Wall clock time and date at job start Sat Apr 11 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99911 * 2 1 4 4 H 1.48498 * 109.46708 * 269.99792 * 3 2 1 5 5 H 1.48500 * 109.46968 * 29.99275 * 3 2 1 6 6 H 1.48495 * 109.47181 * 149.99397 * 3 2 1 7 7 C 1.38792 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00475 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00281 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00254 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47216 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99604 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99995 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99901 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47156 * 179.97438 * 14 13 11 16 16 C 1.30999 * 120.00361 * 127.00646 * 15 14 13 17 17 C 1.50700 * 119.99515 * 7.55828 * 16 15 14 18 18 N 1.46498 * 109.47025 * 127.15820 * 17 16 15 19 19 C 1.34780 * 120.00205 * 179.97438 * 18 17 16 20 20 O 1.21618 * 119.99499 * 0.02562 * 19 18 17 21 21 C 1.47257 * 119.99890 * 179.97438 * 19 18 17 22 22 N 1.30557 * 125.54646 * 359.97438 * 21 19 18 23 23 C 1.30694 * 115.90989 * 180.02562 * 22 21 19 24 24 C 1.34234 * 115.78517 * 0.02562 * 23 22 21 25 25 S 1.71073 * 109.08927 * 359.97438 * 24 23 22 26 26 H 0.96999 * 120.00483 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47154 * 60.00191 * 10 9 7 28 28 H 1.08997 * 109.47555 * 300.00256 * 10 9 7 29 29 H 0.97003 * 119.99617 * 359.97438 * 13 11 10 30 30 H 1.09003 * 109.46935 * 59.99701 * 14 13 11 31 31 H 1.08997 * 109.47129 * 300.00161 * 14 13 11 32 32 H 1.07998 * 119.99961 * 307.00769 * 15 14 13 33 33 H 1.07999 * 120.00307 * 187.56262 * 16 15 14 34 34 H 1.09001 * 109.47545 * 7.16007 * 17 16 15 35 35 H 1.09003 * 109.47256 * 247.15635 * 17 16 15 36 36 H 0.97000 * 120.00046 * 359.97438 * 18 17 16 37 37 H 1.08004 * 122.11409 * 179.97438 * 23 22 21 38 38 H 1.08003 * 125.45963 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1374 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2324 0.0021 12 8 6.3441 -2.2961 0.0025 13 7 6.0459 -4.4946 0.0016 14 6 7.4909 -4.7356 0.0021 15 6 7.7526 -6.2196 0.0020 16 6 8.5392 -6.7460 -0.9036 17 6 9.3157 -5.8538 -1.8375 18 7 10.7343 -6.2167 -1.7927 19 6 11.6251 -5.5488 -2.5523 20 8 11.2512 -4.6445 -3.2746 21 6 13.0512 -5.9132 -2.5068 22 7 13.5694 -6.8603 -1.7727 23 6 14.8619 -7.0225 -1.8789 24 6 15.4867 -6.1926 -2.7291 25 16 14.3349 -5.1416 -3.4329 26 1 -0.4851 0.8400 -0.0004 27 1 3.6441 -3.4313 -0.8894 28 1 3.6434 -3.4317 0.8906 29 1 5.4292 -5.2433 0.0009 30 1 7.9334 -4.2890 0.8926 31 1 7.9342 -4.2880 -0.8873 32 1 7.2917 -6.8493 0.7486 33 1 8.6312 -7.8193 -0.9811 34 1 9.1966 -4.8148 -1.5303 35 1 8.9410 -5.9775 -2.8536 36 1 11.0326 -6.9376 -1.2164 37 1 15.3941 -7.7761 -1.3173 38 1 16.5467 -6.1890 -2.9358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704975420.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:40 Heat of formation + Delta-G solvation = -29.195445 kcal Electronic energy + Delta-G solvation = -22486.229651 eV Core-core repulsion = 18774.581931 eV Total energy + Delta-G solvation = -3711.647721 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29087 -40.69445 -40.10835 -37.81526 -35.82011 -34.67166 -33.97060 -31.77072 -31.04104 -28.46353 -27.86700 -26.98360 -25.86957 -23.09726 -21.88806 -21.19163 -20.42992 -19.87284 -19.21267 -18.09072 -17.94340 -17.68037 -17.13424 -16.86621 -16.82420 -16.59923 -16.11191 -15.86736 -15.54841 -15.13957 -14.94710 -14.85317 -14.73428 -14.40229 -14.33799 -14.11601 -13.55744 -13.34698 -13.20722 -13.01043 -12.64984 -12.50400 -11.98015 -11.85887 -11.77118 -11.17175 -11.13787 -11.01952 -10.76710 -10.54819 -10.52233 -10.38385 -10.01776 -9.82453 -8.99610 -8.51467 -6.22233 -0.85171 0.05735 0.69518 0.79750 1.04095 1.25192 1.31446 1.47644 1.55433 1.58144 2.06644 2.13366 2.24801 2.39578 2.74218 2.86858 3.06333 3.59347 3.86696 3.94065 3.99009 4.08070 4.24143 4.27594 4.37374 4.38834 4.47855 4.62300 4.67932 4.91413 5.05677 5.14781 5.33100 5.46296 5.68438 5.70940 6.11530 6.16716 6.47053 6.47715 6.92020 6.93972 7.19023 8.60800 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.001634 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.017713 B =17130.369854 C =18026.696695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.180 6.180 10 C -0.110 4.110 11 C 0.533 3.467 12 O -0.565 6.565 13 N -0.706 5.706 14 C 0.129 3.871 15 C -0.138 4.138 16 C -0.144 4.144 17 C 0.128 3.872 18 N -0.687 5.687 19 C 0.592 3.408 20 O -0.566 6.566 21 C -0.061 4.061 22 N -0.430 5.430 23 C 0.011 3.989 24 C -0.253 4.253 25 S 0.255 5.745 26 H 0.277 0.723 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.420 0.580 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.422 0.578 37 H 0.208 0.792 38 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.460 -22.641 -3.302 39.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.047 5.953 10 C -0.261 4.261 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.360 5.360 14 C 0.006 3.994 15 C -0.157 4.157 16 C -0.163 4.163 17 C 0.006 3.994 18 N -0.339 5.339 19 C 0.375 3.625 20 O -0.445 6.445 21 C -0.333 4.333 22 N -0.149 5.149 23 C -0.146 4.146 24 C -0.394 4.394 25 S 0.509 5.491 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.257 0.743 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.260 0.740 37 H 0.224 0.776 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 32.929 -19.850 -4.200 38.678 hybrid contribution -0.856 -1.479 0.692 1.844 sum 32.074 -21.329 -3.508 38.677 Atomic orbital electron populations 1.70009 1.07233 1.28997 1.49153 1.25534 0.95255 1.02161 0.92904 0.85888 0.80686 0.79753 0.80176 1.18808 1.18247 1.16180 1.22461 0.90168 0.96748 1.58231 0.91794 1.84772 1.06540 1.06439 1.97598 1.23267 0.95666 0.99478 1.07678 1.20024 0.89504 0.83374 0.75280 1.90701 1.59410 1.43969 1.50305 1.45646 1.08264 1.06827 1.75246 1.20606 0.80716 0.95659 1.02379 1.22948 1.00388 0.93770 0.98563 1.22920 0.97870 1.00949 0.94515 1.20689 0.79036 0.99016 1.00698 1.45585 1.07047 1.37291 1.44009 1.17013 0.83608 0.81679 0.80179 1.90882 1.79887 1.31628 1.42089 1.27378 0.99291 1.01893 1.04756 1.66783 1.13425 1.15292 1.19371 1.22230 0.87998 1.03004 1.01324 1.27428 1.08198 1.00858 1.02918 1.84275 0.96205 1.30987 1.37668 0.91370 0.86702 0.86477 0.74269 0.91447 0.91552 0.82754 0.82600 0.91269 0.90432 0.74040 0.77556 0.76260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.02 13.97 21.65 0.30 -55.71 16 2 C 0.05 2.78 5.50 84.86 0.47 3.24 16 3 Si 0.91 45.57 27.74 68.60 1.90 47.48 16 4 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.24 -11.90 6.74 99.48 0.67 -11.23 16 7 C -0.53 -30.96 10.04 67.95 0.68 -30.28 16 8 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 9 S -0.18 -9.21 18.55 -56.49 -1.05 -10.26 16 10 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 11 C 0.53 18.37 7.85 87.66 0.69 19.05 16 12 O -0.57 -24.78 15.86 -3.02 -0.05 -24.82 16 13 N -0.71 -16.03 5.55 -466.79 -2.59 -18.62 16 14 C 0.13 2.60 5.76 85.63 0.49 3.10 16 15 C -0.14 -1.51 9.63 25.65 0.25 -1.27 16 16 C -0.14 -1.41 9.63 25.65 0.25 -1.16 16 17 C 0.13 2.10 5.76 85.63 0.49 2.59 16 18 N -0.69 -11.23 5.54 -470.27 -2.61 -13.84 16 19 C 0.59 12.97 7.81 86.61 0.68 13.65 16 20 O -0.57 -16.63 16.94 -4.09 -0.07 -16.70 16 21 C -0.06 -1.08 7.46 87.26 0.65 -0.43 16 22 N -0.43 -6.32 10.24 -190.31 -1.95 -8.27 16 23 C 0.01 0.10 11.24 83.95 0.94 1.04 16 24 C -0.25 -1.67 11.09 66.91 0.74 -0.92 16 25 S 0.26 3.26 23.03 -56.49 -1.30 1.96 16 26 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.12 3.95 8.14 -2.40 -0.02 3.93 16 29 H 0.42 6.46 8.46 -92.71 -0.78 5.67 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.58 5.30 -2.39 -0.01 1.57 16 32 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.07 1.46 5.30 -2.39 -0.01 1.45 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.42 5.00 8.12 -92.71 -0.75 4.25 16 37 H 0.21 0.52 8.06 -2.91 -0.02 0.50 16 38 H 0.22 -0.20 8.06 -2.91 -0.02 -0.22 16 Total: -1.00 -83.24 364.60 -1.08 -84.33 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -0.44 Total: 9.53 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 6.77 Total: 4.93 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -6.84 Total: -96.44 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -0.12 Total: -41.52 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.48 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -2.35 Total: -8.30 kcal Total: -83.24 -1.08 -84.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704975420.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.131 kcal (2) G-P(sol) polarization free energy of solvation -83.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds