Wall clock time and date at job start Sat Apr 11 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 119.99922 * 2 1 4 4 H 1.48505 * 109.46671 * 269.99380 * 3 2 1 5 5 H 1.48498 * 109.47349 * 29.99321 * 3 2 1 6 6 H 1.48503 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38792 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00162 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00286 * 179.97438 * 7 2 1 10 10 C 1.80996 * 100.00492 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47163 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00093 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99700 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99696 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46829 * 174.88082 * 14 13 11 16 16 N 1.46496 * 115.56299 * 324.99453 * 15 14 13 17 17 C 1.34781 * 119.99734 * 270.31217 * 16 15 14 18 18 O 1.21677 * 119.99808 * 4.76458 * 17 16 15 19 19 C 1.46678 * 119.99391 * 184.76927 * 17 16 15 20 20 C 1.35668 * 126.12392 * 179.71985 * 19 17 16 21 21 N 1.30940 * 114.18589 * 179.78487 * 20 19 17 22 22 C 1.29428 * 117.36700 * 0.52049 * 21 20 19 23 23 S 1.70947 * 110.39201 * 359.70772 * 22 21 20 24 24 C 1.53001 * 117.49659 * 179.30311 * 15 14 13 25 25 C 1.52999 * 60.03459 * 252.50182 * 24 15 14 26 26 H 0.97006 * 120.00156 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47034 * 60.00033 * 10 9 7 28 28 H 1.09002 * 109.46904 * 300.00401 * 10 9 7 29 29 H 0.97001 * 120.00139 * 359.97438 * 13 11 10 30 30 H 1.08997 * 109.47611 * 54.87963 * 14 13 11 31 31 H 1.08997 * 109.46964 * 294.87858 * 14 13 11 32 32 H 0.97001 * 119.99732 * 90.31355 * 16 15 14 33 33 H 1.07997 * 122.90917 * 359.95488 * 20 19 17 34 34 H 1.08001 * 124.80378 * 179.72973 * 22 21 20 35 35 H 1.09005 * 117.49853 * 0.02562 * 24 15 14 36 36 H 1.08997 * 117.50354 * 144.99872 * 24 15 14 37 37 H 1.09004 * 117.49953 * 107.50177 * 25 24 15 38 38 H 1.08993 * 117.50207 * 252.52675 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2325 0.0002 12 8 6.3439 -2.2964 0.0006 13 7 6.0456 -4.4948 -0.0001 14 6 7.4906 -4.7358 0.0006 15 6 7.7571 -6.2370 0.1288 16 7 6.8121 -6.9774 0.9684 17 6 7.0471 -7.1134 2.2886 18 8 7.9968 -6.5493 2.7988 19 6 6.1579 -7.9417 3.1101 20 6 6.2801 -8.1681 4.4421 21 7 5.3509 -8.9436 4.9419 22 6 4.4548 -9.3996 4.1270 23 16 4.7438 -8.8268 2.5425 24 6 9.2161 -6.6977 0.1320 25 6 8.3349 -6.9593 -1.0910 26 1 -0.4851 0.8401 -0.0004 27 1 3.6433 -3.4318 -0.8896 28 1 3.6439 -3.4314 0.8904 29 1 5.4290 -5.2436 0.0000 30 1 7.9459 -4.2129 0.8416 31 1 7.9206 -4.3688 -0.9313 32 1 6.0174 -7.3696 0.5742 33 1 7.0735 -7.7433 5.0392 34 1 3.6395 -10.0498 4.4083 35 1 9.9861 -5.9313 0.0432 36 1 9.4731 -7.5514 0.7591 37 1 8.5250 -6.3650 -1.9848 38 1 8.0115 -7.9849 -1.2682 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738730405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:12 Heat of formation + Delta-G solvation = 8.762862 kcal Electronic energy + Delta-G solvation = -23870.780630 eV Core-core repulsion = 20160.778905 eV Total energy + Delta-G solvation = -3710.001725 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.81172 -39.95021 -39.06546 -37.60857 -34.09791 -33.55050 -32.45099 -30.93234 -29.93296 -26.79729 -26.35476 -25.57700 -23.43047 -22.85530 -20.60221 -20.38481 -20.32178 -19.30812 -18.07307 -17.37724 -16.78614 -16.49291 -16.02709 -15.69703 -15.41298 -15.14569 -14.97005 -14.77377 -14.47377 -14.29436 -14.17507 -13.83087 -13.48296 -13.31347 -12.86240 -12.76424 -12.10358 -12.05215 -11.90022 -11.39089 -11.27040 -11.01609 -10.75859 -10.63073 -10.48357 -10.19672 -10.06603 -9.87158 -9.69939 -9.57182 -9.52922 -9.03533 -8.97933 -8.51363 -6.93035 -6.30236 -4.01990 -0.24753 0.67433 1.05148 2.01085 2.38040 2.74295 2.75206 2.94747 3.15057 3.31785 3.35509 3.50517 3.63781 3.77832 4.14575 4.29383 4.32419 4.41389 4.54431 4.65589 4.73762 4.83397 5.07518 5.09007 5.19265 5.24700 5.44075 5.50341 5.57615 5.64687 5.69698 5.74593 5.96688 5.99622 6.46310 6.84661 7.09633 7.54377 7.66149 7.92776 8.39683 8.45265 9.16093 10.78969 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.002838 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.131883 B = 9865.421279 C =11483.300854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.732 5.732 14 C 0.154 3.846 15 C 0.081 3.919 16 N -0.696 5.696 17 C 0.603 3.397 18 O -0.507 6.507 19 C -0.293 4.293 20 C 0.121 3.879 21 N -0.475 5.475 22 C 0.039 3.961 23 S 0.168 5.832 24 C -0.145 4.145 25 C -0.168 4.168 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.395 0.605 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.401 0.599 33 H 0.190 0.810 34 H 0.208 0.792 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.224 -24.575 1.277 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.391 6.391 13 N -0.386 5.386 14 C 0.029 3.971 15 C -0.007 4.007 16 N -0.349 5.349 17 C 0.388 3.612 18 O -0.382 6.382 19 C -0.417 4.417 20 C -0.037 4.037 21 N -0.188 5.188 22 C -0.256 4.256 23 S 0.422 5.578 24 C -0.183 4.183 25 C -0.205 4.205 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.228 0.772 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.236 0.764 33 H 0.207 0.793 34 H 0.224 0.776 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.451 -22.829 1.258 27.047 hybrid contribution -1.091 -0.668 0.412 1.344 sum 13.360 -23.497 1.670 27.081 Atomic orbital electron populations 1.69938 1.05916 1.27784 1.48070 1.24704 0.94450 0.98968 0.93145 0.86739 0.81937 0.83270 0.79950 1.19183 1.19913 1.15896 1.22312 0.88278 0.97523 1.58819 0.89416 1.84815 1.09251 0.99879 1.97413 1.23268 0.93912 1.04549 1.05697 1.20278 0.90640 0.82149 0.75282 1.90707 1.58740 1.42087 1.47559 1.45789 1.07049 1.07974 1.77827 1.21033 0.82242 0.90843 1.03009 1.20861 0.91897 0.91048 0.96870 1.45114 1.26211 1.56366 1.07169 1.16688 0.83715 0.79651 0.81165 1.90880 1.29531 1.46009 1.71815 1.25783 1.04478 1.11959 0.99521 1.22310 0.96934 0.93556 0.90873 1.66281 1.03717 1.12084 1.36743 1.28897 1.01921 1.02644 0.92142 1.83978 1.20475 1.39977 1.13381 1.23207 0.91777 1.03624 0.99690 1.23559 1.02448 1.01857 0.92665 0.91930 0.88488 0.88613 0.77153 0.90210 0.90317 0.76372 0.79341 0.77570 0.87248 0.88004 0.87071 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.83 27.74 -169.99 -4.71 17.11 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 8 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 11 C 0.53 9.45 7.85 -10.98 -0.09 9.37 16 12 O -0.52 -11.25 15.86 5.56 0.09 -11.16 16 13 N -0.73 -9.30 5.40 -60.29 -0.33 -9.63 16 14 C 0.15 1.76 5.90 -4.04 -0.02 1.74 16 15 C 0.08 0.68 2.16 -131.78 -0.28 0.40 16 16 N -0.70 -5.60 4.48 -48.86 -0.22 -5.82 16 17 C 0.60 6.32 7.63 -12.85 -0.10 6.22 16 18 O -0.51 -7.05 16.25 5.21 0.08 -6.96 16 19 C -0.29 -2.63 6.48 -37.10 -0.24 -2.87 16 20 C 0.12 1.15 11.09 -18.85 -0.21 0.95 16 21 N -0.48 -4.39 10.51 -15.38 -0.16 -4.55 16 22 C 0.04 0.24 12.22 51.75 0.63 0.87 16 23 S 0.17 0.96 22.36 -107.50 -2.40 -1.45 16 24 C -0.14 -1.10 9.22 -26.73 -0.25 -1.35 16 25 C -0.17 -0.99 10.11 -26.69 -0.27 -1.26 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 28 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 29 H 0.39 3.91 7.64 -40.82 -0.31 3.59 16 30 H 0.08 1.12 8.13 -51.93 -0.42 0.70 16 31 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 32 H 0.40 2.28 7.86 -40.82 -0.32 1.96 16 33 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.11 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -37.25 363.18 -8.21 -45.46 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.42 Total: 2.85 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.39 Total: -0.05 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.07 Total: -45.73 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.12 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -4.40 Total: -6.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.25 -8.21 -45.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738730405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.225 kcal (2) G-P(sol) polarization free energy of solvation -37.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds