Wall clock time and date at job start Sat Apr 11 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 119.99922 * 2 1 4 4 H 1.48505 * 109.46671 * 269.99380 * 3 2 1 5 5 H 1.48498 * 109.47349 * 29.99321 * 3 2 1 6 6 H 1.48503 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38792 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00162 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00286 * 179.97438 * 7 2 1 10 10 C 1.80996 * 100.00492 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47163 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00093 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99700 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99696 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46829 * 174.88082 * 14 13 11 16 16 N 1.46496 * 115.56299 * 324.99453 * 15 14 13 17 17 C 1.34781 * 119.99734 * 270.31217 * 16 15 14 18 18 O 1.21677 * 119.99808 * 4.76458 * 17 16 15 19 19 C 1.46678 * 119.99391 * 184.76927 * 17 16 15 20 20 C 1.35668 * 126.12392 * 179.71985 * 19 17 16 21 21 N 1.30940 * 114.18589 * 179.78487 * 20 19 17 22 22 C 1.29428 * 117.36700 * 0.52049 * 21 20 19 23 23 S 1.70947 * 110.39201 * 359.70772 * 22 21 20 24 24 C 1.53001 * 117.49659 * 179.30311 * 15 14 13 25 25 C 1.52999 * 60.03459 * 252.50182 * 24 15 14 26 26 H 0.97006 * 120.00156 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47034 * 60.00033 * 10 9 7 28 28 H 1.09002 * 109.46904 * 300.00401 * 10 9 7 29 29 H 0.97001 * 120.00139 * 359.97438 * 13 11 10 30 30 H 1.08997 * 109.47611 * 54.87963 * 14 13 11 31 31 H 1.08997 * 109.46964 * 294.87858 * 14 13 11 32 32 H 0.97001 * 119.99732 * 90.31355 * 16 15 14 33 33 H 1.07997 * 122.90917 * 359.95488 * 20 19 17 34 34 H 1.08001 * 124.80378 * 179.72973 * 22 21 20 35 35 H 1.09005 * 117.49853 * 0.02562 * 24 15 14 36 36 H 1.08997 * 117.50354 * 144.99872 * 24 15 14 37 37 H 1.09004 * 117.49953 * 107.50177 * 25 24 15 38 38 H 1.08993 * 117.50207 * 252.52675 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2325 0.0002 12 8 6.3439 -2.2964 0.0006 13 7 6.0456 -4.4948 -0.0001 14 6 7.4906 -4.7358 0.0006 15 6 7.7571 -6.2370 0.1288 16 7 6.8121 -6.9774 0.9684 17 6 7.0471 -7.1134 2.2886 18 8 7.9968 -6.5493 2.7988 19 6 6.1579 -7.9417 3.1101 20 6 6.2801 -8.1681 4.4421 21 7 5.3509 -8.9436 4.9419 22 6 4.4548 -9.3996 4.1270 23 16 4.7438 -8.8268 2.5425 24 6 9.2161 -6.6977 0.1320 25 6 8.3349 -6.9593 -1.0910 26 1 -0.4851 0.8401 -0.0004 27 1 3.6433 -3.4318 -0.8896 28 1 3.6439 -3.4314 0.8904 29 1 5.4290 -5.2436 0.0000 30 1 7.9459 -4.2129 0.8416 31 1 7.9206 -4.3688 -0.9313 32 1 6.0174 -7.3696 0.5742 33 1 7.0735 -7.7433 5.0392 34 1 3.6395 -10.0498 4.4083 35 1 9.9861 -5.9313 0.0432 36 1 9.4731 -7.5514 0.7591 37 1 8.5250 -6.3650 -1.9848 38 1 8.0115 -7.9849 -1.2682 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738730405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:11 Heat of formation + Delta-G solvation = -20.127716 kcal Electronic energy + Delta-G solvation = -23872.033420 eV Core-core repulsion = 20160.778905 eV Total energy + Delta-G solvation = -3711.254514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57626 -40.78569 -40.20870 -38.42431 -35.32329 -34.67440 -34.29703 -31.56758 -31.37022 -27.99146 -27.55205 -27.09009 -24.11506 -23.41710 -21.88335 -21.10973 -21.08818 -19.97488 -19.88352 -18.37133 -17.85864 -17.57578 -17.11750 -16.85414 -16.75974 -16.36935 -16.17818 -15.61000 -15.52593 -15.06797 -14.96270 -14.92857 -14.87503 -14.68903 -14.51678 -13.64803 -13.50318 -13.35070 -13.01851 -12.68913 -12.67117 -12.44083 -12.03611 -11.87688 -11.53806 -11.23697 -11.17543 -11.01079 -10.81140 -10.70874 -10.54372 -10.37347 -10.17800 -10.10437 -9.00716 -8.52190 -6.22933 -0.83945 0.13873 0.50189 0.96780 1.30554 1.34803 1.45403 1.51365 1.53320 1.71782 2.02631 2.17300 2.24933 2.62767 2.72058 2.86303 3.26148 3.44470 3.66176 3.76230 3.82880 3.94858 4.10804 4.19629 4.30116 4.41269 4.43008 4.57130 4.66561 4.74266 4.94593 4.97552 5.17275 5.19270 5.39532 5.70332 6.10869 6.19371 6.37133 6.52340 6.93365 6.94169 7.12274 8.60072 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.002838 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.131883 B = 9865.421279 C =11483.300854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.239 1.239 7 C -0.527 4.527 8 H 0.065 0.935 9 S -0.177 6.177 10 C -0.110 4.110 11 C 0.534 3.466 12 O -0.561 6.561 13 N -0.706 5.706 14 C 0.156 3.844 15 C 0.063 3.937 16 N -0.683 5.683 17 C 0.601 3.399 18 O -0.552 6.552 19 C -0.321 4.321 20 C 0.109 3.891 21 N -0.508 5.508 22 C 0.039 3.961 23 S 0.237 5.763 24 C -0.153 4.153 25 C -0.133 4.133 26 H 0.277 0.723 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.412 0.588 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.414 0.586 33 H 0.179 0.821 34 H 0.242 0.758 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 -26.509 -0.058 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.163 1.163 7 C -0.675 4.675 8 H 0.083 0.917 9 S 0.049 5.951 10 C -0.261 4.261 11 C 0.319 3.681 12 O -0.439 6.439 13 N -0.360 5.360 14 C 0.031 3.969 15 C -0.025 4.025 16 N -0.336 5.336 17 C 0.387 3.613 18 O -0.430 6.430 19 C -0.445 4.445 20 C -0.049 4.049 21 N -0.222 5.222 22 C -0.254 4.254 23 S 0.492 5.508 24 C -0.191 4.191 25 C -0.170 4.170 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.248 0.752 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.252 0.748 33 H 0.196 0.804 34 H 0.258 0.742 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.325 -24.838 -0.112 28.673 hybrid contribution -1.084 -0.277 0.815 1.384 sum 13.241 -25.115 0.703 28.400 Atomic orbital electron populations 1.70009 1.07219 1.29005 1.49150 1.25519 0.95245 1.02130 0.92921 0.85902 0.80638 0.79800 0.80268 1.18536 1.18390 1.16322 1.22447 0.90098 0.96749 1.58215 0.91719 1.84783 1.06615 1.06086 1.97586 1.23250 0.95518 0.99765 1.07533 1.20008 0.89599 0.83186 0.75260 1.90699 1.59364 1.43765 1.50103 1.45524 1.08240 1.06758 1.75465 1.21079 0.80669 0.92919 1.02275 1.20768 0.92780 0.89621 0.99293 1.45001 1.26554 1.55616 1.06411 1.16953 0.83306 0.79253 0.81796 1.90852 1.31492 1.47939 1.72749 1.25737 1.06277 1.13053 0.99478 1.22303 0.97239 0.94030 0.91368 1.66311 1.04658 1.13215 1.37973 1.29562 1.01626 1.01792 0.92447 1.83660 1.17468 1.37837 1.11862 1.23235 0.91303 1.03452 1.01084 1.23674 0.99060 1.02588 0.91685 0.91357 0.86222 0.87159 0.75160 0.93269 0.89260 0.74809 0.80387 0.74161 0.87236 0.88653 0.85693 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.36 13.97 21.65 0.30 -55.05 16 2 C 0.05 2.77 5.50 84.86 0.47 3.23 16 3 Si 0.91 44.99 27.74 68.60 1.90 46.90 16 4 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 7 C -0.53 -30.42 10.04 67.95 0.68 -29.74 16 8 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 9 S -0.18 -8.94 18.55 -56.49 -1.05 -9.99 16 10 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 11 C 0.53 18.36 7.85 87.66 0.69 19.04 16 12 O -0.56 -24.30 15.86 -3.01 -0.05 -24.35 16 13 N -0.71 -16.61 5.40 -463.06 -2.50 -19.11 16 14 C 0.16 3.38 5.90 86.38 0.51 3.89 16 15 C 0.06 0.95 2.16 3.63 0.01 0.96 16 16 N -0.68 -9.74 4.48 -426.73 -1.91 -11.65 16 17 C 0.60 12.36 7.63 86.45 0.66 13.02 16 18 O -0.55 -15.88 16.25 -4.28 -0.07 -15.95 16 19 C -0.32 -5.52 6.48 23.88 0.15 -5.37 16 20 C 0.11 2.13 11.09 84.23 0.93 3.06 16 21 N -0.51 -9.02 10.51 -202.57 -2.13 -11.15 16 22 C 0.04 0.40 12.22 130.60 1.60 1.99 16 23 S 0.24 2.06 22.36 -56.49 -1.26 0.80 16 24 C -0.15 -2.11 9.22 30.59 0.28 -1.83 16 25 C -0.13 -1.12 10.11 30.62 0.31 -0.81 16 26 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 27 H 0.12 3.91 8.14 -2.40 -0.02 3.89 16 28 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 29 H 0.41 6.93 7.64 -92.71 -0.71 6.22 16 30 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 31 H 0.09 1.79 7.91 -2.39 -0.02 1.77 16 32 H 0.41 3.45 7.86 -92.71 -0.73 2.72 16 33 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 34 H 0.24 0.46 8.06 -2.91 -0.02 0.43 16 35 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.12 0.80 8.06 -2.38 -0.02 0.78 16 38 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -83.09 363.18 -0.39 -83.47 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -0.35 Total: 12.25 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.73 Total: 3.83 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -6.24 Total: -96.97 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.12 Total: -40.30 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.90 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -2.31 Total: -9.19 kcal Total: -83.09 -0.39 -83.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738730405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.346 kcal (2) G-P(sol) polarization free energy of solvation -83.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds