Wall clock time and date at job start Sat Apr 11 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48499 * 109.47244 * 240.00472 * 3 2 1 5 5 H 1.48506 * 109.46780 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47133 * 119.99906 * 3 2 1 7 7 C 1.38805 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99980 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47123 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99719 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99953 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99797 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47305 * 180.02562 * 14 13 11 16 16 C 1.31000 * 119.99867 * 124.99652 * 15 14 13 17 17 C 1.50697 * 119.99503 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47042 * 125.00575 * 17 16 15 19 19 C 1.34775 * 120.00160 * 180.02562 * 18 17 16 20 20 O 1.21617 * 120.00170 * 359.97438 * 19 18 17 21 21 C 1.47259 * 119.99762 * 179.97438 * 19 18 17 22 22 N 1.30554 * 125.54425 * 359.96946 * 21 19 18 23 23 C 1.30704 * 115.90746 * 180.02562 * 22 21 19 24 24 C 1.34234 * 115.78432 * 0.02562 * 23 22 21 25 25 S 1.71078 * 109.08992 * 359.97438 * 24 23 22 26 26 H 0.96997 * 120.00329 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47149 * 60.00251 * 10 9 7 28 28 H 1.09000 * 109.47189 * 300.00103 * 10 9 7 29 29 H 0.96998 * 120.00321 * 0.02562 * 13 11 10 30 30 H 1.09002 * 109.47122 * 60.00505 * 14 13 11 31 31 H 1.09000 * 109.47178 * 300.00104 * 14 13 11 32 32 H 1.08000 * 119.99622 * 305.00313 * 15 14 13 33 33 H 1.07997 * 119.99808 * 0.02562 * 16 15 14 34 34 H 1.08998 * 109.47665 * 5.00815 * 17 16 15 35 35 H 1.09001 * 109.47278 * 244.99858 * 17 16 15 36 36 H 0.97002 * 119.99555 * 359.97438 * 18 17 16 37 37 H 1.07996 * 122.11325 * 179.97438 * 23 22 21 38 38 H 1.08002 * 125.46087 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3432 -0.0018 14 6 2.3303 -7.7151 -0.0019 15 6 3.4847 -8.6839 -0.0020 16 6 3.5682 -9.6034 0.9273 17 6 4.7229 -10.5717 0.9275 18 7 5.4003 -10.5237 2.2256 19 6 6.4700 -11.3102 2.4570 20 8 6.8727 -12.0602 1.5884 21 6 7.1512 -11.2615 3.7617 22 7 6.8128 -10.4999 4.7666 23 6 7.5512 -10.6085 5.8395 24 6 8.5614 -11.4894 5.7664 25 16 8.5555 -12.2204 4.2196 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8905 29 1 3.8008 -6.1836 -0.0015 30 1 1.7213 -7.8750 -0.8916 31 1 1.7221 -7.8754 0.8884 32 1 4.2432 -8.6200 -0.7682 33 1 2.8096 -9.6674 1.6933 34 1 5.4261 -10.2990 0.1405 35 1 4.3511 -11.5807 0.7489 36 1 5.0794 -9.9253 2.9182 37 1 7.3612 -10.0258 6.7287 38 1 9.2653 -11.7027 6.5572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704975419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:37 Heat of formation + Delta-G solvation = -37.144034 kcal Electronic energy + Delta-G solvation = -22146.231466 eV Core-core repulsion = 18434.239069 eV Total energy + Delta-G solvation = -3711.992397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.24696 -40.60811 -40.08774 -37.51694 -35.93574 -34.57759 -33.92064 -31.84137 -31.02045 -28.77990 -27.67298 -27.11032 -24.78624 -22.94829 -21.87342 -21.34438 -20.60520 -19.79711 -19.54270 -18.09204 -17.84920 -17.41705 -16.99136 -16.87005 -16.74598 -16.60803 -16.16339 -15.79533 -15.41650 -15.20328 -14.82788 -14.73934 -14.46747 -14.36893 -14.30499 -13.79433 -13.37805 -13.18426 -13.16228 -12.85689 -12.62619 -12.51198 -12.22398 -11.75813 -11.73461 -11.12286 -11.10610 -11.00321 -10.75598 -10.57260 -10.27816 -10.25981 -10.01752 -9.89327 -8.65937 -8.33747 -6.11902 -0.83467 0.07509 0.69239 0.84096 1.25746 1.30083 1.44523 1.48841 1.59143 1.61471 2.08568 2.19244 2.28069 2.43756 3.00241 3.08002 3.33780 3.54358 3.96183 3.99702 4.02318 4.28209 4.28710 4.33112 4.37572 4.52236 4.53297 4.53685 4.66702 4.83015 5.05246 5.15292 5.36072 5.42430 5.55203 5.67193 6.18019 6.20377 6.48808 6.50893 6.91571 7.07388 7.24229 8.75168 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.001568 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.699846 B =17858.435345 C =19212.062998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.710 5.710 14 C 0.146 3.854 15 C -0.136 4.136 16 C -0.148 4.148 17 C 0.151 3.849 18 N -0.694 5.694 19 C 0.597 3.403 20 O -0.561 6.561 21 C -0.062 4.062 22 N -0.436 5.436 23 C 0.008 3.992 24 C -0.255 4.255 25 S 0.266 5.734 26 H 0.271 0.729 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.417 0.583 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.419 0.581 37 H 0.202 0.798 38 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.248 -27.172 10.223 35.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.023 3.977 15 C -0.156 4.156 16 C -0.168 4.168 17 C 0.028 3.972 18 N -0.345 5.345 19 C 0.380 3.620 20 O -0.440 6.440 21 C -0.334 4.334 22 N -0.155 5.155 23 C -0.148 4.148 24 C -0.396 4.396 25 S 0.519 5.481 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.254 0.746 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.256 0.744 37 H 0.218 0.782 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 19.525 -28.377 8.976 35.596 hybrid contribution 1.363 2.127 1.143 2.773 sum 20.889 -26.250 10.119 35.040 Atomic orbital electron populations 1.70174 1.07959 1.28667 1.47923 1.26129 0.95969 1.03314 0.93742 0.85008 0.77806 0.75718 0.79494 1.18670 1.20425 1.18655 1.23181 0.95368 0.92025 1.58975 0.89878 1.85570 1.10602 0.99238 1.97062 1.23378 1.03545 0.94329 1.06866 1.20069 0.86212 0.86694 0.75116 1.90696 1.17436 1.86094 1.50238 1.45719 1.10392 1.04793 1.75488 1.20388 0.95404 0.79416 1.02484 1.22870 0.98209 0.94762 0.99733 1.22871 0.98210 0.96145 0.99534 1.20476 0.92473 0.99807 0.84433 1.45729 1.29348 1.41855 1.17598 1.16891 0.80383 0.80374 0.84355 1.90849 1.66461 1.41047 1.45655 1.27504 1.03175 1.03867 0.98893 1.66788 1.28514 1.20241 0.99924 1.22179 0.93278 1.01291 0.98060 1.27416 1.05488 1.02530 1.04121 1.84099 1.23552 1.35731 1.04709 0.91998 0.87176 0.87134 0.74583 0.91130 0.91564 0.84487 0.85427 0.90099 0.89699 0.74432 0.78169 0.76369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.91 13.22 21.65 0.29 -55.63 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.41 29.55 68.60 2.03 45.43 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.55 -31.17 9.50 67.96 0.65 -30.53 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 10 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 11 C 0.53 19.18 7.85 87.66 0.69 19.87 16 12 O -0.57 -25.88 15.86 -3.03 -0.05 -25.93 16 13 N -0.71 -16.76 5.55 -466.78 -2.59 -19.35 16 14 C 0.15 2.91 6.11 85.64 0.52 3.43 16 15 C -0.14 -1.70 9.24 25.65 0.24 -1.46 16 16 C -0.15 -1.65 9.24 25.65 0.24 -1.41 16 17 C 0.15 1.85 6.11 85.63 0.52 2.38 16 18 N -0.69 -10.12 5.54 -470.28 -2.61 -12.72 16 19 C 0.60 11.29 7.81 86.61 0.68 11.96 16 20 O -0.56 -13.54 16.94 -4.08 -0.07 -13.61 16 21 C -0.06 -1.01 7.46 87.26 0.65 -0.36 16 22 N -0.44 -6.72 10.24 -190.31 -1.95 -8.67 16 23 C 0.01 0.08 11.24 83.95 0.94 1.03 16 24 C -0.25 -1.67 11.09 66.91 0.74 -0.93 16 25 S 0.27 2.90 23.03 -56.49 -1.30 1.60 16 26 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 28 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 29 H 0.42 7.03 8.46 -92.71 -0.78 6.24 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.44 7.79 -2.39 -0.02 1.42 16 32 H 0.14 1.31 7.84 -2.91 -0.02 1.29 16 33 H 0.13 1.34 7.84 -2.91 -0.02 1.32 16 34 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.42 5.35 8.12 -92.71 -0.75 4.60 16 37 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.22 -0.16 8.06 -2.91 -0.02 -0.19 16 Total: -1.00 -82.22 371.77 -1.06 -83.28 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.42 Total: 14.58 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 6.77 Total: 0.58 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -6.86 Total: -96.37 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.12 Total: -39.54 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -5.50 SS G_CDS: -2.46 Total: -7.97 kcal Total: -82.22 -1.06 -83.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704975419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.140 kcal (2) G-P(sol) polarization free energy of solvation -82.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds