Wall clock time and date at job start Sat Apr 11 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48499 * 109.47244 * 240.00472 * 3 2 1 5 5 H 1.48506 * 109.46780 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47133 * 119.99906 * 3 2 1 7 7 C 1.38805 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99980 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47123 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99719 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99953 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99797 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47305 * 180.02562 * 14 13 11 16 16 C 1.31000 * 119.99867 * 124.99652 * 15 14 13 17 17 C 1.50697 * 119.99503 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47042 * 125.00575 * 17 16 15 19 19 C 1.34775 * 120.00160 * 180.02562 * 18 17 16 20 20 O 1.21617 * 120.00170 * 359.97438 * 19 18 17 21 21 C 1.47259 * 119.99762 * 179.97438 * 19 18 17 22 22 N 1.30554 * 125.54425 * 359.96946 * 21 19 18 23 23 C 1.30704 * 115.90746 * 180.02562 * 22 21 19 24 24 C 1.34234 * 115.78432 * 0.02562 * 23 22 21 25 25 S 1.71078 * 109.08992 * 359.97438 * 24 23 22 26 26 H 0.96997 * 120.00329 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47149 * 60.00251 * 10 9 7 28 28 H 1.09000 * 109.47189 * 300.00103 * 10 9 7 29 29 H 0.96998 * 120.00321 * 0.02562 * 13 11 10 30 30 H 1.09002 * 109.47122 * 60.00505 * 14 13 11 31 31 H 1.09000 * 109.47178 * 300.00104 * 14 13 11 32 32 H 1.08000 * 119.99622 * 305.00313 * 15 14 13 33 33 H 1.07997 * 119.99808 * 0.02562 * 16 15 14 34 34 H 1.08998 * 109.47665 * 5.00815 * 17 16 15 35 35 H 1.09001 * 109.47278 * 244.99858 * 17 16 15 36 36 H 0.97002 * 119.99555 * 359.97438 * 18 17 16 37 37 H 1.07996 * 122.11325 * 179.97438 * 23 22 21 38 38 H 1.08002 * 125.46087 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3432 -0.0018 14 6 2.3303 -7.7151 -0.0019 15 6 3.4847 -8.6839 -0.0020 16 6 3.5682 -9.6034 0.9273 17 6 4.7229 -10.5717 0.9275 18 7 5.4003 -10.5237 2.2256 19 6 6.4700 -11.3102 2.4570 20 8 6.8727 -12.0602 1.5884 21 6 7.1512 -11.2615 3.7617 22 7 6.8128 -10.4999 4.7666 23 6 7.5512 -10.6085 5.8395 24 6 8.5614 -11.4894 5.7664 25 16 8.5555 -12.2204 4.2196 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8905 29 1 3.8008 -6.1836 -0.0015 30 1 1.7213 -7.8750 -0.8916 31 1 1.7221 -7.8754 0.8884 32 1 4.2432 -8.6200 -0.7682 33 1 2.8096 -9.6674 1.6933 34 1 5.4261 -10.2990 0.1405 35 1 4.3511 -11.5807 0.7489 36 1 5.0794 -9.9253 2.9182 37 1 7.3612 -10.0258 6.7287 38 1 9.2653 -11.7027 6.5572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704975419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:38 Heat of formation + Delta-G solvation = -8.786291 kcal Electronic energy + Delta-G solvation = -22145.001782 eV Core-core repulsion = 18434.239069 eV Total energy + Delta-G solvation = -3710.762713 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66907 -39.52897 -39.19632 -36.72774 -34.97362 -33.00291 -32.42994 -31.24918 -29.74042 -27.93570 -26.51504 -25.48160 -24.00685 -22.38301 -20.85464 -20.48301 -19.89769 -19.03482 -17.87406 -17.53005 -16.63097 -16.27496 -16.15634 -15.98553 -15.65681 -15.30040 -14.80663 -14.78177 -14.46946 -14.02038 -13.97009 -13.93435 -13.75326 -13.12598 -12.82408 -12.74412 -12.50394 -12.09635 -11.80517 -11.57052 -11.05647 -11.04831 -11.03976 -10.77551 -10.47405 -10.28688 -10.04122 -9.82793 -9.65649 -9.44850 -9.32911 -9.06586 -8.90024 -8.24674 -6.50513 -6.21721 -3.92500 -0.33694 0.55039 1.12321 1.48551 1.78728 2.67751 2.77616 3.06942 3.08343 3.23453 3.27838 3.33039 3.60027 3.76509 4.20233 4.21889 4.46297 4.53131 4.59354 4.76425 4.93056 5.05822 5.13305 5.17547 5.22778 5.41135 5.44921 5.55250 5.74913 5.78055 5.88180 6.13117 6.13685 6.22925 6.57643 6.75695 7.01139 7.55112 7.59057 7.67326 8.34818 8.57988 9.23414 10.85646 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.001568 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.699846 B =17858.435345 C =19212.062998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.147 3.853 15 C -0.137 4.137 16 C -0.167 4.167 17 C 0.150 3.850 18 N -0.700 5.700 19 C 0.599 3.401 20 O -0.528 6.528 21 C -0.025 4.025 22 N -0.423 5.423 23 C 0.029 3.971 24 C -0.278 4.278 25 S 0.254 5.746 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.399 0.601 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.415 0.585 37 H 0.181 0.819 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.353 -26.809 9.209 33.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.391 5.391 14 C 0.023 3.977 15 C -0.156 4.156 16 C -0.186 4.186 17 C 0.027 3.973 18 N -0.352 5.352 19 C 0.381 3.619 20 O -0.404 6.404 21 C -0.300 4.300 22 N -0.141 5.141 23 C -0.128 4.128 24 C -0.419 4.419 25 S 0.508 5.492 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.233 0.767 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.251 0.749 37 H 0.197 0.803 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 16.593 -27.992 7.960 33.500 hybrid contribution 2.170 2.192 1.365 3.373 sum 18.763 -25.800 9.325 33.237 Atomic orbital electron populations 1.70004 1.05946 1.27578 1.46744 1.24992 0.95031 0.99018 0.94521 0.86223 0.79236 0.81235 0.78798 1.19936 1.20807 1.19947 1.22830 0.94884 0.91664 1.59104 0.90963 1.85394 1.04896 0.96308 1.96730 1.23532 1.06607 0.95274 1.04983 1.20336 0.86499 0.86278 0.75089 1.90707 1.15367 1.85567 1.47490 1.45971 1.10083 1.05022 1.78063 1.20303 0.94118 0.80262 1.03013 1.23082 0.98809 0.95136 0.98612 1.22890 0.98635 0.97036 1.00072 1.20462 0.92480 0.99680 0.84664 1.45733 1.29843 1.42347 1.17293 1.16691 0.80290 0.80754 0.84126 1.90881 1.65391 1.39595 1.44514 1.27658 1.01475 1.01914 0.98919 1.66806 1.27779 1.20114 0.99429 1.21768 0.92868 1.00288 0.97860 1.26996 1.06083 1.04498 1.04360 1.84127 1.24844 1.36323 1.03890 0.92119 0.89176 0.89168 0.76675 0.90403 0.90975 0.86178 0.85917 0.90319 0.89878 0.74912 0.80253 0.79662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.73 7.85 -10.98 -0.09 9.64 16 12 O -0.52 -11.60 15.86 5.56 0.09 -11.51 16 13 N -0.74 -9.35 5.55 -61.47 -0.34 -9.69 16 14 C 0.15 1.56 6.11 -5.19 -0.03 1.53 16 15 C -0.14 -1.00 9.24 -36.02 -0.33 -1.33 16 16 C -0.17 -1.08 9.24 -36.03 -0.33 -1.42 16 17 C 0.15 1.02 6.11 -5.19 -0.03 0.99 16 18 N -0.70 -5.38 5.54 -62.62 -0.35 -5.73 16 19 C 0.60 5.73 7.81 -12.60 -0.10 5.63 16 20 O -0.53 -6.33 16.94 5.26 0.09 -6.24 16 21 C -0.03 -0.21 7.46 -14.43 -0.11 -0.32 16 22 N -0.42 -3.48 10.24 -11.51 -0.12 -3.60 16 23 C 0.03 0.18 11.24 -19.44 -0.22 -0.04 16 24 C -0.28 -1.27 11.09 29.32 0.33 -0.95 16 25 S 0.25 1.55 23.03 -107.50 -2.48 -0.93 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 28 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.40 3.94 8.46 -40.82 -0.35 3.59 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 32 H 0.12 0.75 7.84 -52.49 -0.41 0.33 16 33 H 0.12 0.76 7.84 -52.49 -0.41 0.34 16 34 H 0.08 0.55 7.79 -51.93 -0.40 0.14 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.41 2.84 8.12 -40.82 -0.33 2.51 16 37 H 0.18 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.19 0.30 8.06 -52.49 -0.42 -0.12 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -36.59 371.77 -8.89 -45.47 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.39 Total: 1.56 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.49 Total: -2.06 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.07 Total: -44.39 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.18 Total: -17.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -4.69 Total: -4.76 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.59 -8.89 -45.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704975419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.688 kcal (2) G-P(sol) polarization free energy of solvation -36.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds