31032 1.53266 1.20228 1.03003 0.91317 1.00879 1.26912 1.01692 1.05396 1.04377 1.82756 1.33843 1.06618 1.21643 1.29145 0.97118 1.03445 1.00836 1.67019 1.18275 1.26753 1.05807 1.23306 1.02849 0.78159 0.95932 0.92062 0.87059 0.87195 0.74522 0.91040 0.91197 0.85510 0.89619 0.88026 0.79355 0.74574 0.88938 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.62 13.22 21.65 0.29 -55.34 16 2 C 0.01 0.68 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.55 -30.67 9.50 67.95 0.65 -30.02 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 11 C 0.53 18.35 7.85 87.66 0.69 19.04 16 12 O -0.57 -25.08 15.86 -3.04 -0.05 -25.13 16 13 N -0.71 -15.32 5.56 -463.07 -2.57 -17.89 16 14 C 0.14 2.46 5.59 86.38 0.48 2.94 16 15 C -0.12 -1.49 4.12 -10.37 -0.04 -1.53 16 16 C 0.11 1.69 8.19 83.18 0.68 2.37 16 17 N -0.64 -12.40 3.69 -861.78 -3.18 -15.58 16 18 C 0.61 14.82 8.05 86.62 0.70 15.52 16 19 O -0.58 -17.63 17.49 -4.11 -0.07 -17.70 16 20 C -0.02 -0.36 6.69 40.56 0.27 -0.09 16 21 C -0.24 -3.38 10.62 67.12 0.71 -2.67 16 22 S 0.30 1.72 22.97 -56.49 -1.30 0.43 16 23 C -0.01 -0.05 12.17 130.71 1.59 1.54 16 24 N -0.46 -7.30 8.74 -193.02 -1.69 -8.99 16 25 C 0.12 1.75 7.22 83.27 0.60 2.35 16 26 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.11 3.71 8.14 -2.39 -0.02 3.70 16 28 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 29 H 0.42 6.12 8.47 -92.71 -0.79 5.34 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.37 7.80 -2.39 -0.02 1.36 16 32 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.19 2.50 8.03 -2.91 -0.02 2.48 16 36 H 0.24 0.15 8.06 -2.91 -0.02 0.12 16 37 H 0.09 1.33 7.87 -2.39 -0.02 1.31 16 38 H 0.10 1.38 7.28 -2.39 -0.02 1.36 16 Total: -1.00 -85.86 363.05 -0.15 -86.01 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.32 Total: 12.53 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 7.23 Total: 6.13 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -7.15 Total: -97.79 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.12 Total: -42.83 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -2.46 Total: -9.11 kcal Total: -85.86 -0.15 -86.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704561793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.748 kcal (2) G-P(sol) polarization free energy of solvation -85.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds