Wall clock time and date at job start Sat Apr 11 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99911 * 2 1 4 4 H 1.48498 * 109.46708 * 269.99792 * 3 2 1 5 5 H 1.48500 * 109.46968 * 29.99275 * 3 2 1 6 6 H 1.48495 * 109.47181 * 149.99397 * 3 2 1 7 7 C 1.38792 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00475 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00281 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00254 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47216 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99604 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99995 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99901 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47156 * 179.97438 * 14 13 11 16 16 C 1.30999 * 120.00361 * 127.00646 * 15 14 13 17 17 C 1.50700 * 119.99515 * 7.55828 * 16 15 14 18 18 N 1.46498 * 109.47025 * 127.15820 * 17 16 15 19 19 C 1.34780 * 120.00205 * 179.97438 * 18 17 16 20 20 O 1.21618 * 119.99499 * 0.02562 * 19 18 17 21 21 C 1.47257 * 119.99890 * 179.97438 * 19 18 17 22 22 N 1.30557 * 125.54646 * 359.97438 * 21 19 18 23 23 C 1.30694 * 115.90989 * 180.02562 * 22 21 19 24 24 C 1.34234 * 115.78517 * 0.02562 * 23 22 21 25 25 S 1.71073 * 109.08927 * 359.97438 * 24 23 22 26 26 H 0.96999 * 120.00483 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47154 * 60.00191 * 10 9 7 28 28 H 1.08997 * 109.47555 * 300.00256 * 10 9 7 29 29 H 0.97003 * 119.99617 * 359.97438 * 13 11 10 30 30 H 1.09003 * 109.46935 * 59.99701 * 14 13 11 31 31 H 1.08997 * 109.47129 * 300.00161 * 14 13 11 32 32 H 1.07998 * 119.99961 * 307.00769 * 15 14 13 33 33 H 1.07999 * 120.00307 * 187.56262 * 16 15 14 34 34 H 1.09001 * 109.47545 * 7.16007 * 17 16 15 35 35 H 1.09003 * 109.47256 * 247.15635 * 17 16 15 36 36 H 0.97000 * 120.00046 * 359.97438 * 18 17 16 37 37 H 1.08004 * 122.11409 * 179.97438 * 23 22 21 38 38 H 1.08003 * 125.45963 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1374 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2324 0.0021 12 8 6.3441 -2.2961 0.0025 13 7 6.0459 -4.4946 0.0016 14 6 7.4909 -4.7356 0.0021 15 6 7.7526 -6.2196 0.0020 16 6 8.5392 -6.7460 -0.9036 17 6 9.3157 -5.8538 -1.8375 18 7 10.7343 -6.2167 -1.7927 19 6 11.6251 -5.5488 -2.5523 20 8 11.2512 -4.6445 -3.2746 21 6 13.0512 -5.9132 -2.5068 22 7 13.5694 -6.8603 -1.7727 23 6 14.8619 -7.0225 -1.8789 24 6 15.4867 -6.1926 -2.7291 25 16 14.3349 -5.1416 -3.4329 26 1 -0.4851 0.8400 -0.0004 27 1 3.6441 -3.4313 -0.8894 28 1 3.6434 -3.4317 0.8906 29 1 5.4292 -5.2433 0.0009 30 1 7.9334 -4.2890 0.8926 31 1 7.9342 -4.2880 -0.8873 32 1 7.2917 -6.8493 0.7486 33 1 8.6312 -7.8193 -0.9811 34 1 9.1966 -4.8148 -1.5303 35 1 8.9410 -5.9775 -2.8536 36 1 11.0326 -6.9376 -1.2164 37 1 15.3941 -7.7761 -1.3173 38 1 16.5467 -6.1890 -2.9358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704975420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:40 Heat of formation + Delta-G solvation = 0.227728 kcal Electronic energy + Delta-G solvation = -22484.953767 eV Core-core repulsion = 18774.581931 eV Total energy + Delta-G solvation = -3710.371836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64896 -39.57583 -39.26135 -36.98050 -34.83234 -33.03610 -32.42482 -31.19436 -29.70283 -27.73809 -26.28967 -25.61181 -25.07808 -22.49629 -20.59903 -20.50524 -19.72567 -18.77437 -17.81090 -17.35400 -17.07390 -16.39829 -16.11714 -15.88014 -15.51208 -15.43388 -14.98614 -14.83594 -14.48452 -14.16615 -13.90043 -13.82760 -13.76075 -13.27014 -13.09302 -12.78624 -12.64068 -12.06619 -11.95302 -11.29462 -11.24155 -10.99991 -10.99132 -10.60090 -10.45247 -10.26679 -10.01649 -9.83159 -9.62573 -9.47700 -9.38512 -8.99456 -8.88721 -8.48576 -6.90414 -6.27631 -3.99383 -0.31389 0.57473 1.15033 1.43538 1.81128 2.71857 2.76062 2.85428 2.97185 3.34397 3.39750 3.52491 3.61797 3.72167 4.22741 4.34778 4.46274 4.52439 4.53393 4.75535 4.76570 4.80487 5.11476 5.13600 5.26762 5.33946 5.44325 5.47401 5.61868 5.77488 5.85162 6.02045 6.04149 6.21269 6.50507 6.78006 7.03696 7.59134 7.61992 7.95346 8.42663 8.47984 9.18653 10.81540 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.001634 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.017713 B =17130.369854 C =18026.696695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.518 6.518 13 N -0.733 5.733 14 C 0.133 3.867 15 C -0.140 4.140 16 C -0.163 4.163 17 C 0.133 3.867 18 N -0.699 5.699 19 C 0.597 3.403 20 O -0.521 6.521 21 C -0.023 4.023 22 N -0.426 5.426 23 C 0.028 3.972 24 C -0.281 4.281 25 S 0.261 5.739 26 H 0.271 0.729 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.401 0.599 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.412 0.588 37 H 0.179 0.821 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.149 -20.377 -3.788 36.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.316 3.684 12 O -0.392 6.392 13 N -0.388 5.388 14 C 0.010 3.990 15 C -0.159 4.159 16 C -0.182 4.182 17 C 0.010 3.990 18 N -0.351 5.351 19 C 0.378 3.622 20 O -0.396 6.396 21 C -0.298 4.298 22 N -0.145 5.145 23 C -0.130 4.130 24 C -0.422 4.422 25 S 0.515 5.485 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.235 0.765 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.248 0.752 37 H 0.196 0.804 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 30.637 -17.493 -4.716 35.593 hybrid contribution -0.295 -1.987 0.871 2.189 sum 30.342 -19.480 -3.845 36.261 Atomic orbital electron populations 1.69936 1.05913 1.27761 1.48092 1.24707 0.94445 0.98958 0.93158 0.86737 0.81897 0.83273 0.79970 1.19179 1.19949 1.15915 1.22321 0.88283 0.97543 1.58787 0.89379 1.84813 1.09258 1.00024 1.97426 1.23276 0.93852 1.04427 1.05869 1.20315 0.90656 0.82188 0.75249 1.90712 1.58759 1.42156 1.47582 1.45894 1.06873 1.08156 1.77843 1.20510 0.82422 0.92736 1.03362 1.23032 0.99299 0.96221 0.97333 1.22828 0.99257 0.99975 0.96152 1.20703 0.78554 0.99403 1.00314 1.45645 1.07280 1.37604 1.44617 1.16701 0.82562 0.82218 0.80688 1.90921 1.78936 1.29635 1.40100 1.27672 0.99668 1.00005 1.02438 1.66795 1.12130 1.15776 1.19759 1.21726 0.88632 1.02001 1.00602 1.26996 1.07110 1.03072 1.05041 1.84227 0.95993 1.30499 1.37760 0.91950 0.88414 0.88408 0.76507 0.90533 0.90135 0.85611 0.85709 0.89127 0.89843 0.75218 0.80391 0.79710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.94 27.74 -169.99 -4.72 17.23 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 11 C 0.53 9.35 7.85 -10.98 -0.09 9.27 16 12 O -0.52 -11.26 15.86 5.56 0.09 -11.17 16 13 N -0.73 -8.98 5.55 -61.47 -0.34 -9.32 16 14 C 0.13 1.41 5.76 -5.20 -0.03 1.38 16 15 C -0.14 -0.96 9.63 -36.03 -0.35 -1.31 16 16 C -0.16 -1.01 9.63 -36.03 -0.35 -1.36 16 17 C 0.13 1.10 5.76 -5.19 -0.03 1.07 16 18 N -0.70 -5.78 5.54 -62.62 -0.35 -6.12 16 19 C 0.60 6.30 7.81 -12.59 -0.10 6.20 16 20 O -0.52 -7.18 16.94 5.26 0.09 -7.09 16 21 C -0.02 -0.21 7.46 -14.43 -0.11 -0.32 16 22 N -0.43 -3.40 10.24 -11.51 -0.12 -3.52 16 23 C 0.03 0.16 11.24 -19.45 -0.22 -0.06 16 24 C -0.28 -1.30 11.09 29.32 0.33 -0.98 16 25 S 0.26 1.75 23.03 -107.50 -2.48 -0.73 16 26 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 28 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.40 3.68 8.46 -40.82 -0.35 3.34 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.95 5.30 -51.93 -0.28 0.67 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.09 0.91 5.30 -51.93 -0.28 0.64 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.41 2.66 8.12 -40.82 -0.33 2.33 16 37 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.19 0.30 8.06 -52.48 -0.42 -0.12 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -36.93 364.60 -8.23 -45.17 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.19 Total: 1.84 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.50 Total: -0.31 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.03 Total: -44.83 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.18 Total: -18.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -4.47 Total: -6.34 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.93 -8.23 -45.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704975420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.393 kcal (2) G-P(sol) polarization free energy of solvation -36.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds