Wall clock time and date at job start Sat Apr 11 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99736 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99896 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99696 * 3 2 1 7 7 C 1.38798 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 359.72198 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00309 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47359 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.97039 * 53.32317 * 15 14 13 17 17 C 1.53948 * 113.76960 * 185.00254 * 15 14 13 18 18 C 1.53948 * 86.29233 * 137.90887 * 17 15 14 19 19 N 1.47582 * 86.11463 * 336.38861 * 18 17 15 20 20 C 1.34775 * 134.49667 * 204.63213 * 19 18 17 21 21 O 1.21631 * 120.00340 * 180.02562 * 20 19 18 22 22 C 1.47268 * 119.99665 * 0.02562 * 20 19 18 23 23 C 1.35207 * 123.13807 * 179.72676 * 22 20 19 24 24 S 1.70947 * 108.82466 * 179.89668 * 23 22 20 25 25 C 1.70772 * 91.12921 * 0.30567 * 24 23 22 26 26 N 1.28652 * 110.56066 * 359.81691 * 25 24 23 27 27 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 29 29 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 30 30 H 0.97005 * 120.00069 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47102 * 300.00443 * 14 13 11 32 32 H 1.09006 * 109.46942 * 60.00242 * 14 13 11 33 33 H 1.08999 * 113.74082 * 252.24997 * 17 15 14 34 34 H 1.08996 * 113.74180 * 23.45150 * 17 15 14 35 35 H 1.08996 * 113.77292 * 90.68941 * 18 17 15 36 36 H 1.09000 * 113.76678 * 221.98665 * 18 17 15 37 37 H 1.08003 * 125.59037 * 0.02562 * 23 22 20 38 38 H 1.07997 * 124.71995 * 179.82136 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0086 10 6 2.5161 -3.8913 0.0147 11 6 1.9876 -5.3026 0.0216 12 8 0.7914 -5.5023 0.0218 13 7 2.8444 -6.3430 0.0264 14 6 2.3307 -7.7150 0.0325 15 6 3.5028 -8.6983 0.0378 16 1 4.2135 -8.5088 0.8422 17 6 3.0761 -10.1729 -0.0785 18 6 4.2554 -10.3333 -1.0548 19 7 4.1322 -8.8807 -1.2846 20 6 4.4622 -8.0530 -2.2958 21 8 4.2348 -6.8615 -2.2053 22 6 5.0980 -8.5911 -3.5102 23 6 5.4502 -7.8203 -4.5637 24 16 6.1557 -8.8138 -5.7627 25 6 5.9318 -10.2013 -4.7927 26 7 5.3757 -9.8870 -3.6760 27 1 -0.4850 0.8400 -0.0004 28 1 3.1247 -3.7359 -0.8761 29 1 3.1246 -3.7266 0.9039 30 1 3.8012 -6.1834 0.0259 31 1 1.7219 -7.8710 0.9230 32 1 1.7223 -7.8791 -0.8570 33 1 3.1923 -10.7376 0.8466 34 1 2.0990 -10.3119 -0.5412 35 1 5.1886 -10.6242 -0.5726 36 1 4.0219 -10.9396 -1.9301 37 1 5.3107 -6.7517 -4.6351 38 1 6.2173 -11.2033 -5.0772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705186790.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:41 Heat of formation + Delta-G solvation = -12.449494 kcal Electronic energy + Delta-G solvation = -24084.076350 eV Core-core repulsion = 20373.154788 eV Total energy + Delta-G solvation = -3710.921562 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84478 -40.70023 -40.06422 -38.62250 -35.61986 -34.61467 -32.01422 -31.54045 -30.80861 -28.78287 -27.66365 -26.79789 -24.27301 -24.01051 -21.89061 -21.62664 -20.26513 -19.94061 -19.20832 -17.89034 -17.65961 -17.54916 -17.19913 -16.91095 -16.64231 -16.44038 -16.00523 -15.87951 -15.43789 -14.86276 -14.71853 -14.57160 -14.48277 -14.33996 -13.92953 -13.43979 -13.29887 -13.20026 -13.05236 -12.93624 -12.90466 -12.65721 -12.40786 -12.05887 -11.73756 -11.17036 -11.14298 -10.91304 -10.78826 -10.74147 -10.33380 -10.10580 -10.07571 -9.70095 -8.70505 -8.37189 -6.16135 -0.48724 0.29753 0.64047 0.94776 1.23392 1.40386 1.43080 1.54716 1.60469 1.75716 2.24269 2.26639 2.35404 2.96193 3.03590 3.28197 3.43692 3.70941 3.80751 3.95935 4.00208 4.10038 4.17629 4.22572 4.28150 4.38867 4.44910 4.48962 4.70367 4.75462 4.79832 4.99542 5.12712 5.30756 5.38190 5.42964 6.17123 6.36449 6.46076 6.58415 7.03098 7.03805 7.22271 8.72485 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.002548 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.313339 B =10984.851526 C =12651.879764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.002 2.998 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.079 0.921 9 S -0.146 6.146 10 C -0.126 4.126 11 C 0.535 3.465 12 O -0.570 6.570 13 N -0.700 5.700 14 C 0.120 3.880 15 C 0.122 3.878 16 H 0.126 0.874 17 C -0.128 4.128 18 C 0.120 3.880 19 N -0.633 5.633 20 C 0.595 3.405 21 O -0.566 6.566 22 C -0.013 4.013 23 C -0.251 4.251 24 S 0.283 5.717 25 C -0.002 4.002 26 N -0.456 5.456 27 H 0.272 0.728 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.409 0.591 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.177 0.823 38 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.831 -29.833 -8.192 36.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.697 4.697 8 H 0.097 0.903 9 S 0.082 5.918 10 C -0.277 4.277 11 C 0.321 3.679 12 O -0.449 6.449 13 N -0.352 5.352 14 C -0.004 4.004 15 C 0.019 3.981 16 H 0.143 0.857 17 C -0.166 4.166 18 C -0.001 4.001 19 N -0.368 5.368 20 C 0.383 3.617 21 O -0.445 6.445 22 C -0.148 4.148 23 C -0.394 4.394 24 S 0.539 5.461 25 C -0.301 4.301 26 N -0.171 5.171 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.245 0.755 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.194 0.806 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 16.949 -29.646 -8.873 35.283 hybrid contribution 1.379 2.053 0.601 2.545 sum 18.328 -27.592 -8.272 34.142 Atomic orbital electron populations 1.70186 1.07962 1.28712 1.47860 1.26174 0.96055 1.03364 0.93587 0.84910 0.78151 0.75763 0.78852 1.19271 1.19797 1.18291 1.23190 0.95235 0.92062 1.59171 0.90312 1.85452 1.10322 0.99060 1.97011 1.23313 1.03518 0.94922 1.05933 1.19956 0.86165 0.86679 0.75121 1.90651 1.17130 1.86156 1.51010 1.45643 1.09963 1.05097 1.74505 1.21600 0.96596 0.80183 1.01994 1.23443 0.93101 0.96526 0.85029 0.85674 1.23584 0.99308 0.91674 1.02022 1.23331 0.99047 0.78854 0.98835 1.50205 1.59604 1.11289 1.15688 1.17231 0.77464 0.84692 0.82362 1.90854 1.56021 1.16221 1.81396 1.20334 1.07693 0.89581 0.97220 1.26867 1.05629 1.07698 0.99184 1.82756 1.50113 0.96454 1.16775 1.29215 1.01380 1.06752 0.92715 1.67030 1.13953 1.14510 1.21648 0.91858 0.88768 0.87478 0.75493 0.89284 0.93877 0.85483 0.88907 0.87652 0.88904 0.80571 0.73878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.22 13.22 21.65 0.29 -57.93 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 45.73 29.55 68.60 2.03 47.76 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.55 -33.56 9.50 67.95 0.65 -32.92 16 8 H 0.08 4.54 7.80 -2.91 -0.02 4.51 16 9 S -0.15 -8.80 20.57 -56.49 -1.16 -9.96 16 10 C -0.13 -5.89 6.16 71.24 0.44 -5.45 16 11 C 0.54 23.59 7.85 87.66 0.69 24.27 16 12 O -0.57 -29.68 15.86 -3.02 -0.05 -29.73 16 13 N -0.70 -23.20 4.27 -463.07 -1.98 -25.18 16 14 C 0.12 3.19 5.32 86.38 0.46 3.65 16 15 C 0.12 2.04 4.28 45.09 0.19 2.24 16 16 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 17 C -0.13 -1.19 7.86 31.26 0.25 -0.95 16 18 C 0.12 1.36 7.74 86.48 0.67 2.03 16 19 N -0.63 -12.85 3.49 -817.98 -2.85 -15.71 16 20 C 0.59 16.27 7.93 86.62 0.69 16.96 16 21 O -0.57 -19.90 14.82 -4.13 -0.06 -19.96 16 22 C -0.01 -0.29 6.69 40.56 0.27 -0.02 16 23 C -0.25 -4.86 10.62 67.12 0.71 -4.15 16 24 S 0.28 2.61 22.97 -56.49 -1.30 1.31 16 25 C 0.00 -0.01 12.17 130.71 1.59 1.58 16 26 N -0.46 -7.42 8.63 -193.02 -1.67 -9.09 16 27 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 28 H 0.09 4.32 8.14 -2.40 -0.02 4.30 16 29 H 0.11 4.52 8.14 -2.39 -0.02 4.50 16 30 H 0.41 12.31 7.53 -92.70 -0.70 11.61 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.09 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 1.09 7.32 -2.39 -0.02 1.08 16 37 H 0.18 3.78 8.03 -2.91 -0.02 3.76 16 38 H 0.25 -0.12 8.06 -2.91 -0.02 -0.15 16 Total: -1.00 -91.31 358.46 0.73 -90.58 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.41 Total: 19.43 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 7.07 Total: 8.47 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -6.21 Total: -107.91 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.11 Total: -49.69 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: -6.18 SS G_CDS: -2.46 Total: -8.64 kcal Total: -91.31 0.73 -90.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705186790.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.131 kcal (2) G-P(sol) polarization free energy of solvation -91.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds